Rh2CG436800

Nucleoside diphosphate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008671
Physical Location & Seq
Forward (+)
59314911 .. 59317390
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG436800.1

Sequence Viewer

Length: 414 bp
ATGAGTGGTAACTACAGTGAAAAGATAAAGAATGCTATTTTGGATTCTGGGTTTACAATTCTCAAGGAAATGACCATTCAGCTTGATGAGGATGCTGCAATGGGATTCTACGCCGAGCATGCTTCGAGGAGCTTCTTTTCTAGCCTAGTCAAGTACATGACAAGTGGACCAGTATTGATTATGGTTTTGGAGAAGGAAAATGCTGTTGCTGATTGGCGTGCTTTAATTGGCCCAACTGATGCGAGTGCAGCAAAGATTACTCATCCTCACAGCATCAGAGCAATGTGTGGGGTGACTATAGAAAAGAACTGTGTTCACGGGTCAGATTCTTTGCAATCAGCTCGACAAGAGATTGCATTCTTCTTTGAGGAGAAGTCTTCAGGTAGAGTAGTTACTGAGCATGACGAATTGTAG

Protein Analysis

137

Amino Acids

15.1

Weight (kDa)

5.3

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDK PF00334 4 - 125 6.8e-38 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 82, 132, 341
AluI AGCT 3 cut(s) 82, 132, 341
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 95, 248
AspS9I GGNCC 2 cut(s) 167, 230
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 82, 260
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BfaI CTAG 2 cut(s) 141, 146
BfmI CTRYAG 2 cut(s) 13, 297
BisI GCNGC 2 cut(s) 96, 249
BlsI GCNGC 2 cut(s) 97, 250
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 167, 230
BmsI GCATC 3 cut(s) 82, 229, 282
BpiI GAAGAC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 2 cut(s) 105, 288
BseGI GGATG 2 cut(s) 97, 262
BseMI GCAATG 2 cut(s) 105, 288
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 142, 383
BseXI GCAGC 2 cut(s) 82, 260
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 231
BsmI GAATGC 2 cut(s) 37, 356
BsnI GGCC 1 cut(s) 231
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 105, 288
BsrI ACTGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 17, 311
BstC8I GCNNGC 2 cut(s) 120, 219
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 97, 262
BstMWI GCNNNNNNNGC 2 cut(s) 119, 248
BstNSI RCATGY 1 cut(s) 122
BstSFI CTRYAG 2 cut(s) 13, 297
BstV1I GCAGC 2 cut(s) 82, 260
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 97, 262
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 120, 219
Cfr13I GGNCC 2 cut(s) 167, 230
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 119, 157, 401
CviJI RGCY 5 cut(s) 82, 132, 144, 231, 341
CviKI_1 RGCY 5 cut(s) 82, 132, 144, 231, 341
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 363
FaeI CATG 3 cut(s) 122, 160, 404
FaiI YATR 5 cut(s) 120, 158, 182, 299, 402
FatI CATG 3 cut(s) 118, 156, 400
Fnu4HI GCNGC 2 cut(s) 96, 249
FokI GGATG 2 cut(s) 104, 249
Fsp4HI GCNGC 2 cut(s) 96, 249
FspBI CTAG 2 cut(s) 141, 146
GluI GCNGC 2 cut(s) 96, 249
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 3 cut(s) 122, 160, 404
HinfI GANTC 3 cut(s) 44, 105, 326
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 54, 167, 316
Hpy188I TCNGA 2 cut(s) 278, 325
Hpy8I GTNNAC 3 cut(s) 54, 167, 316
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 17, 311
HpyCH4V TGCA 4 cut(s) 98, 248, 334, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 248
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 3 cut(s) 122, 160, 404
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 3 cut(s) 33, 183, 366
Lsp1109I GCAGC 2 cut(s) 82, 260
LweI GCATC 3 cut(s) 82, 229, 282
MaeI CTAG 2 cut(s) 141, 146
MaeIII GTNAC 3 cut(s) 8, 292, 391
MboII GAAGA 2 cut(s) 352, 369
MluCI AATT 3 cut(s) 57, 225, 407
MnlI CCTC 4 cut(s) 82, 120, 276, 361
MseI TTAA 1 cut(s) 224
Mva1269I GAATGC 2 cut(s) 37, 356
MwoI GCNNNNNNNGC 2 cut(s) 119, 248
NlaIII CATG 3 cut(s) 122, 160, 404
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 122
PaeI GCATGC 1 cut(s) 122
PctI GAATGC 2 cut(s) 37, 356
PfeI GAWTC 3 cut(s) 44, 105, 326
PkrI GCNGC 2 cut(s) 97, 250
PspPI GGNCC 2 cut(s) 167, 230
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 96, 249
Sau96I GGNCC 2 cut(s) 167, 230
SetI ASST 4 cut(s) 84, 134, 343, 385
SfaNI GCATC 3 cut(s) 82, 229, 282
SfcI CTRYAG 2 cut(s) 13, 297
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SphI GCATGC 1 cut(s) 122
Sse9I AATT 3 cut(s) 57, 225, 407
SspMI CTAG 2 cut(s) 141, 146
TaaI ACNGT 2 cut(s) 17, 311
TaqI TCGA 2 cut(s) 125, 343
TasI AATT 3 cut(s) 57, 225, 407
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 3 cut(s) 44, 105, 326
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 95, 248
Tsp45I GTSAC 1 cut(s) 292
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 167
XceI RCATGY 1 cut(s) 122
XspI CTAG 2 cut(s) 141, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.