Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385815.1

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1140

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385815.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgatatctgaacggagttcatttcccgcatcaggtccagaaactcagcgtcatgtctctgctattcggaggaaaattacaatattggggactagacttgatagcttacagtccgaattgtcaacacttcctggaaagcagcccataacagccaaagagatgaatcgtcggaaggacatggttgcaaatttgagatcaaaagttaaccagatgtcttcaacgttgacatcaaactctggtaacagagacagcttgcttggacctgaaataagtaaagctgatgccatgggccgagcagctggcctggacaactatggccttgttggtctacagcgacaagttatgaaagagcaagatgaggggcttgacaaattggaggagactgtagtaagcacaaaacatattgcattggcagtcaatgaggaactcaccctgcacactaggcttattgatgatttggatgaacatgtggatgttactaactcccggctacgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

165

Amino Acids

18.25

Weight (kDa)

6.92

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	328
AciI	CCGC	1 cut(s)	27
AclI	AACGTT	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	32, 492
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	130, 303
AluBI	AGCT	4 cut(s)	105, 252, 278, 299
AluI	AGCT	4 cut(s)	105, 252, 278, 299
Alw26I	GTCTC	3 cut(s)	61, 240, 374
AoxI	GGCC	3 cut(s)	289, 301, 316
ApeKI	GCWGC	2 cut(s)	139, 296
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	35, 260, 289
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	35, 260
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	151, 308
BciT130I	CCWGG	2 cut(s)	132, 305
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	3 cut(s)	61, 240, 374
BfaI	CTAG	2 cut(s)	93, 441
BfmI	CTRYAG	2 cut(s)	329, 384
BisI	GCNGC	2 cut(s)	140, 297
BlsI	GCNGC	2 cut(s)	141, 298
Bme1390I	CCNGG	3 cut(s)	132, 305, 487
Bme18I	GGWCC	2 cut(s)	35, 260
BmgT120I	GGNCC	3 cut(s)	35, 260, 289
BmrFI	CCNGG	3 cut(s)	132, 305, 487
BmsI	GCATC	2 cut(s)	38, 271
BpiI	GAAGAC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	487
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 492
BseBI	CCWGG	2 cut(s)	132, 305
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	466, 478
BseLI	CCNNNNNNNGG	2 cut(s)	32, 492
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	151, 308
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	291, 303, 318
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	32, 492
BsmAI	GTCTC	3 cut(s)	61, 240, 374
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	291, 303, 318
Bsp143I	GATC	1 cut(s)	194
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	291, 303, 318
BspCNI	CTCAG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	132, 305
Bst4CI	ACNGT	2 cut(s)	111, 385
BstC8I	GCNNGC	2 cut(s)	254, 301
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	466, 478
BstKTI	GATC	1 cut(s)	197
BstMAI	GTCTC	3 cut(s)	61, 240, 374
BstMBI	GATC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	2 cut(s)	132, 305
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	130, 303, 485
BstSFI	CTRYAG	2 cut(s)	329, 384
BstV1I	GCAGC	2 cut(s)	151, 308
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	291, 303, 318
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	466, 478
Cac8I	GCNNGC	2 cut(s)	254, 301
Cfr13I	GGNCC	3 cut(s)	35, 260, 289
CseI	GACGC	1 cut(s)	38
CviAII	CATG	4 cut(s)	53, 178, 286, 467
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	35, 260
EcoRII	CCWGG	2 cut(s)	130, 303
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	56, 181, 289, 470
FaiI	YATR	8 cut(s)	54, 146, 179, 287, 315, 344, 402, 468
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	52, 177, 285, 466
FauI	CCCGC	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	140, 297
FokI	GGATG	2 cut(s)	473, 485
Fsp4HI	GCNGC	2 cut(s)	140, 297
FspBI	CTAG	2 cut(s)	93, 441
GluI	GCNGC	2 cut(s)	140, 297
HaeIII	GGCC	3 cut(s)	291, 303, 318
HapII	CCGG	1 cut(s)	487
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	56, 181, 289, 470
HincII	GTYRAC	3 cut(s)	123, 205, 225
HindII	GTYRAC	3 cut(s)	123, 205, 225
HinfI	GANTC	1 cut(s)	163
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	4 cut(s)	123, 205, 225, 329
Hpy188I	TCNGA	4 cut(s)	10, 69, 115, 171
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	4 cut(s)	123, 205, 225, 329
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	111, 385
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	185, 407, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	56, 181, 289, 470
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	194
Lsp1109I	GCAGC	2 cut(s)	151, 308
LweI	GCATC	2 cut(s)	38, 271
MaeI	CTAG	2 cut(s)	93, 441
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	239, 475
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MboII	GAAGA	1 cut(s)	207
MluCI	AATT	4 cut(s)	75, 116, 187, 371
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	63, 352, 370, 415
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	3 cut(s)	132, 305, 487
MvaI	CCWGG	2 cut(s)	132, 305
MwoI	GCNNNNNNNGC	1 cut(s)	442
NciI	CCSGG	1 cut(s)	487
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	4 cut(s)	56, 181, 289, 470
NmeAIII	GCCGAG	1 cut(s)	317
NspI	RCATGY	1 cut(s)	470
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	141, 298
PscI	ACATGT	1 cut(s)	466
Psp1406I	AACGTT	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	130, 303
PspGI	CCWGG	2 cut(s)	130, 303
PspPI	GGNCC	3 cut(s)	35, 260, 289
PvuII	CAGCTG	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	140, 297
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	3 cut(s)	35, 260, 289
ScrFI	CCNGG	3 cut(s)	132, 305, 487
SetI	ASST	7 cut(s)	37, 107, 224, 254, 265, 280, 301
SfaNI	GCATC	2 cut(s)	38, 271
SfcI	CTRYAG	2 cut(s)	329, 384
SinI	GGWCC	2 cut(s)	35, 260
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	4 cut(s)	75, 116, 187, 371
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	2 cut(s)	93, 441
StyD4I	CCNGG	3 cut(s)	130, 303, 485
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	111, 385
TaiI	ACGT	1 cut(s)	224
TasI	AATT	4 cut(s)	75, 116, 187, 371
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	139, 296
TspDTI	ATGAA	4 cut(s)	9, 176, 359, 477
TspGWI	ACGGA	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	35, 260
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	328
XspI	CTAG	2 cut(s)	93, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.