MD12G1111800.v1.1

SNAP receptor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0003230
Physical Location & Seq
Forward (+)
17741668 .. 17745239
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1111800.v1.1.491

Sequence Viewer

Length: 651 bp
ATGCGAGAATTCAATGATGCTTCAAAGCTTGCTGATGAAATCAATGGCATGATTTCCGGAAGGAGTTCGTTGCCAGTGTCACCCTCTGGACCAGAAACACAACGTCATATGTCCGCAACTCGAAGAAAGGTTACGATACTAAGGACAAAGCTTGAGACTTTGCACTCACTCCTGTCTAAGCTTCCCACCAAGCAGAAGCAGTCAATAACAGGAAAAGAAATGAATCGTCGCAAAGAAATGCTCGCAAGTTTGAGTTCTAAAGCTGATCAAATGGCTACTACTCTCAATATGTCTAGCCTTGCTAACAGAAATAACTTGCTTGGCCCTGATAAGAAGACGGATGACATAATGAGCAGAACAACTGGTTTAAACAACCATGAACAAGATGAAGGCCTTGACAAATTGGAGGAGACGGTTATTAGTACCAAACACATTGCGTTGGCAGTCAATGAGGAACTTGATCTGCACACGAGGCTTCTGGATAATCTGGACCAGCAGGTGGACTCAACAAATTCAAACCTACAGCGGGTGCAAAAGAAATTGGCAGTACTGAACAAACGCAACAAAGGCGGTTGTTCTTGCTTGATCCTACTGGTCATTGGAGTTGTGATTTTGATAATTGTCACCTGGGCATTGATTAAGTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000138 GO:0000149 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0000407 GO:0001505 GO:0002376 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005769 GO:0005770 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0006836 GO:0006886 GO:0006887 GO:0006892 GO:0006896 GO:0006904 GO:0006906 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008152 GO:0008200 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010033 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016079 GO:0016081 GO:0016192 GO:0016236 GO:0016237 GO:0016247 GO:0016248 GO:0016482 GO:0017081 GO:0017156 GO:0019869 GO:0019899 GO:0019905 GO:0022406 GO:0023052 GO:0023061 GO:0030139 GO:0031090 GO:0031201 GO:0031224 GO:0031226 GO:0031410 GO:0031625 GO:0031902 GO:0031982 GO:0031984 GO:0031985 GO:0032258 GO:0032266 GO:0032879 GO:0032880 GO:0032940 GO:0032991 GO:0033036 GO:0033365 GO:0034097 GO:0034341 GO:0034613 GO:0034727 GO:0035091 GO:0042144 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044804 GO:0045022 GO:0045055 GO:0045087 GO:0045184 GO:0045335 GO:0046903 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0048471 GO:0048489 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0055037 GO:0060341 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065008 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072665 GO:0090174 GO:0097479 GO:0097480 GO:0097576 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098796 GO:0098805 GO:0098852 GO:0098916 GO:0098927 GO:0099003 GO:0099106 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0140029 GO:0140056 GO:1901981 GO:1903076 GO:1903827 GO:1904375 GO:1905475
KEGG Pathways
Metabolic & Signaling
ko04130 ko04138 map04130 map04138
Pfam Domains
Protein Families
PX SNARE

Protein Analysis

217

Amino Acids

24.07

Weight (kDa)

9.49

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 159 - 208 9.7e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 499
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 3 cut(s) 114, 526, 570
AclWI GGATC 1 cut(s) 580
AcsI RAATTY 2 cut(s) 8, 511
AfaI GTAC 3 cut(s) 424, 549, 644
AfiI CCNNNNNNNGG 2 cut(s) 499, 526
AgsI TTSAA 3 cut(s) 13, 24, 516
AjnI CCWGG 1 cut(s) 626
AluBI AGCT 4 cut(s) 28, 151, 181, 263
AluI AGCT 4 cut(s) 28, 151, 181, 263
Alw26I GTCTC 2 cut(s) 149, 404
AlwI GGATC 1 cut(s) 580
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 2 cut(s) 322, 391
ApoI RAATTY 2 cut(s) 8, 511
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 3 cut(s) 89, 323, 490
AsuHPI GGTGA 2 cut(s) 72, 616
AvaII GGWCC 2 cut(s) 89, 490
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BauI CACGAG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 628
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 149, 404
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 487
BmcAI AGTACT 2 cut(s) 549, 644
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 2 cut(s) 89, 490
BmgT120I GGNCC 3 cut(s) 89, 323, 490
BmrFI CCNGG 1 cut(s) 628
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 627
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 526
Bse1I ACTGG 3 cut(s) 74, 367, 597
Bse3DI GCAATG 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 499, 526
BseMI GCAATG 1 cut(s) 432
BseNI ACTGG 3 cut(s) 74, 367, 597
BseRI GAGGAG 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 2 cut(s) 324, 393
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 499, 526
BsmAI GTCTC 2 cut(s) 149, 404
BsmBI CGTCTC 1 cut(s) 404
BsnI GGCC 2 cut(s) 324, 393
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 3 cut(s) 265, 460, 585
BspACI CCGC 3 cut(s) 114, 526, 570
BspANI GGCC 2 cut(s) 324, 393
BspEI TCCGGA 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 3 cut(s) 74, 367, 597
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 3 cut(s) 265, 460, 585
BssSI CACGAG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 469
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 30, 243
BstDEI CTNAG 2 cut(s) 140, 177
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 3 cut(s) 268, 463, 588
BstMAI GTCTC 2 cut(s) 149, 404
BstMBI GATC 3 cut(s) 265, 460, 585
BstMWI GCNNNNNNNGC 2 cut(s) 472, 567
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 626
BstSFI CTRYAG 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 324, 393
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 30, 243
Cfr13I GGNCC 3 cut(s) 89, 323, 490
Csp6I GTAC 3 cut(s) 423, 548, 643
CviAII CATG 2 cut(s) 49, 377
CviJI RGCY 9 cut(s) 28, 151, 181, 263, 275, 297, 324, 393, 475
CviKI_1 RGCY 9 cut(s) 28, 151, 181, 263, 275, 297, 324, 393, 475
CviQI GTAC 3 cut(s) 423, 548, 643
DdeI CTNAG 2 cut(s) 140, 177
DpnI GATC 3 cut(s) 267, 462, 587
DpnII GATC 3 cut(s) 265, 460, 585
DraI TTTAAA 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 89, 490
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 626
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 2 cut(s) 52, 380
FaiI YATR 6 cut(s) 50, 108, 110, 290, 347, 378
FatI CATG 2 cut(s) 48, 376
FauI CCCGC 1 cut(s) 519
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 265
FokI GGATG 1 cut(s) 353
FspBI CTAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 324, 393
HapII CCGG 1 cut(s) 57
Hin1II CATG 2 cut(s) 52, 380
HindIII AAGCTT 3 cut(s) 26, 149, 179
HinfI GANTC 2 cut(s) 223, 503
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 72, 616
Hpy166II GTNNAC 1 cut(s) 502
Hpy188III TCNNGA 4 cut(s) 57, 87, 479, 488
Hpy8I GTNNAC 1 cut(s) 502
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 54, 383
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 163, 466, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 567
HpyF3I CTNAG 2 cut(s) 140, 177
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 2 cut(s) 52, 380
Kpn2I TCCGGA 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 265, 460, 585
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 78, 130, 622
MalI GATC 3 cut(s) 267, 462, 587
MboI GATC 3 cut(s) 265, 460, 585
MboII GAAGA 2 cut(s) 135, 346
MluCI AATT 5 cut(s) 8, 401, 511, 539, 618
MlyI GAGTC 1 cut(s) 497
MnlI CCTC 4 cut(s) 94, 400, 445, 465
MroI TCCGGA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 2 cut(s) 368, 639
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 628
MssI GTTTAAAC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 628
MwoI GCNNNNNNNGC 2 cut(s) 472, 567
NdeI CATATG 1 cut(s) 108
NdeII GATC 3 cut(s) 265, 460, 585
NlaIII CATG 2 cut(s) 52, 380
NmuCI GTSAC 2 cut(s) 78, 622
PaqCI CACCTGC 1 cut(s) 487
PceI AGGCCT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 223
PflMI CCANNNNNTGG 1 cut(s) 499
PleI GAGTC 1 cut(s) 497
PmeI GTTTAAAC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspPI GGNCC 3 cut(s) 89, 323, 490
RsaI GTAC 3 cut(s) 424, 549, 644
RsaNI GTAC 3 cut(s) 423, 548, 643
SaqAI TTAA 2 cut(s) 368, 639
Sau3AI GATC 3 cut(s) 265, 460, 585
Sau96I GGNCC 3 cut(s) 89, 323, 490
ScaI AGTACT 2 cut(s) 549, 644
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 628
SetI ASST 9 cut(s) 30, 106, 132, 153, 183, 265, 501, 522, 629
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 2 cut(s) 89, 490
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 5 cut(s) 8, 401, 511, 539, 618
SseBI AGGCCT 1 cut(s) 393
SsiI CCGC 3 cut(s) 114, 526, 570
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 626
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 121
TasI AATT 5 cut(s) 8, 401, 511, 539, 618
TatI WGTACW 2 cut(s) 547, 642
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 368, 639
Tru9I TTAA 2 cut(s) 368, 639
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 78, 622
Tsp45I GTSAC 2 cut(s) 78, 622
TspDTI ATGAA 4 cut(s) 51, 236, 393, 402
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 81
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 89, 490
XapI RAATTY 2 cut(s) 8, 511
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 2 cut(s) 549, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.