Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008671

Physical Location & Seq

Genomic Coordinates Forward (+)

62239643 .. 62241357

Gene Structure 1715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACGCTCCCCAGAGTTTCCTTCTTCTTCATCGTCGTCGTCGTCTCTGTTTCTCTCATTTGCAGGTGTGATGGAATTAGAGAAAAGGAGAAGACGGTAGCTATAATAAAGCCAGATGGGATGAGTGGTAACTACAGTGATAAGATAAAGAATGCTATTTTGGATTCTGGGTTTACAATTCTCAAGGAAATGACCATTCAGCTTGATGAGGATGCTGCAATGGGATTCTATGCCGAGCATGCTTCGAGGAGCTTCTTTTCTAGCCTAGTCAAGTACATGACAAGTGGACCAGTATTGATTATGGTTTTGGAGAAGGAAAATGCTGTTGCTGATTGGCGTGCTTTAATTGGCCCAACTGATGCGAGTGCAGCAAGGATTACTCATCCTCACAGCATCAGAGCAATGTGTGGGGTGACTATAGAAAAGAACTGTGTTCACGGGTCAGATTCTTTGCAATCAGCTCAACGAGAGATTGCATTCTTCTTTGAGGAGAAGTCTTCAGGTAGAGTAGTTACTGAGCATGATGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046939 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDK

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

5.73

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	30 - 165	1.2e-44	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17410 AT1G17410 AT1G17410
fragaria_vesca	FvH4_6g35060 FvH4_6g35060
malus_domestica	MD17G1165300.v1.1
prunus_persica	Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1
pyrus_communis	pycom17g15800
rosa_chinensis	RchiOBHm_Chr2g0146231
rosa_laevigata	RLG00000020188
rosa_multiflora	Rmu_sc0002054.1_g000020
rosa_roxburghii	Rroxscaffold_152G00434930 Rroxscaffold_2G00100220
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449900 Rh2BG462100 Rh2CG436800 Rh2DG471400
rosa_wichuraiana	Rw2G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	101, 202, 252, 461
AluI	AGCT	4 cut(s)	101, 202, 252, 461
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	215, 368
AspS9I	GGNCC	2 cut(s)	287, 350
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	98, 489
BbvI	GCAGC	2 cut(s)	202, 380
BccI	CCATC	2 cut(s)	65, 110
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	261, 266
BfmI	CTRYAG	2 cut(s)	133, 417
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	216, 369
BlsI	GCNGC	2 cut(s)	217, 370
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 350
BmsI	GCATC	3 cut(s)	202, 349, 402
BpiI	GAAGAC	2 cut(s)	98, 489
BpuEI	CTTGAG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	225, 408
BseGI	GGATG	3 cut(s)	126, 217, 382
BseMI	GCAATG	2 cut(s)	225, 408
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	262, 503
BseXI	GCAGC	2 cut(s)	202, 380
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmI	GAATGC	2 cut(s)	157, 476
BsnI	GGCC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	225, 408
BsrI	ACTGG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	97, 137, 431
BstC8I	GCNNGC	2 cut(s)	240, 339
BstDEI	CTNAG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	126, 217, 382
BstMAI	GTCTC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 368
BstNSI	RCATGY	1 cut(s)	242
BstSFI	CTRYAG	2 cut(s)	133, 417
BstV1I	GCAGC	2 cut(s)	202, 380
BstV2I	GAAGAC	2 cut(s)	98, 489
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	126, 217, 382
BtsIMutI	CAGTG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	240, 339
Cfr13I	GGNCC	2 cut(s)	287, 350
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	3 cut(s)	239, 277, 521
CviJI	RGCY	7 cut(s)	101, 112, 202, 252, 264, 351, 461
CviKI_1	RGCY	7 cut(s)	101, 112, 202, 252, 264, 351, 461
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	3 cut(s)	242, 280, 524
FaiI	YATR	7 cut(s)	104, 231, 240, 278, 302, 419, 522
FatI	CATG	3 cut(s)	238, 276, 520
Fnu4HI	GCNGC	2 cut(s)	216, 369
FokI	GGATG	3 cut(s)	133, 224, 369
Fsp4HI	GCNGC	2 cut(s)	216, 369
FspBI	CTAG	2 cut(s)	261, 266
GluI	GCNGC	2 cut(s)	216, 369
HaeIII	GGCC	1 cut(s)	351
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	242, 280, 524
HinfI	GANTC	3 cut(s)	164, 225, 446
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	174, 287, 436
Hpy188I	TCNGA	2 cut(s)	398, 445
Hpy8I	GTNNAC	3 cut(s)	174, 287, 436
Hpy99I	CGWCG	3 cut(s)	38, 41, 44
HpyAV	CCTTC	2 cut(s)	31, 307
HpyCH4III	ACNGT	3 cut(s)	97, 137, 431
HpyCH4V	TGCA	5 cut(s)	63, 218, 368, 454, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 368
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	242, 280, 524
LmnI	GCTCC	2 cut(s)	12, 249
LpnPI	CCDG	6 cut(s)	25, 49, 126, 153, 303, 486
Lsp1109I	GCAGC	2 cut(s)	202, 380
LweI	GCATC	3 cut(s)	202, 349, 402
MaeI	CTAG	2 cut(s)	261, 266
MaeIII	GTNAC	3 cut(s)	128, 412, 511
MboII	GAAGA	5 cut(s)	16, 19, 103, 472, 489
MluCI	AATT	4 cut(s)	75, 177, 345, 527
MnlI	CCTC	4 cut(s)	202, 240, 396, 481
MseI	TTAA	1 cut(s)	344
Mva1269I	GAATGC	2 cut(s)	157, 476
MwoI	GCNNNNNNNGC	2 cut(s)	239, 368
NlaIII	CATG	3 cut(s)	242, 280, 524
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PaqCI	CACCTGC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	2 cut(s)	157, 476
PfeI	GAWTC	3 cut(s)	164, 225, 446
PkrI	GCNGC	2 cut(s)	217, 370
PspPI	GGNCC	2 cut(s)	287, 350
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	2 cut(s)	216, 369
Sau96I	GGNCC	2 cut(s)	287, 350
SetI	ASST	6 cut(s)	68, 103, 204, 254, 463, 505
SfaNI	GCATC	3 cut(s)	202, 349, 402
SfcI	CTRYAG	2 cut(s)	133, 417
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	4 cut(s)	75, 177, 345, 527
SspMI	CTAG	2 cut(s)	261, 266
TaaI	ACNGT	3 cut(s)	97, 137, 431
TaqI	TCGA	1 cut(s)	245
TasI	AATT	4 cut(s)	75, 177, 345, 527
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	164, 225, 446
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	215, 368
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	2 cut(s)	261, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.