Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002054.1

Orthogroup ID

OG0008671

Physical Location & Seq

Genomic Coordinates Reverse (-)

124054 .. 125788

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002054.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgacgctccccagagtttccttcttcttcatcgtcgtcgtcgtcgtcgtctgtgtttctctcatttgcaggtgtgatggaattacagagaaggagaagacgttagctataataaagccagatgggatgagtggtaactacaatgaaaagataaagaatgctattttggattctgggtttacaattctcaaggaaatgaccattcagcttgatgaggatgctgcaatgggattctacgccgagcatgcttcgaggagcttcttttctagcctagtcaagtacatgacaagtggaccagtattgattttggttttggagaaggaaaatgctgttgctgattggcgtgcgttaattggcccaactgatgcgagtgcagcaaagattactcatcctcacagcatcagagcaatgtgtggggtgactatagaaaagaactgtgttcacgggtcagattctttgcaatcagctcgacaagagattgcattcttctttgaggagaagtcttcaggtagagtagttactgagcatgacgaattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046939 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDK

Protein Analysis

179

Amino Acids

19.74

Weight (kDa)

5.54

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17410 AT1G17410 AT1G17410
fragaria_vesca	FvH4_6g35060 FvH4_6g35060
malus_domestica	MD17G1165300.v1.1
prunus_persica	Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1
pyrus_communis	pycom17g15800
rosa_chinensis	RchiOBHm_Chr2g0146231
rosa_laevigata	RLG00000020188
rosa_multiflora	Rmu_sc0002054.1_g000020
rosa_roxburghii	Rroxscaffold_152G00434930 Rroxscaffold_2G00100220
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449900 Rh2BG462100 Rh2CG436800 Rh2DG471400
rosa_wichuraiana	Rw2G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	4 cut(s)	107, 208, 258, 467
AluI	AGCT	4 cut(s)	107, 208, 258, 467
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	221, 374
AspS9I	GGNCC	2 cut(s)	293, 356
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	104, 495
BbvI	GCAGC	2 cut(s)	208, 386
BccI	CCATC	2 cut(s)	71, 116
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BfaI	CTAG	2 cut(s)	267, 272
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	222, 375
BlsI	GCNGC	2 cut(s)	223, 376
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	293, 356
BmsI	GCATC	3 cut(s)	208, 355, 408
BpiI	GAAGAC	2 cut(s)	104, 495
BpuEI	CTTGAG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	2 cut(s)	231, 414
BseGI	GGATG	3 cut(s)	132, 223, 388
BseMI	GCAATG	2 cut(s)	231, 414
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	268, 509
BseXI	GCAGC	2 cut(s)	208, 386
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	357
BsmI	GAATGC	2 cut(s)	163, 482
BsnI	GGCC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	231, 414
BsrI	ACTGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	246, 345
BstDEI	CTNAG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	132, 223, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 374
BstNSI	RCATGY	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	208, 386
BstV2I	GAAGAC	2 cut(s)	104, 495
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	132, 223, 388
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	246, 345
Cfr13I	GGNCC	2 cut(s)	293, 356
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	245, 283, 527
CviJI	RGCY	7 cut(s)	107, 118, 208, 258, 270, 357, 467
CviKI_1	RGCY	7 cut(s)	107, 118, 208, 258, 270, 357, 467
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	489
FaeI	CATG	3 cut(s)	248, 286, 530
FaiI	YATR	5 cut(s)	110, 246, 284, 425, 528
FatI	CATG	3 cut(s)	244, 282, 526
Fnu4HI	GCNGC	2 cut(s)	222, 375
FokI	GGATG	3 cut(s)	139, 230, 375
Fsp4HI	GCNGC	2 cut(s)	222, 375
FspBI	CTAG	2 cut(s)	267, 272
GluI	GCNGC	2 cut(s)	222, 375
HaeIII	GGCC	1 cut(s)	357
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	248, 286, 530
HinfI	GANTC	3 cut(s)	170, 231, 452
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	180, 293, 442
Hpy188I	TCNGA	2 cut(s)	404, 451
Hpy8I	GTNNAC	3 cut(s)	180, 293, 442
Hpy99I	CGWCG	5 cut(s)	38, 41, 44, 47, 50
HpyAV	CCTTC	3 cut(s)	31, 85, 313
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	5 cut(s)	69, 224, 374, 460, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 374
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	3 cut(s)	248, 286, 530
LmnI	GCTCC	2 cut(s)	12, 255
LpnPI	CCDG	6 cut(s)	25, 55, 132, 159, 309, 492
Lsp1109I	GCAGC	2 cut(s)	208, 386
LweI	GCATC	3 cut(s)	208, 355, 408
MaeI	CTAG	2 cut(s)	267, 272
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	134, 418, 517
MboII	GAAGA	5 cut(s)	16, 19, 109, 478, 495
MluCI	AATT	4 cut(s)	81, 183, 351, 533
MnlI	CCTC	4 cut(s)	208, 246, 402, 487
MseI	TTAA	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	163, 482
MwoI	GCNNNNNNNGC	2 cut(s)	245, 374
NlaIII	CATG	3 cut(s)	248, 286, 530
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PaqCI	CACCTGC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 42, 45
PctI	GAATGC	2 cut(s)	163, 482
PfeI	GAWTC	3 cut(s)	170, 231, 452
PkrI	GCNGC	2 cut(s)	223, 376
PspPI	GGNCC	2 cut(s)	293, 356
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	222, 375
Sau96I	GGNCC	2 cut(s)	293, 356
SetI	ASST	7 cut(s)	74, 104, 109, 210, 260, 469, 511
SfaNI	GCATC	3 cut(s)	208, 355, 408
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	4 cut(s)	81, 183, 351, 533
SspMI	CTAG	2 cut(s)	267, 272
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	251, 469
TasI	AATT	4 cut(s)	81, 183, 351, 533
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	170, 231, 452
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	221, 374
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	19, 159
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	1 cut(s)	248
XspI	CTAG	2 cut(s)	267, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.