Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003230

Physical Location & Seq

Genomic Coordinates Forward (+)

37131924 .. 37135806

Gene Structure 3883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG294200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCATCTTCTTCGGACTCATGGATGAAGGAGTATAATGAAGCAGTAAAACTTGCTGATGATATCGGTGGTATGATATCTGAACGGAGTTCATTTCCCGCTTCAGGTCCAGAAACTCAGCGTCATGTCTCTGCTATTCGGAGGAAAATTACAATATTGGGGACTAGACTTGATAGCTTACAGTCCGAATTGTCAACACTTCCTGGAAAGCAGCCCATAACAGCCAAAGAGATGAATCGTCGGAAGGACATGGTTGCAAATTTGAGATCAAAAGTTAACCAGATGTCTTCAACGTTGACATCAAACTCTGGTAACAGAGACAGCTTGCTTGGACCTGAAATAAGTAAAGCTGAGGCCATGGGCCGAGCAGCTGGCCTGGACAACTATGGCCTTGTTGGTCTTCAGCGACAAGTTATGAAAGAGCAAGATGAGGGGCTTGACAAATTGGAGGAGACTGTAGTAAGCACAAAACATATTGCATTGGCAGTCAATGAGGAACTCACCCTGCACACTAGGCTTATTGATGATTTGGATGAACATGTGGATGTTACTAACTCCCGGCTACGGGTAATGTTATCATTTATGGATTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

198

Amino Acids

21.95

Weight (kDa)

5.86

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16240 AT1G16240 AT1G16240 AT1G16240 AT1G79590 AT1G79590 AT1G79590
fragaria_vesca	FvH4_3g23630 FvH4_3g23630 FvH4_3g23630
malus_domestica	MD03G1192400.v1.1 MD11G1208900.v1.1 MD12G1111800.v1.1
prunus_persica	Prupe.4G224800_v2.0.a1 Prupe.4G224800_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1 Prupe.7G022100_v2.0.a1
pyrus_communis	pycom03g14480 pycom11g18380 pycom12g09190
rosa_chinensis	RchiOBHm_Chr5g0041671
rosa_laevigata	RLG00000034089
rosa_multiflora	Rmu_co8385815.1_g000001 Rmu_sc0000861.1_g000017 Rmu_sc0005255.1_g000053
rosa_roxburghii	Rroxscaffold_1G00038830
rosa_rugosa	Rorug05G0194600 Rorug05G0194700
rosa_samantha	Rh5AG279900 Rh5BG285400 Rh5DG294200
rosa_wichuraiana	Rw0G011100 Rw5G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AclI	AACGTT	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	2 cut(s)	87, 386
AfiI	CCNNNNNNNGG	3 cut(s)	104, 564, 565
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	291
AjnI	CCWGG	2 cut(s)	202, 375
AluBI	AGCT	4 cut(s)	177, 324, 350, 371
AluI	AGCT	4 cut(s)	177, 324, 350, 371
Alw26I	GTCTC	3 cut(s)	133, 312, 446
AoxI	GGCC	4 cut(s)	354, 361, 373, 388
ApeKI	GCWGC	2 cut(s)	211, 368
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	3 cut(s)	107, 332, 361
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	2 cut(s)	107, 332
BbsI	GAAGAC	2 cut(s)	279, 392
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	223, 380
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	204, 377
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	133, 312, 446
BfaI	CTAG	2 cut(s)	165, 513
BfmI	CTRYAG	1 cut(s)	456
BisI	GCNGC	2 cut(s)	212, 369
BlsI	GCNGC	2 cut(s)	213, 370
Bme1390I	CCNGG	3 cut(s)	204, 377, 559
Bme18I	GGWCC	2 cut(s)	107, 332
BmgT120I	GGNCC	3 cut(s)	107, 332, 361
BmrFI	CCNGG	3 cut(s)	204, 377, 559
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	279, 392
Bpu10I	CCTNAGC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 564, 565
BseBI	CCWGG	2 cut(s)	204, 377
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	30, 538, 550
BseLI	CCNNNNNNNGG	3 cut(s)	104, 564, 565
BseMII	CTCAG	2 cut(s)	131, 342
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	223, 380
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	4 cut(s)	356, 363, 375, 390
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	104, 564, 565
BsmAI	GTCTC	3 cut(s)	133, 312, 446
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	4 cut(s)	356, 363, 375, 390
Bsp143I	GATC	1 cut(s)	266
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	4 cut(s)	356, 363, 375, 390
BspCNI	CTCAG	2 cut(s)	130, 343
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	204, 377
Bst4CI	ACNGT	2 cut(s)	183, 457
BstC8I	GCNNGC	2 cut(s)	326, 373
BstDEI	CTNAG	2 cut(s)	117, 351
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	30, 538, 550
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	3 cut(s)	133, 312, 446
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNI	CCWGG	2 cut(s)	204, 377
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	3 cut(s)	202, 375, 557
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	223, 380
BstV2I	GAAGAC	2 cut(s)	279, 392
BsuRI	GGCC	4 cut(s)	356, 363, 375, 390
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	30, 538, 550
Cac8I	GCNNGC	2 cut(s)	326, 373
Cfr13I	GGNCC	3 cut(s)	107, 332, 361
CseI	GACGC	1 cut(s)	110
CviAII	CATG	5 cut(s)	21, 125, 250, 358, 539
DdeI	CTNAG	2 cut(s)	117, 351
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DraI	TTTAAA	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	357
Eco32I	GATATC	2 cut(s)	64, 78
Eco47I	GGWCC	2 cut(s)	107, 332
Eco57I	CTGAAG	2 cut(s)	87, 386
EcoRII	CCWGG	2 cut(s)	202, 375
EcoRV	GATATC	2 cut(s)	64, 78
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	24, 128, 253, 361, 542
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	5 cut(s)	20, 124, 249, 357, 538
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	212, 369
FokI	GGATG	3 cut(s)	37, 545, 557
Fsp4HI	GCNGC	2 cut(s)	212, 369
FspBI	CTAG	2 cut(s)	165, 513
GluI	GCNGC	2 cut(s)	212, 369
HaeIII	GGCC	4 cut(s)	356, 363, 375, 390
HapII	CCGG	1 cut(s)	559
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	5 cut(s)	24, 128, 253, 361, 542
HincII	GTYRAC	3 cut(s)	195, 277, 297
HindII	GTYRAC	3 cut(s)	195, 277, 297
HinfI	GANTC	2 cut(s)	17, 235
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	3 cut(s)	195, 277, 297
Hpy188I	TCNGA	5 cut(s)	16, 82, 141, 187, 243
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	3 cut(s)	195, 277, 297
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	22, 238
HpyCH4III	ACNGT	2 cut(s)	183, 457
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	257, 479, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	2 cut(s)	117, 351
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	5 cut(s)	24, 128, 253, 361, 542
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	266
Lsp1109I	GCAGC	2 cut(s)	223, 380
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	165, 513
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	311, 547
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	3 cut(s)	3, 279, 392
MluCI	AATT	4 cut(s)	147, 188, 259, 443
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	135, 346, 424, 442, 487
MseI	TTAA	2 cut(s)	276, 591
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	3 cut(s)	204, 377, 559
MvaI	CCWGG	2 cut(s)	204, 377
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	5 cut(s)	24, 128, 253, 361, 542
NmeAIII	GCCGAG	1 cut(s)	389
NspI	RCATGY	1 cut(s)	542
PciI	ACATGT	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	213, 370
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PscI	ACATGT	1 cut(s)	538
Psp1406I	AACGTT	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	202, 375
PspGI	CCWGG	2 cut(s)	202, 375
PspPI	GGNCC	3 cut(s)	107, 332, 361
PvuII	CAGCTG	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	276, 591
SatI	GCNGC	2 cut(s)	212, 369
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	3 cut(s)	107, 332, 361
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	3 cut(s)	204, 377, 559
SetI	ASST	7 cut(s)	109, 179, 296, 326, 337, 352, 373
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	107, 332
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	4 cut(s)	147, 188, 259, 443
SsiI	CCGC	1 cut(s)	99
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	2 cut(s)	165, 513
StyD4I	CCNGG	3 cut(s)	202, 375, 557
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	183, 457
TaiI	ACGT	1 cut(s)	296
TasI	AATT	4 cut(s)	147, 188, 259, 443
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	276, 591
Tru9I	TTAA	2 cut(s)	276, 591
TseI	GCWGC	2 cut(s)	211, 368
TspDTI	ATGAA	6 cut(s)	41, 54, 81, 248, 431, 549
TspGWI	ACGGA	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	107, 332
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	542
XspI	CTAG	2 cut(s)	165, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.