Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008671

Physical Location & Seq

Genomic Coordinates Reverse (-)

2766896 .. 2769640

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G038400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTCCCCAGAGTTCCGTTCCTCTCCAACTTTCTCTTCGTCGTCGTCCTTGTGGTCTCTCTGTCTTTCCCTTGCAGGTCTGACGGGTTTGCAGAGAAGGAAAAAACATTAGCAATAATAAAGCCAGATGGGTTGTATGATAACTGCACTGATAAAATAAAGAATGCTATCTTTGATTCGGGTTTTAGAATCGTCAAGGAAATGCTCATTCAACTTGATGAGGAGGCTGCAATGAGCTTCTATGCCGAACATTCTTCGAGGAGCTTCTTTTCTAGCCTAGTCAAGTACATGACAAGTGGACCAGTATTGATTATGGTTTTGGAGAAGGAAAACGCTGTTGCAGATTGGCGTGCTTTAATTGGCCCAACTGATGCGAGCAAAGCAAAGATTACTCATCCTAACAGCATCAGAGCCATGTGTGGGCTGGATATACAGAAGAATTGTGTTCATGGGTCAGATTCTCCTCAATCGGCTCAACGAGAGATCTCATTTTTCTTTAAAGAAAAGTCTTCAGGCAGCGCAGTTACAGAACATGACGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004550 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006165 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009132 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019205 GO:0019637 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046483 GO:0046939 GO:0055086 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NDK

Protein Analysis

182

Amino Acids

20.13

Weight (kDa)

5.81

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17410 AT1G17410 AT1G17410
fragaria_vesca	FvH4_6g35060 FvH4_6g35060
malus_domestica	MD17G1165300.v1.1
prunus_persica	Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1 Prupe.3G038400_v2.0.a1
pyrus_communis	pycom17g15800
rosa_chinensis	RchiOBHm_Chr2g0146231
rosa_laevigata	RLG00000020188
rosa_multiflora	Rmu_sc0002054.1_g000020
rosa_roxburghii	Rroxscaffold_152G00434930 Rroxscaffold_2G00100220
rosa_rugosa	Rorug02G0393800
rosa_samantha	Rh2AG449900 Rh2BG462100 Rh2CG436800 Rh2DG471400
rosa_wichuraiana	Rw2G036720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	237, 264
AluI	AGCT	2 cut(s)	237, 264
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	227, 516
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	299, 362
AvaII	GGWCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	214, 528
BccI	CCATC	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	273, 278
BfuAI	ACCTGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	2 cut(s)	228, 517
BlsI	GCNGC	2 cut(s)	229, 518
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	299, 362
BmsI	GCATC	2 cut(s)	361, 414
BpiI	GAAGAC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	236, 274, 453
BseXI	GCAGC	2 cut(s)	214, 528
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	483
BspANI	GGCC	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	483
Bst6I	CTCTTC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	351, 376
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	214, 528
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	351, 376
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	299, 362
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	289, 415, 449, 533
CviJI	RGCY	9 cut(s)	124, 227, 237, 264, 276, 363, 413, 424, 473
CviKI_1	RGCY	9 cut(s)	124, 227, 237, 264, 276, 363, 413, 424, 473
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	495
FaeI	CATG	4 cut(s)	292, 418, 452, 536
FaiI	YATR	8 cut(s)	138, 243, 290, 314, 416, 431, 450, 534
FatI	CATG	4 cut(s)	288, 414, 448, 532
Fnu4HI	GCNGC	2 cut(s)	228, 517
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	228, 517
FspBI	CTAG	2 cut(s)	273, 278
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	2 cut(s)	228, 517
HaeIII	GGCC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	292, 418, 452, 536
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	176, 189, 458
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	82, 410, 457
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	2 cut(s)	91, 319
HpyCH4V	TGCA	5 cut(s)	75, 92, 147, 230, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	292, 418, 452, 536
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	9, 261
LpnPI	CCDG	6 cut(s)	22, 61, 138, 315, 410, 498
Lsp1109I	GCAGC	2 cut(s)	214, 528
LweI	GCATC	2 cut(s)	361, 414
MaeI	CTAG	2 cut(s)	273, 278
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	4 cut(s)	28, 246, 448, 501
MflI	RGATCY	1 cut(s)	483
MluCI	AATT	3 cut(s)	357, 439, 539
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	5 cut(s)	32, 214, 217, 252, 474
MseI	TTAA	2 cut(s)	356, 498
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	292, 418, 452, 536
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	3 cut(s)	176, 189, 458
PkrI	GCNGC	2 cut(s)	229, 518
PspPI	GGNCC	2 cut(s)	299, 362
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	356, 498
SatI	GCNGC	2 cut(s)	228, 517
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	2 cut(s)	299, 362
SetI	ASST	3 cut(s)	80, 239, 266
SfaNI	GCATC	2 cut(s)	361, 414
SinI	GGWCC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	357, 439, 539
SspMI	CTAG	2 cut(s)	273, 278
TaqI	TCGA	1 cut(s)	257
TasI	AATT	3 cut(s)	357, 439, 539
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	176, 189, 458
Tru1I	TTAA	2 cut(s)	356, 498
Tru9I	TTAA	2 cut(s)	356, 498
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	227, 516
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XspI	CTAG	2 cut(s)	273, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.