Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Forward (+)

16732286 .. 16735639

Gene Structure 3354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCATCTTCTTCGGACTCATGGATGAAGGAATATAACGAAGCAGTAAAGCTTTCTGATGATATCAGTGGTATGATATCTGAGCGGAGTTCATTTCCCGCATCAGGTCCAGAAACTCAGCGCCATGTCTCTGCTATTCGGAGGAAAATTACAATATTGGGGACTAGACTTGATAGCTTACAGTCCGAATTGTCAACACTTCCTGGAAAGCAGCACATAACAGCCAAAGAGATGAATCGTCGGAAGGACATGATTGCAAATTTGAAATCAAAAGTCAGCCAGATGTCTTCAACATTGACATCGCACTCTGGTAACAGAGACAGCTTGCTAGGACCTGAAATAAGTAAAGCTGATGCCATGGGCCGAACAGCTGGCCTGGACAACTATGGCCTTGTTGGTCTTCAGCGACAAGTTATGAAAGAGCAAGATGAGGGGCTTGACAGATTGGAGGAGACTGTAGTAAGCACAAAACATATTGCATTGGCAGTCAACGAGGAACTCACCCTGCACACTAGACTTATTGACGATTTGGACGAACATGTGGATGTTACTGACTCTCGGTTACAGCGAGTGCAGAAGAACTTAGCAGCTCTGAACAAACGTACAAAGGGTGGTTGCTCCTGCATGTGCATGCTTTTAGCTGTTCTTGGTATTGTTGGCCTGGTTGCTGTGATATTTTTGCTGATCAAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

233

Amino Acids

25.55

Weight (kDa)

7.75

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	173 - 223	1.2e-10	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	2 cut(s)	85, 99
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	2 cut(s)	265, 291
AjnI	CCWGG	3 cut(s)	202, 375, 660
AluBI	AGCT	7 cut(s)	52, 177, 324, 350, 371, 590, 641
AluI	AGCT	7 cut(s)	52, 177, 324, 350, 371, 590, 641
Alw26I	GTCTC	3 cut(s)	133, 312, 446
AoxI	GGCC	4 cut(s)	361, 373, 388, 658
ApeKI	GCWGC	2 cut(s)	211, 587
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	107, 332, 361
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	2 cut(s)	107, 332
BbsI	GAAGAC	2 cut(s)	279, 392
BbvI	GCAGC	2 cut(s)	223, 599
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	3 cut(s)	204, 377, 662
BclI	TGATCA	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	133, 312, 446
BfaI	CTAG	3 cut(s)	165, 329, 513
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	2 cut(s)	212, 588
BlsI	GCNGC	2 cut(s)	213, 589
Bme1390I	CCNGG	3 cut(s)	204, 377, 662
Bme18I	GGWCC	2 cut(s)	107, 332
BmgT120I	GGNCC	3 cut(s)	107, 332, 361
BmrFI	CCNGG	3 cut(s)	204, 377, 662
BmsI	GCATC	3 cut(s)	14, 110, 343
BpiI	GAAGAC	2 cut(s)	279, 392
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	3 cut(s)	204, 377, 662
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	30, 550
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	72, 131
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	223, 599
BsgI	GTGCAG	2 cut(s)	491, 593
BshFI	GGCC	4 cut(s)	363, 375, 390, 660
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	133, 312, 446
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	4 cut(s)	363, 375, 390, 660
Bsp143I	GATC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	85, 99
BspANI	GGCC	4 cut(s)	363, 375, 390, 660
BspCNI	CTCAG	2 cut(s)	73, 130
BsrBI	CCGCTC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	204, 377, 662
Bst4CI	ACNGT	2 cut(s)	183, 457
BstC8I	GCNNGC	3 cut(s)	326, 373, 632
BstDEI	CTNAG	3 cut(s)	81, 117, 583
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	30, 550
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	687
BstMAI	GTCTC	3 cut(s)	133, 312, 446
BstMBI	GATC	1 cut(s)	684
BstNI	CCWGG	3 cut(s)	204, 377, 662
BstNSI	RCATGY	3 cut(s)	542, 628, 634
BstSCI	CCNGG	3 cut(s)	202, 375, 660
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	223, 599
BstV2I	GAAGAC	2 cut(s)	279, 392
BsuRI	GGCC	4 cut(s)	363, 375, 390, 660
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	30, 550
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	326, 373, 632
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	107, 332, 361
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	7 cut(s)	21, 125, 250, 358, 539, 625, 631
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	3 cut(s)	81, 117, 583
DpnI	GATC	1 cut(s)	686
DpnII	GATC	1 cut(s)	684
Eco130I	CCWWGG	1 cut(s)	357
Eco32I	GATATC	2 cut(s)	64, 78
Eco47I	GGWCC	2 cut(s)	107, 332
Eco57I	CTGAAG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	202, 375, 660
EcoRV	GATATC	2 cut(s)	64, 78
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	7 cut(s)	24, 128, 253, 361, 542, 628, 634
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	7 cut(s)	20, 124, 249, 357, 538, 624, 630
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	2 cut(s)	212, 588
FokI	GGATG	2 cut(s)	37, 557
Fsp4HI	GCNGC	2 cut(s)	212, 588
FspBI	CTAG	3 cut(s)	165, 329, 513
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	212, 588
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	4 cut(s)	363, 375, 390, 660
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	7 cut(s)	24, 128, 253, 361, 542, 628, 634
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	195, 490
HindII	GTYRAC	2 cut(s)	195, 490
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	3 cut(s)	17, 235, 554
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	195, 490
Hpy188I	TCNGA	7 cut(s)	16, 58, 82, 141, 187, 243, 594
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	195, 490
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	22, 238
HpyCH4III	ACNGT	2 cut(s)	183, 457
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	6 cut(s)	257, 479, 508, 574, 624, 630
HpyF3I	CTNAG	3 cut(s)	81, 117, 583
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	7 cut(s)	24, 128, 253, 361, 542, 628, 634
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	1 cut(s)	684
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	2 cut(s)	223, 599
LweI	GCATC	3 cut(s)	14, 110, 343
MaeI	CTAG	3 cut(s)	165, 329, 513
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	311, 547, 561
MalI	GATC	1 cut(s)	686
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	1 cut(s)	684
MboII	GAAGA	4 cut(s)	3, 279, 392, 589
MluCI	AATT	3 cut(s)	147, 188, 259
MlyI	GAGTC	2 cut(s)	11, 548
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	135, 424, 442, 487
MslI	CAYNNNNRTG	2 cut(s)	543, 629
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	204, 377, 662
MvaI	CCWGG	3 cut(s)	204, 377, 662
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	684
NlaIII	CATG	7 cut(s)	24, 128, 253, 361, 542, 628, 634
NspI	RCATGY	3 cut(s)	542, 628, 634
PaeI	GCATGC	1 cut(s)	634
PciI	ACATGT	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	531, 565
PfeI	GAWTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	213, 589
PleI	GAGTC	2 cut(s)	11, 548
PpsI	GAGTC	2 cut(s)	11, 548
PpuMI	RGGWCCY	1 cut(s)	332
PscI	ACATGT	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	202, 375, 660
PspGI	CCWGG	3 cut(s)	202, 375, 660
PspPI	GGNCC	3 cut(s)	107, 332, 361
PspPPI	RGGWCCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	2 cut(s)	543, 629
SatI	GCNGC	2 cut(s)	212, 588
Sau3AI	GATC	1 cut(s)	684
Sau96I	GGNCC	3 cut(s)	107, 332, 361
SchI	GAGTC	2 cut(s)	11, 548
ScrFI	CCNGG	3 cut(s)	204, 377, 662
SfaNI	GCATC	3 cut(s)	14, 110, 343
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	107, 332
SmiMI	CAYNNNNRTG	2 cut(s)	543, 629
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	3 cut(s)	147, 188, 259
SsiI	CCGC	2 cut(s)	85, 99
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	3 cut(s)	165, 329, 513
StyD4I	CCNGG	3 cut(s)	202, 375, 660
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	183, 457
TaiI	ACGT	1 cut(s)	604
TasI	AATT	3 cut(s)	147, 188, 259
TfiI	GAWTC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	211, 587
TspDTI	ATGAA	4 cut(s)	41, 81, 248, 431
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	107, 332
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	3 cut(s)	542, 628, 634
XspI	CTAG	3 cut(s)	165, 329, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.