Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Reverse (-)

20550049 .. 20552261

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCATCTTCTTCGGACTCATGGATGAAGGAATATAATGAAGCAACAAAACTTGCTGATGATATCAACGGTATGATATCTGAATGGAGTACATTGCCCGCAGGTCCAGACACTCAGCGTCATGTCTCTGCTATACGGCGGAAGAATACAATATTGGGGACTAGACTTGATAGCTTACAGTCCCTTTTGTCAAAACTCCCTGAAAAACAGCATATAACAGAGAAAGAGATGAACCGTCGGAAGGATATGATAGGAAATTTAAGGTTGAAAGTTAAGCAGATGGCTTCAACATTGACGTCCAACACTGCCAACCGAGATAACTTGCTGGGATCAGAAATAAATAAAGCTGATGCCATGGGAAGAACAGTTGGCCTAGACAACTACGGCCTTGTTGGTTTGCAACGACAAATTATGAAAGAGCAAGATGAGGGGCTCGAGAAATTGGAGGAGACTGTAGTAAGCACAAAACATATTGCATTGGCAGTCAATGAAGAACTTGGCCTACACACTAGACTTATTGATGACTTGGATGATCATGTGGAAGTTACAGACTCCCGGTTACGGCGGGTGCAGAAAAACTTGGCAGTTTTGAACAAGCGCACAAAGGGTGGTTGCTCCTGCATGTGCATGCTTTTATCTGTCGTCGGGATAGTGGTTCTGATTGCCGTGATATTTTTGTTGATCAAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

232

Amino Acids

25.83

Weight (kDa)

8.38

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	3 cut(s)	99, 139, 565
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	241, 561
AgsI	TTSAA	3 cut(s)	268, 288, 592
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	174, 347
AluI	AGCT	2 cut(s)	174, 347
Alw26I	GTCTC	2 cut(s)	130, 443
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	370, 385, 499
ApoI	RAATTY	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	435
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	4 cut(s)	152, 400, 578, 650
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	2 cut(s)	532, 681
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	130, 443
BfaI	CTAG	3 cut(s)	162, 374, 510
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	14, 340
BpuMI	CCSGG	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 561
Bse3DI	GCAATG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	30, 535
BseLI	CCNNNNNNNGG	2 cut(s)	241, 561
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	461
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	590
BshFI	GGCC	3 cut(s)	372, 387, 501
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	556
BslFI	GGGAC	2 cut(s)	166, 172
BslI	CCNNNNNNNGG	2 cut(s)	241, 561
BsmAI	GTCTC	2 cut(s)	130, 443
BsmFI	GGGAC	2 cut(s)	166, 172
BsnI	GGCC	3 cut(s)	372, 387, 501
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	329, 532, 681
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	3 cut(s)	99, 139, 565
BspANI	GGCC	3 cut(s)	372, 387, 501
BspCNI	CTCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	329, 532, 681
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	5 cut(s)	71, 180, 236, 367, 454
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	99, 629
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	30, 535
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	3 cut(s)	332, 535, 684
BstMAI	GTCTC	2 cut(s)	130, 443
BstMBI	GATC	3 cut(s)	329, 532, 681
BstNSI	RCATGY	2 cut(s)	625, 631
BstSCI	CCNGG	1 cut(s)	554
BstSFI	CTRYAG	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	372, 387, 501
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	30, 535
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	99, 629
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	6 cut(s)	21, 122, 355, 536, 622, 628
CviJI	RGCY	7 cut(s)	174, 284, 347, 372, 387, 433, 501
CviKI_1	RGCY	7 cut(s)	174, 284, 347, 372, 387, 433, 501
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	331, 534, 683
DpnII	GATC	3 cut(s)	329, 532, 681
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	435
Eco32I	GATATC	2 cut(s)	64, 78
Eco47I	GGWCC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	434
EcoRV	GATATC	2 cut(s)	64, 78
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	6 cut(s)	24, 125, 358, 539, 625, 631
FaqI	GGGAC	2 cut(s)	166, 172
FatI	CATG	6 cut(s)	20, 121, 354, 535, 621, 627
FauI	CCCGC	2 cut(s)	106, 558
FbaI	TGATCA	2 cut(s)	532, 681
FokI	GGATG	2 cut(s)	37, 542
FriOI	GRGCYC	1 cut(s)	435
FspBI	CTAG	3 cut(s)	162, 374, 510
GlaI	GCGC	1 cut(s)	599
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	372, 387, 501
HapII	CCGG	1 cut(s)	556
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	6 cut(s)	24, 125, 358, 539, 625, 631
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	17, 551
HpaII	CCGG	1 cut(s)	556
Hpy188I	TCNGA	5 cut(s)	16, 82, 240, 334, 660
Hpy188III	TCNNGA	3 cut(s)	107, 436, 646
Hpy99I	CGWCG	2 cut(s)	240, 647
HpyAV	CCTTC	2 cut(s)	22, 235
HpyCH4III	ACNGT	5 cut(s)	71, 180, 236, 367, 454
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	5 cut(s)	400, 476, 571, 621, 627
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	6 cut(s)	24, 125, 358, 539, 625, 631
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	2 cut(s)	532, 681
Kzo9I	GATC	3 cut(s)	329, 532, 681
LmnI	GCTCC	1 cut(s)	620
LpnPI	CCDG	6 cut(s)	87, 120, 213, 311, 569, 631
LweI	GCATC	2 cut(s)	14, 340
MaeI	CTAG	3 cut(s)	162, 374, 510
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	544, 558
MalI	GATC	3 cut(s)	331, 534, 683
MboI	GATC	3 cut(s)	329, 532, 681
MboII	GAAGA	4 cut(s)	3, 154, 372, 503
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	3 cut(s)	256, 408, 440
MlyI	GAGTC	2 cut(s)	11, 545
MmeI	TCCRAC	2 cut(s)	218, 324
MnlI	CCTC	2 cut(s)	421, 439
MseI	TTAA	2 cut(s)	260, 273
MslI	CAYNNNNRTG	1 cut(s)	626
MspI	CCGG	1 cut(s)	556
MspR9I	CCNGG	1 cut(s)	556
NciI	CCSGG	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	329, 532, 681
NlaIII	CATG	6 cut(s)	24, 125, 358, 539, 625, 631
NspI	RCATGY	2 cut(s)	625, 631
PaeI	GCATGC	1 cut(s)	631
PaeR7I	CTCGAG	1 cut(s)	434
PleI	GAGTC	2 cut(s)	11, 545
PpsI	GAGTC	2 cut(s)	11, 545
PspFI	CCCAGC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	104
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	260, 273
Sau3AI	GATC	3 cut(s)	329, 532, 681
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	2 cut(s)	11, 545
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	5 cut(s)	106, 176, 266, 299, 349
SfaNI	GCATC	2 cut(s)	14, 340
SfcI	CTRYAG	1 cut(s)	453
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	631
Sse9I	AATT	3 cut(s)	256, 408, 440
SsiI	CCGC	3 cut(s)	99, 139, 565
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	3 cut(s)	162, 374, 510
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	5 cut(s)	71, 180, 236, 367, 454
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	435
TasI	AATT	3 cut(s)	256, 408, 440
TatI	WGTACW	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	260, 273
Tru9I	TTAA	2 cut(s)	260, 273
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	41, 54, 245, 428, 504
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	2 cut(s)	625, 631
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	3 cut(s)	162, 374, 510
ZraI	GACGTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.