Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008671

Physical Location & Seq

Genomic Coordinates Forward (+)

27715355 .. 27718913

Gene Structure 3559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACGCTCCCCAGAGTTTTCTTCTTCTTCATCGTCCTTGTCGTATCTGTTTCTTTCATTTGCAGGTGTGATGGAGTTACAGAGAAGGAGAAGACATTAGCTATAATAAAGCCTGATGGGTTGAGTGGTAACTATAGTGATAAGATAAAGAATGCTGTTTTGGACTCTGGGTTTACAATTCTGAAGGAAATGATCATTCAGCTTGATGAGGATGCTGCAATGGGATTCTATGCCGAGCATTCTTCAAGGAGCTTCTTCTCTAGCCTAGTCAAGTACATGACAAGTGGACCAGTATTGGTTATGGTTTTGGTGAAGGAAAATGCTGTTGCTGATTGGCGTGCTTTAATTGGCCCAACTGATGCAAATGCAGCAAAGATCACTCATCCTCACAGCATCAGGGCAATGTGTGGGGTGACTTTAGAGAAGAATTGTGTTCACGGGTCAGATTCTCTGCAATCAGCTCAACGAGAGATTGCATTCTTCTTTGAGGAGAAGTCTTCAGGTAGAGTAGTTACTGAACATGACGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046939 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDK

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

5.72

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	30 - 180	5.4e-38	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17410 AT1G17410 AT1G17410
fragaria_vesca	FvH4_6g35060 FvH4_6g35060
malus_domestica	MD17G1165300.v1.1
prunus_persica	Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1
pyrus_communis	pycom17g15800
rosa_chinensis	RchiOBHm_Chr2g0146231
rosa_laevigata	RLG00000020188
rosa_multiflora	Rmu_sc0002054.1_g000020
rosa_roxburghii	Rroxscaffold_152G00434930 Rroxscaffold_2G00100220
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449900 Rh2BG462100 Rh2CG436800 Rh2DG471400
rosa_wichuraiana	Rw2G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	203, 483
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	101, 202, 252, 461
AluI	AGCT	4 cut(s)	101, 202, 252, 461
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	215, 368
AspS9I	GGNCC	2 cut(s)	287, 350
AsuHPI	GGTGA	2 cut(s)	322, 424
AvaII	GGWCC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	98, 489
BbvI	GCAGC	2 cut(s)	202, 380
BccI	CCATC	2 cut(s)	65, 110
BclI	TGATCA	1 cut(s)	192
BfaI	CTAG	2 cut(s)	261, 266
BfmI	CTRYAG	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	216, 369
BlsI	GCNGC	2 cut(s)	217, 370
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 350
BmsI	GCATC	3 cut(s)	202, 349, 402
BpiI	GAAGAC	2 cut(s)	98, 489
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	225, 408
BseGI	GGATG	2 cut(s)	217, 382
BseMI	GCAATG	2 cut(s)	225, 408
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	202, 380
BshFI	GGCC	1 cut(s)	351
BsmI	GAATGC	3 cut(s)	157, 238, 476
BsnI	GGCC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	192, 375
BspANI	GGCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	225, 408
BsrI	ACTGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	192, 375
BstC8I	GCNNGC	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	217, 382
BstKTI	GATC	2 cut(s)	195, 378
BstMBI	GATC	2 cut(s)	192, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	202, 380
BstV2I	GAAGAC	2 cut(s)	98, 489
BsuRI	GGCC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	217, 382
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	287, 350
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	277, 521
CviJI	RGCY	7 cut(s)	101, 112, 202, 252, 264, 351, 461
CviKI_1	RGCY	7 cut(s)	101, 112, 202, 252, 264, 351, 461
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	2 cut(s)	194, 377
DpnII	GATC	2 cut(s)	192, 375
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	203, 483
FaeI	CATG	2 cut(s)	280, 524
FaiI	YATR	6 cut(s)	104, 135, 231, 278, 302, 522
FatI	CATG	2 cut(s)	276, 520
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	216, 369
FokI	GGATG	2 cut(s)	224, 369
Fsp4HI	GCNGC	2 cut(s)	216, 369
FspBI	CTAG	2 cut(s)	261, 266
GluI	GCNGC	2 cut(s)	216, 369
HaeIII	GGCC	1 cut(s)	351
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	280, 524
HinfI	GANTC	3 cut(s)	164, 225, 446
HphI	GGTGA	2 cut(s)	322, 424
Hpy166II	GTNNAC	3 cut(s)	174, 287, 436
Hpy188I	TCNGA	2 cut(s)	183, 445
Hpy8I	GTNNAC	3 cut(s)	174, 287, 436
HpyAV	CCTTC	3 cut(s)	79, 178, 307
HpyCH4V	TGCA	6 cut(s)	63, 218, 362, 368, 454, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
Hsp92II	CATG	2 cut(s)	280, 524
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	192, 375
LmnI	GCTCC	2 cut(s)	12, 249
LpnPI	CCDG	7 cut(s)	25, 49, 126, 153, 303, 382, 486
Lsp1109I	GCAGC	2 cut(s)	202, 380
LweI	GCATC	3 cut(s)	202, 349, 402
MaeI	CTAG	2 cut(s)	261, 266
MaeIII	GTNAC	4 cut(s)	76, 128, 412, 511
MalI	GATC	2 cut(s)	194, 377
MboI	GATC	2 cut(s)	192, 375
MboII	GAAGA	9 cut(s)	13, 16, 19, 103, 234, 247, 436, 472, 489
MluCI	AATT	4 cut(s)	177, 345, 427, 527
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	202, 396, 481
MseI	TTAA	1 cut(s)	344
Mva1269I	GAATGC	3 cut(s)	157, 238, 476
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	2 cut(s)	192, 375
NlaIII	CATG	2 cut(s)	280, 524
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	412
PaqCI	CACCTGC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	3 cut(s)	157, 238, 476
PfeI	GAWTC	2 cut(s)	225, 446
PkrI	GCNGC	2 cut(s)	217, 370
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	287, 350
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	2 cut(s)	216, 369
Sau3AI	GATC	2 cut(s)	192, 375
Sau96I	GGNCC	2 cut(s)	287, 350
SchI	GAGTC	1 cut(s)	158
SetI	ASST	6 cut(s)	68, 103, 204, 254, 463, 505
SfaNI	GCATC	3 cut(s)	202, 349, 402
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	4 cut(s)	177, 345, 427, 527
SspMI	CTAG	2 cut(s)	261, 266
TasI	AATT	4 cut(s)	177, 345, 427, 527
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	225, 446
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	215, 368
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	19, 46
VpaK11BI	GGWCC	1 cut(s)	287
XspI	CTAG	2 cut(s)	261, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.