Rw2G036720

Nucleoside diphosphate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008671
Physical Location & Seq
Forward (+)
60486722 .. 60488445
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036720.1

Sequence Viewer

Length: 531 bp
ATGACGCTCCCCAGAGTTTCCTTCTTCTTCATCGTCGTCGTCTCTGTTTCTCTCATTTGCAGGTGTGATGGAATTACAGAGAAGGAGAAGACGTTAGCTATAATAAAGCCAGATGGGATGAGTGGTAACTACAGTGAAAAGATAAAGAATGCTATTTTGGATTCTGGGTTTACAATTCTCAAGGAAATGACCATTCAGCTTGATGAGGATGCTGCAATGGGATTCTACGCCGAGCATGCTTCGAGGAGCTTCTTTTCTAGCCTAGTCAAGTACATGACAAGTGGACCAGTATTGATTTTGGTTTTGGAGAAGGAAAATGCTGTTGCTGATTGGCGTGCTTTAATTGGTCCAACTGATGCGAGTGCAGCAAAGATTACTCATCCTCACAGCATCAGAGCAATGTGTGGGGTGACTATAGAAAAGAACTGTGTTCACGGGTCAGATTCTTTGCAATCAGCTCGACAAGAGATTGCATTCTTCTTTGAGGAGAAGTCTTCAGGTAGAGTAGTTACTGAGCATGACGAATTGTAG

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

5.54

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDK PF00334 29 - 164 1e-43 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 98, 199, 249, 458
AluI AGCT 4 cut(s) 98, 199, 249, 458
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 212, 365
AspS9I GGNCC 2 cut(s) 284, 347
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 284, 347
BbsI GAAGAC 2 cut(s) 95, 486
BbvI GCAGC 2 cut(s) 199, 377
BccI CCATC 2 cut(s) 62, 107
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 2 cut(s) 258, 263
BfmI CTRYAG 2 cut(s) 130, 414
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 2 cut(s) 213, 366
BlsI GCNGC 2 cut(s) 214, 367
Bme18I GGWCC 2 cut(s) 284, 347
BmgT120I GGNCC 2 cut(s) 284, 347
BmsI GCATC 3 cut(s) 199, 346, 399
BpiI GAAGAC 2 cut(s) 95, 486
BpuEI CTTGAG 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 2 cut(s) 222, 405
BseGI GGATG 3 cut(s) 123, 214, 379
BseMI GCAATG 2 cut(s) 222, 405
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 2 cut(s) 259, 500
BseXI GCAGC 2 cut(s) 199, 377
BsgI GTGCAG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmI GAATGC 2 cut(s) 154, 473
BspCNI CTCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 51
BsrDI GCAATG 2 cut(s) 222, 405
BsrI ACTGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 134, 428
BstC8I GCNNGC 2 cut(s) 237, 336
BstDEI CTNAG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 123, 214, 379
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 236, 365
BstNSI RCATGY 1 cut(s) 239
BstSFI CTRYAG 2 cut(s) 130, 414
BstV1I GCAGC 2 cut(s) 199, 377
BstV2I GAAGAC 2 cut(s) 95, 486
BtsCI GGATG 3 cut(s) 123, 214, 379
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 237, 336
Cfr13I GGNCC 2 cut(s) 284, 347
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 236, 274, 518
CviJI RGCY 6 cut(s) 98, 109, 199, 249, 261, 458
CviKI_1 RGCY 6 cut(s) 98, 109, 199, 249, 261, 458
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 284, 347
Eco57I CTGAAG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 3 cut(s) 239, 277, 521
FaiI YATR 5 cut(s) 101, 237, 275, 416, 519
FatI CATG 3 cut(s) 235, 273, 517
Fnu4HI GCNGC 2 cut(s) 213, 366
FokI GGATG 3 cut(s) 130, 221, 366
Fsp4HI GCNGC 2 cut(s) 213, 366
FspBI CTAG 2 cut(s) 258, 263
GluI GCNGC 2 cut(s) 213, 366
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 239, 277, 521
HinfI GANTC 3 cut(s) 161, 222, 443
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 171, 284, 433
Hpy188I TCNGA 2 cut(s) 395, 442
Hpy8I GTNNAC 3 cut(s) 171, 284, 433
Hpy99I CGWCG 2 cut(s) 38, 41
HpyAV CCTTC 3 cut(s) 31, 76, 304
HpyCH4III ACNGT 2 cut(s) 134, 428
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 60, 215, 365, 451, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 365
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 3 cut(s) 239, 277, 521
LmnI GCTCC 2 cut(s) 12, 246
LpnPI CCDG 6 cut(s) 25, 46, 123, 150, 300, 483
Lsp1109I GCAGC 2 cut(s) 199, 377
LweI GCATC 3 cut(s) 199, 346, 399
MaeI CTAG 2 cut(s) 258, 263
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 3 cut(s) 125, 409, 508
MboII GAAGA 5 cut(s) 16, 19, 100, 469, 486
MluCI AATT 4 cut(s) 72, 174, 342, 524
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 199, 237, 393, 478
MseI TTAA 1 cut(s) 341
Mva1269I GAATGC 2 cut(s) 154, 473
MwoI GCNNNNNNNGC 2 cut(s) 236, 365
NlaIII CATG 3 cut(s) 239, 277, 521
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PaqCI CACCTGC 1 cut(s) 51
PctI GAATGC 2 cut(s) 154, 473
PfeI GAWTC 3 cut(s) 161, 222, 443
PkrI GCNGC 2 cut(s) 214, 367
PspPI GGNCC 2 cut(s) 284, 347
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 213, 366
Sau96I GGNCC 2 cut(s) 284, 347
SetI ASST 7 cut(s) 65, 95, 100, 201, 251, 460, 502
SfaNI GCATC 3 cut(s) 199, 346, 399
SfcI CTRYAG 2 cut(s) 130, 414
SinI GGWCC 2 cut(s) 284, 347
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 239
Sse9I AATT 4 cut(s) 72, 174, 342, 524
SspMI CTAG 2 cut(s) 258, 263
TaaI ACNGT 2 cut(s) 134, 428
TaiI ACGT 1 cut(s) 95
TaqI TCGA 2 cut(s) 242, 460
TasI AATT 4 cut(s) 72, 174, 342, 524
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 3 cut(s) 161, 222, 443
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 212, 365
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 284, 347
XceI RCATGY 1 cut(s) 239
XspI CTAG 2 cut(s) 258, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.