Rroxscaffold_152G00434930

Nucleoside diphosphate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000152
OG0008671
Physical Location & Seq
Forward (+)
473650 .. 475726
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_152G00434930.1

Sequence Viewer

Length: 489 bp
ATGACGCTCCCCAGAGTTTGCTTCTTCGTCATCGTCGTCATCGTCTCTGTTTCTCTCATTTGCAGGTGTGCTGGAATTACAGAGAAGGAGAAGACATTAGCTATAATAAAGCCAGATGGGATGAGTGGTAACTACAGTGATAAGATAAAGAACGCTATTTTGGATTCTGGGTTTACAATTCTCAAGGAAATGACCATTCAGCTTGATGAGGATGCTGCAATGGGATTCTATGCCGAGCATGCTTCGAGGAGCTTCTTTTCTAGCCTAGTCAACTACATGACAAGTGGACCAGTATTGATTATGGTTTTGGAGAAGGAAAATGCTGTTGCTGATTGGCGTGCTTTAATTGGCCCAACTGATGCGAGTGCAGCAAAGATTACCCATCCTCACAGCATCAGAGCAATGTGTGGGGTGACTATAGAAAAGAACTGTGTTCACGGGTCAGATTCTTTGCAATCAGCTCAACGAGAGATTGCATTCTTCTTTTGA

Protein Analysis

162

Amino Acids

17.73

Weight (kDa)

6.06

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDK PF00334 30 - 162 7.2e-44 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 54
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 4 cut(s) 101, 202, 252, 461
AluI AGCT 4 cut(s) 101, 202, 252, 461
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 215, 368
AspS9I GGNCC 2 cut(s) 287, 350
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 202, 380
BccI CCATC 2 cut(s) 110, 390
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 261, 266
BfmI CTRYAG 2 cut(s) 133, 417
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 216, 369
BlsI GCNGC 2 cut(s) 217, 370
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 287, 350
BmsI GCATC 3 cut(s) 202, 349, 402
BpiI GAAGAC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 2 cut(s) 225, 408
BseGI GGATG 3 cut(s) 126, 217, 382
BseMI GCAATG 2 cut(s) 225, 408
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 202, 380
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 1 cut(s) 351
BspANI GGCC 1 cut(s) 351
BspMI ACCTGC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 225, 408
BsrI ACTGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 137, 431
BstC8I GCNNGC 2 cut(s) 240, 339
BstF5I GGATG 3 cut(s) 126, 217, 382
BstMAI GTCTC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 239, 368
BstNSI RCATGY 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 133, 417
BstV1I GCAGC 2 cut(s) 202, 380
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 126, 217, 382
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 240, 339
Cfr13I GGNCC 2 cut(s) 287, 350
CseI GACGC 1 cut(s) 13
CviAII CATG 2 cut(s) 239, 277
CviJI RGCY 7 cut(s) 101, 112, 202, 252, 264, 351, 461
CviKI_1 RGCY 7 cut(s) 101, 112, 202, 252, 264, 351, 461
Eco47I GGWCC 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 2 cut(s) 242, 280
FaiI YATR 6 cut(s) 104, 231, 240, 278, 302, 419
FatI CATG 2 cut(s) 238, 276
Fnu4HI GCNGC 2 cut(s) 216, 369
FokI GGATG 3 cut(s) 133, 224, 369
Fsp4HI GCNGC 2 cut(s) 216, 369
FspBI CTAG 2 cut(s) 261, 266
GluI GCNGC 2 cut(s) 216, 369
HaeIII GGCC 1 cut(s) 351
HgaI GACGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 242, 280
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 3 cut(s) 164, 225, 446
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 4 cut(s) 174, 271, 287, 436
Hpy188I TCNGA 2 cut(s) 398, 445
Hpy8I GTNNAC 4 cut(s) 174, 271, 287, 436
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 79, 307
HpyCH4III ACNGT 2 cut(s) 137, 431
HpyCH4V TGCA 5 cut(s) 63, 218, 368, 454, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 368
Hsp92II CATG 2 cut(s) 242, 280
LmnI GCTCC 2 cut(s) 12, 249
LpnPI CCDG 6 cut(s) 25, 49, 57, 126, 153, 303
Lsp1109I GCAGC 2 cut(s) 202, 380
LweI GCATC 3 cut(s) 202, 349, 402
MaeI CTAG 2 cut(s) 261, 266
MaeIII GTNAC 2 cut(s) 128, 412
MboII GAAGA 3 cut(s) 16, 103, 472
MluCI AATT 3 cut(s) 75, 177, 345
MnlI CCTC 3 cut(s) 202, 240, 396
MseI TTAA 1 cut(s) 344
Mva1269I GAATGC 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 239, 368
NlaIII CATG 2 cut(s) 242, 280
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 242
PaeI GCATGC 1 cut(s) 242
PaqCI CACCTGC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 39
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 3 cut(s) 164, 225, 446
PkrI GCNGC 2 cut(s) 217, 370
PspPI GGNCC 2 cut(s) 287, 350
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 2 cut(s) 216, 369
Sau96I GGNCC 2 cut(s) 287, 350
SetI ASST 5 cut(s) 68, 103, 204, 254, 463
SfaNI GCATC 3 cut(s) 202, 349, 402
SfcI CTRYAG 2 cut(s) 133, 417
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 242
Sse9I AATT 3 cut(s) 75, 177, 345
SspMI CTAG 2 cut(s) 261, 266
TaaI ACNGT 2 cut(s) 137, 431
TaqI TCGA 1 cut(s) 245
TasI AATT 3 cut(s) 75, 177, 345
TfiI GAWTC 3 cut(s) 164, 225, 446
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 215, 368
Tsp45I GTSAC 1 cut(s) 412
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 261, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.