Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Forward (+)

38110022 .. 38113048

Gene Structure 3027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCAATTTCTTTTTCTTCAATTCTGGAATATATTGGGTTGTTTGGGGTTTCCATCAATGGCATCTTCTTCGGACTCATGGATGAAGGAGTATAATGAAGCAGTAAAACTTGCTGATGATATCGGTGGTATGATATCTGAACGGAGTTCATTTCCCGCATCAGGTCCAGAAACTCAGCGTCATGTCTCTGCTATTCGGAGGAAAATTACAATATTGGGGACTAGACTTGATAGCTTACAGTCCGAATTGTCAACACTTCCTGGAAAGCAGCCCATAACAGCCAAAGAGATGAATCGTCGGAAGGACATGGTTGCAAATTTGAGATCAAAAGTTAACCAGATGTCTTCAACGTTGACATCAAACTCTGGTAACAGAGACAGCTTGCTTGGACCTGAAATAAGTAAAGCTGATGCCATGGGCCGAGCAGCTGGCCTGGACAACTATGGCCTTGTTGGTCTTCAGCGACAAGTTATGAAAGAGCAAGATGAGGGGCTTGACAAATTGGAGGAGACTGTAGTAAGCACAAAACATATTGCATTGGAGTCAATGAGGAACTCACCCTGCACACTAGGCTTATTGTACGATGATTTGGATGAACATGTGGATGTTACTAACTCCCGGCTACGGCGAGTGCAGAAGAACTTGGCAGCTTTGAACAAACGCACAAAGGGTGGTTGCTCGTGTATGTGCATGCTTTTAGCTGTTCTCGGTATTGTGGGCCTGGTTGCTGTGATATTTTTGCTGATCAAATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

252

Amino Acids

27.77

Weight (kDa)

8.79

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	195 - 243	2.6e-09	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclI	AACGTT	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	161, 624
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	20, 348, 655
AjnI	CCWGG	3 cut(s)	259, 432, 720
AluBI	AGCT	6 cut(s)	234, 381, 407, 428, 650, 701
AluI	AGCT	6 cut(s)	234, 381, 407, 428, 650, 701
Alw26I	GTCTC	3 cut(s)	190, 369, 503
AoxI	GGCC	4 cut(s)	418, 430, 445, 718
ApeKI	GCWGC	3 cut(s)	268, 425, 647
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	4 cut(s)	164, 389, 418, 718
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	549
AvaII	GGWCC	2 cut(s)	164, 389
BauI	CACGAG	1 cut(s)	679
BbsI	GAAGAC	2 cut(s)	336, 449
BbvI	GCAGC	3 cut(s)	280, 437, 659
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	3 cut(s)	261, 434, 722
BclI	TGATCA	1 cut(s)	744
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	3 cut(s)	190, 369, 503
BfaI	CTAG	2 cut(s)	222, 569
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	3 cut(s)	269, 426, 648
BlsI	GCNGC	3 cut(s)	270, 427, 649
Bme1390I	CCNGG	4 cut(s)	261, 434, 619, 722
Bme18I	GGWCC	2 cut(s)	164, 389
BmgT120I	GGNCC	4 cut(s)	164, 389, 418, 718
BmrFI	CCNGG	4 cut(s)	261, 434, 619, 722
BmsI	GCATC	3 cut(s)	71, 167, 400
BpiI	GAAGAC	2 cut(s)	336, 449
BpuMI	CCSGG	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 624
BseBI	CCWGG	3 cut(s)	261, 434, 722
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	3 cut(s)	87, 598, 610
BseLI	CCNNNNNNNGG	2 cut(s)	161, 624
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	280, 437, 659
BsgI	GTGCAG	2 cut(s)	547, 653
BshFI	GGCC	4 cut(s)	420, 432, 447, 720
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	161, 624
BsmAI	GTCTC	3 cut(s)	190, 369, 503
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	420, 432, 447, 720
Bsp143I	GATC	2 cut(s)	323, 744
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	4 cut(s)	420, 432, 447, 720
BspCNI	CTCAG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	2 cut(s)	323, 744
BssSI	CACGAG	1 cut(s)	679
BssT1I	CCWWGG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	679
Bst2UI	CCWGG	3 cut(s)	261, 434, 722
Bst4CI	ACNGT	2 cut(s)	240, 514
BstC8I	GCNNGC	3 cut(s)	383, 430, 692
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	87, 598, 610
BstKTI	GATC	2 cut(s)	326, 747
BstMAI	GTCTC	3 cut(s)	190, 369, 503
BstMBI	GATC	2 cut(s)	323, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	3 cut(s)	261, 434, 722
BstNSI	RCATGY	2 cut(s)	602, 694
BstSCI	CCNGG	4 cut(s)	259, 432, 617, 720
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	280, 437, 659
BstV2I	GAAGAC	2 cut(s)	336, 449
BsuRI	GGCC	4 cut(s)	420, 432, 447, 720
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	87, 598, 610
Cac8I	GCNNGC	3 cut(s)	383, 430, 692
Cfr13I	GGNCC	4 cut(s)	164, 389, 418, 718
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	6 cut(s)	78, 182, 307, 415, 599, 691
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	325, 746
DpnII	GATC	2 cut(s)	323, 744
Eco130I	CCWWGG	1 cut(s)	414
Eco32I	GATATC	2 cut(s)	121, 135
Eco47I	GGWCC	2 cut(s)	164, 389
Eco57I	CTGAAG	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	259, 432, 720
EcoRV	GATATC	2 cut(s)	121, 135
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	6 cut(s)	81, 185, 310, 418, 602, 694
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	6 cut(s)	77, 181, 306, 414, 598, 690
FauI	CCCGC	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	269, 426, 648
FokI	GGATG	3 cut(s)	94, 605, 617
Fsp4HI	GCNGC	3 cut(s)	269, 426, 648
FspBI	CTAG	2 cut(s)	222, 569
GluI	GCNGC	3 cut(s)	269, 426, 648
HaeIII	GGCC	4 cut(s)	420, 432, 447, 720
HapII	CCGG	1 cut(s)	619
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	6 cut(s)	81, 185, 310, 418, 602, 694
HincII	GTYRAC	3 cut(s)	252, 334, 354
HindII	GTYRAC	3 cut(s)	252, 334, 354
HinfI	GANTC	3 cut(s)	74, 292, 542
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	1 cut(s)	549
Hpy166II	GTNNAC	3 cut(s)	252, 334, 354
Hpy188I	TCNGA	5 cut(s)	73, 139, 198, 244, 300
Hpy188III	TCNNGA	2 cut(s)	25, 167
Hpy8I	GTNNAC	3 cut(s)	252, 334, 354
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	79, 295
HpyCH4III	ACNGT	2 cut(s)	240, 514
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	4, 314, 536, 564, 634, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	6 cut(s)	81, 185, 310, 418, 602, 694
Ksp22I	TGATCA	1 cut(s)	744
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	323, 744
Lsp1109I	GCAGC	3 cut(s)	280, 437, 659
LweI	GCATC	3 cut(s)	71, 167, 400
MaeI	CTAG	2 cut(s)	222, 569
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	368, 607
MalI	GATC	2 cut(s)	325, 746
MboI	GATC	2 cut(s)	323, 744
MboII	GAAGA	6 cut(s)	8, 57, 60, 336, 449, 649
MluCI	AATT	6 cut(s)	5, 20, 204, 245, 316, 500
MlyI	GAGTC	2 cut(s)	68, 551
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	192, 481, 499, 543
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	4 cut(s)	261, 434, 619, 722
MvaI	CCWGG	3 cut(s)	261, 434, 722
MwoI	GCNNNNNNNGC	1 cut(s)	570
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	323, 744
NlaIII	CATG	6 cut(s)	81, 185, 310, 418, 602, 694
NmeAIII	GCCGAG	1 cut(s)	446
NspI	RCATGY	2 cut(s)	602, 694
PaeI	GCATGC	1 cut(s)	694
PciI	ACATGT	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	270, 427, 649
PleI	GAGTC	2 cut(s)	68, 550
PpsI	GAGTC	2 cut(s)	68, 550
PscI	ACATGT	1 cut(s)	598
Psp1406I	AACGTT	1 cut(s)	350
Psp6I	CCWGG	3 cut(s)	259, 432, 720
PspGI	CCWGG	3 cut(s)	259, 432, 720
PspPI	GGNCC	4 cut(s)	164, 389, 418, 718
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	269, 426, 648
Sau3AI	GATC	2 cut(s)	323, 744
Sau96I	GGNCC	4 cut(s)	164, 389, 418, 718
SchI	GAGTC	2 cut(s)	68, 551
ScrFI	CCNGG	4 cut(s)	261, 434, 619, 722
SetI	ASST	9 cut(s)	166, 236, 353, 383, 394, 409, 430, 652, 703
SfaNI	GCATC	3 cut(s)	71, 167, 400
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	164, 389
SmiMI	CAYNNNNRTG	1 cut(s)	603
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	6 cut(s)	5, 20, 204, 245, 316, 500
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	2 cut(s)	222, 569
StyD4I	CCNGG	4 cut(s)	259, 432, 617, 720
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	240, 514
TaiI	ACGT	1 cut(s)	353
TasI	AATT	6 cut(s)	5, 20, 204, 245, 316, 500
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	3 cut(s)	268, 425, 647
TspDTI	ATGAA	6 cut(s)	98, 111, 138, 305, 488, 609
TspGWI	ACGGA	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	164, 389
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	602, 694
XspI	CTAG	2 cut(s)	222, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.