Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008671

Physical Location & Seq

Genomic Coordinates Reverse (-)

16407716 .. 16410692

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1165300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTCCCCAGAGTGGTTTCGATCGTCTCTAACTTTCTCTTGATCGGCTTTGTGGTCTCTCTGTCTCTCCCTTGCAGGTCTGATGCAACTGCAGAGAAGGAGATGACATTAGCAATAATAAAGCCAGATGGGTTGTATGATAACTACACTGATAAGATAAAGAATGCTATTTCGGATTCTGGGTTTAGAATCCTCAACGAAAGGCTCGTCCAACTCGACGAGGACGCTGCAATGAGCTTCTATGCCGAGCATTCTTCGAGGAGCTTCTTTTCTGACCTAGTCAGGTACATGACAAGTGGACCAGTATTGATTATGGTTTTGGAGAAGGAAAACGCTGTTGCAGATTGGCGCACTTTAATTGGCCCAACTGATGCAAGTAAAGCAAAGATTACTCATCCCAACAGCATAAGAGCAATGTGCGGGAAGGATTTACAAAGAAACTGTGTTCATGGGTCGGATTCTCTTCAATCAGCTCAACGAGAGATCTCATTTTTCTTCAAAGAAAAGTCTCCAGGCAGCGGAAGCATGGGGCATGACGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046939 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDK

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

5.8

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDK	PF00334	34 - 169	9.4e-47	Nucleoside diphosphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17410 AT1G17410 AT1G17410
fragaria_vesca	FvH4_6g35060 FvH4_6g35060
malus_domestica	MD17G1165300.v1.1
prunus_persica	Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1
pyrus_communis	pycom17g15800
rosa_chinensis	RchiOBHm_Chr2g0146231
rosa_laevigata	RLG00000020188
rosa_multiflora	Rmu_sc0002054.1_g000020
rosa_roxburghii	Rroxscaffold_152G00434930 Rroxscaffold_2G00100220
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449900 Rh2BG462100 Rh2CG436800 Rh2DG471400
rosa_wichuraiana	Rw2G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AciI	CCGC	2 cut(s)	420, 519
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	13, 518
AgsI	TTSAA	2 cut(s)	467, 499
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	3 cut(s)	237, 264, 473
AluI	AGCT	3 cut(s)	237, 264, 473
Alw26I	GTCTC	4 cut(s)	31, 61, 69, 513
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	227, 516
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	299, 362
AvaII	GGWCC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	214, 528
BccI	CCATC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	4 cut(s)	31, 61, 69, 513
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	2 cut(s)	228, 517
BlsI	GCNGC	2 cut(s)	229, 518
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	299, 362
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	73, 361
BpmI	CTGGAG	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 518
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	2 cut(s)	237, 420
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	13, 518
BseMI	GCAATG	2 cut(s)	237, 420
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	214, 528
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	13, 518
BsmAI	GTCTC	4 cut(s)	31, 61, 69, 513
BsmBI	CGTCTC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	169, 250
BsnI	GGCC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	21, 42, 483
BspACI	CCGC	2 cut(s)	420, 519
BspANI	GGCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	94
BspMI	ACCTGC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	237, 420
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	21, 42, 483
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	3 cut(s)	24, 45, 486
BstMAI	GTCTC	4 cut(s)	31, 61, 69, 513
BstMBI	GATC	3 cut(s)	21, 42, 483
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 522
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	214, 528
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	299, 362
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	289, 449, 526, 533
CviJI	RGCY	7 cut(s)	48, 124, 205, 237, 264, 363, 473
CviKI_1	RGCY	7 cut(s)	48, 124, 205, 237, 264, 363, 473
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	3 cut(s)	23, 44, 485
DpnII	GATC	3 cut(s)	21, 42, 483
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	292, 452, 529, 536
FaiI	YATR	8 cut(s)	138, 243, 290, 314, 407, 450, 527, 534
FatI	CATG	4 cut(s)	288, 448, 525, 532
FauI	CCCGC	1 cut(s)	413
Fnu4HI	GCNGC	2 cut(s)	228, 517
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	228, 517
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	228, 517
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	363
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	292, 452, 529, 536
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	176, 189, 458
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	82, 175, 274, 457
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	91, 319, 418
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	6 cut(s)	75, 86, 92, 230, 341, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 522
Hsp92II	CATG	4 cut(s)	292, 452, 529, 536
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	21, 42, 483
LmnI	GCTCC	2 cut(s)	9, 261
LpnPI	CCDG	8 cut(s)	22, 61, 138, 165, 268, 315, 498, 525
Lsp1109I	GCAGC	2 cut(s)	214, 528
LweI	GCATC	2 cut(s)	73, 361
MaeI	CTAG	1 cut(s)	278
MalI	GATC	3 cut(s)	23, 44, 485
MboI	GATC	3 cut(s)	21, 42, 483
MboII	GAAGA	3 cut(s)	246, 455, 487
MflI	RGATCY	1 cut(s)	483
MluCI	AATT	2 cut(s)	357, 539
MmeI	TCCRAC	2 cut(s)	235, 435
MnlI	CCTC	3 cut(s)	203, 214, 252
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	169, 250
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	2 cut(s)	380, 522
NdeII	GATC	3 cut(s)	21, 42, 483
NlaIII	CATG	4 cut(s)	292, 452, 529, 536
NmeAIII	GCCGAG	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 213
PctI	GAATGC	2 cut(s)	169, 250
PfeI	GAWTC	3 cut(s)	176, 189, 458
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	229, 518
Ple19I	CGATCG	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	299, 362
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	228, 517
Sau3AI	GATC	3 cut(s)	21, 42, 483
Sau96I	GGNCC	2 cut(s)	299, 362
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	6 cut(s)	80, 239, 266, 279, 287, 475
SfaNI	GCATC	2 cut(s)	73, 361
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	299
Sse9I	AATT	2 cut(s)	357, 539
SsiI	CCGC	2 cut(s)	420, 519
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	20, 216, 257
TasI	AATT	2 cut(s)	357, 539
TfiI	GAWTC	3 cut(s)	176, 189, 458
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	227, 516
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	299
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.