AT1G17410

Nucleoside diphosphate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008671
Physical Location & Seq
Reverse (-)
5968410 .. 5969995
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17410.3

Sequence Viewer

Length: 546 bp
ATGTCAGGAATCACATATCAAATATTGTTCCTCCTCCTTCTCGCCTCTGTCTCCTTGTCGCCGGTCAGGTGTTTAGGTTATGGAGCAAGTAGTGAAGAGAGAACATTGGCTATGATAAAGCCAGATGGAGTCTCTGGTAACTATACTGAAGAAATCAAAACGATCGTCGTTGAGGCTGGTTTCAATATCGTCAAGGAGATGCTTACTCAGCTGGACAAGGAGACAGCTTCTGCGTTTTACGAGGAGCACTCATCGAGGAGCTTTTTTCCTCATCTTGTTACATACATGACGAGTGGTCCGGTGTTGGTGATGGTATTGGAGAAGCGAAATGCAGTTTCTGATTGGCGTGATTTAATCGGTCCAACAGATGCGGAAAAGGCTAAGATATCTCACCCTCACAGCATCAGAGCATTATGTGGTAAGAACTCACAGAAGAACTGTGTGCACGGCTCGGATTCAACATCGTCAGCTGAAAGAGAGATAAAGTTTTTCTTCAAGGATGTAGTTTCAGGTGACATTGCTACACAACAACATGACGAACTATAA

Protein Analysis

181

Amino Acids

19.99

Weight (kDa)

5.67

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDK PF00334 1 - 91 1.8e-29 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 3 cut(s) 184, 459, 496
AhdI GACNNNNNGTC 1 cut(s) 294
AluBI AGCT 4 cut(s) 211, 227, 261, 470
AluI AGCT 4 cut(s) 211, 227, 261, 470
Alw21I GWGCWC 2 cut(s) 249, 447
Alw26I GTCTC 3 cut(s) 55, 136, 215
Alw44I GTGCAC 1 cut(s) 443
AlwNI CAGNNNCTG 2 cut(s) 230, 338
ApaLI GTGCAC 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AspS9I GGNCC 2 cut(s) 296, 359
AsuHPI GGTGA 3 cut(s) 319, 383, 524
AvaII GGWCC 2 cut(s) 296, 359
BaeGI GKGCMC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 249, 447
BccI CCATC 2 cut(s) 119, 304
BceAI ACGGC 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 55, 136, 215
Bme18I GGWCC 2 cut(s) 296, 359
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 296, 359
BmsI GCATC 3 cut(s) 189, 358, 411
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaWI WCCGGW 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 61
Bse3DI GCAATG 1 cut(s) 516
BseGI GGATG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 221
BseRI GAGGAG 3 cut(s) 23, 257, 271
BseSI GKGCMC 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 249, 447
BsiSI CCGG 2 cut(s) 62, 299
BsmAI GTCTC 3 cut(s) 55, 136, 215
Bsp1286I GDGCHC 2 cut(s) 249, 447
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 207, 381
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 3 cut(s) 55, 136, 215
BstMBI GATC 1 cut(s) 162
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 208, 377
BstSLI GKGCMC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 505
CaiI CAGNNNCTG 2 cut(s) 230, 338
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 296, 359
CviAII CATG 2 cut(s) 286, 533
CviJI RGCY 9 cut(s) 110, 121, 176, 211, 227, 261, 380, 450, 470
CviKI_1 RGCY 9 cut(s) 110, 121, 176, 211, 227, 261, 380, 450, 470
DdeI CTNAG 2 cut(s) 207, 381
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DriI GACNNNNNGTC 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 296, 359
Eco57I CTGAAG 1 cut(s) 168
EcoRV GATATC 1 cut(s) 387
FaeI CATG 2 cut(s) 289, 536
FaiI YATR 9 cut(s) 16, 81, 113, 144, 283, 287, 415, 534, 544
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FatI CATG 2 cut(s) 285, 532
FokI GGATG 1 cut(s) 512
HapII CCGG 2 cut(s) 62, 299
Hin1II CATG 2 cut(s) 289, 536
HinfI GANTC 3 cut(s) 9, 129, 455
HpaII CCGG 2 cut(s) 62, 299
HphI GGTGA 3 cut(s) 319, 383, 524
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 340, 407, 454
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 2 cut(s) 332, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 377
HpyF3I CTNAG 2 cut(s) 207, 381
Hsp92II CATG 2 cut(s) 289, 536
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 3 cut(s) 83, 244, 258
LpnPI CCDG 8 cut(s) 52, 75, 120, 135, 162, 197, 312, 495
LweI GCATC 3 cut(s) 189, 358, 411
MaeIII GTNAC 3 cut(s) 137, 277, 512
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 4 cut(s) 107, 161, 445, 484
MhlI GDGCHC 2 cut(s) 249, 447
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 8 cut(s) 41, 44, 55, 166, 235, 249, 279, 405
MseI TTAA 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 211, 470
MspI CCGG 2 cut(s) 62, 299
MwoI GCNNNNNNNGC 2 cut(s) 208, 377
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 289, 536
NmuCI GTSAC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 9, 455
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 296, 359
PstNI CAGNNNCTG 2 cut(s) 230, 338
PvuI CGATCG 1 cut(s) 165
PvuII CAGCTG 2 cut(s) 211, 470
SaqAI TTAA 1 cut(s) 353
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 296, 359
SchI GAGTC 1 cut(s) 138
SduI GDGCHC 2 cut(s) 249, 447
SetI ASST 7 cut(s) 71, 79, 213, 229, 263, 472, 514
SfaNI GCATC 3 cut(s) 189, 358, 411
SinI GGWCC 2 cut(s) 296, 359
SsiI CCGC 1 cut(s) 371
SspI AATATT 1 cut(s) 24
TaaI ACNGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 347
TfiI GAWTC 2 cut(s) 9, 455
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseFI GTSAC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 512
VneI GTGCAC 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 296, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.