Rh2DG471400

Nucleoside diphosphate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008671
Physical Location & Seq
Forward (+)
68304047 .. 68305446
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG471400.1

Sequence Viewer

Length: 495 bp
ATGTTTGGGGAAATGTATATATATAGGTGTGATGGAATTACAGAGAAGGAGAAGACGTTAGCTATAATAAAGCCAGATGGGATGAGTGGTAACTACAGTGAAAAGATAAAGAATGCTATTTTGGATTCTGGGTTTACAATTCTCAAGGAAATGACCATTCAGGTTGATGAGGATGCTGCAATGGGATTCTACGCCGAGCATGCTTCGAGGAGCTTCTTTTCTAGCCTAGTCAAGTACATGACAAGTGGACCAGTATTGATTTTGGTTTTGGAGAAGGAAAATGCTGTTGCTGATTGGCGTGCTTTAATTGGCCCAACTGATGCGAGTGCAGCAAAGATTACTCATCCTCACAGCATCAGAGCAATGTGTGGGGTGACTATAGAAAAGAACTGTGTTCACGGGTCAGATTCTTTGCAATCAGCTCGACAAGAGATTGCATTCTTCTTTGAGGAGAAGTCTTCAGGTAGAGTAGTTACTGAGCATGACGAATTGTAG

Protein Analysis

164

Amino Acids

18.18

Weight (kDa)

5.22

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDK PF00334 17 - 152 1e-43 Nucleoside diphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 3 cut(s) 62, 213, 422
AluI AGCT 3 cut(s) 62, 213, 422
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 176, 329
AspS9I GGNCC 2 cut(s) 248, 311
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 59, 450
BbvI GCAGC 2 cut(s) 163, 341
BccI CCATC 2 cut(s) 26, 71
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BfaI CTAG 2 cut(s) 222, 227
BfmI CTRYAG 2 cut(s) 94, 378
BisI GCNGC 2 cut(s) 177, 330
BlsI GCNGC 2 cut(s) 178, 331
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 248, 311
BmsI GCATC 3 cut(s) 163, 310, 363
BpiI GAAGAC 2 cut(s) 59, 450
BpuEI CTTGAG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 186, 369
BseGI GGATG 3 cut(s) 87, 178, 343
BseMI GCAATG 2 cut(s) 186, 369
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 223, 464
BseXI GCAGC 2 cut(s) 163, 341
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 118, 437
BsnI GGCC 1 cut(s) 312
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 186, 369
BsrI ACTGG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 98, 392
BstC8I GCNNGC 2 cut(s) 201, 300
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 87, 178, 343
BstMWI GCNNNNNNNGC 2 cut(s) 200, 329
BstNSI RCATGY 1 cut(s) 203
BstSFI CTRYAG 2 cut(s) 94, 378
BstV1I GCAGC 2 cut(s) 163, 341
BstV2I GAAGAC 2 cut(s) 59, 450
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 3 cut(s) 87, 178, 343
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 201, 300
Cfr13I GGNCC 2 cut(s) 248, 311
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 200, 238, 482
CviJI RGCY 6 cut(s) 62, 73, 213, 225, 312, 422
CviKI_1 RGCY 6 cut(s) 62, 73, 213, 225, 312, 422
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 444
FaeI CATG 3 cut(s) 203, 241, 485
FaiI YATR 9 cut(s) 18, 20, 22, 24, 65, 201, 239, 380, 483
FatI CATG 3 cut(s) 199, 237, 481
Fnu4HI GCNGC 2 cut(s) 177, 330
FokI GGATG 3 cut(s) 94, 185, 330
Fsp4HI GCNGC 2 cut(s) 177, 330
FspBI CTAG 2 cut(s) 222, 227
GluI GCNGC 2 cut(s) 177, 330
HaeIII GGCC 1 cut(s) 312
Hin1II CATG 3 cut(s) 203, 241, 485
HinfI GANTC 3 cut(s) 125, 186, 407
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 3 cut(s) 135, 248, 397
Hpy188I TCNGA 2 cut(s) 359, 406
Hpy8I GTNNAC 3 cut(s) 135, 248, 397
HpyAV CCTTC 2 cut(s) 40, 268
HpyCH4III ACNGT 2 cut(s) 98, 392
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 179, 329, 415, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 329
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 3 cut(s) 203, 241, 485
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 5 cut(s) 87, 114, 146, 264, 447
Lsp1109I GCAGC 2 cut(s) 163, 341
LweI GCATC 3 cut(s) 163, 310, 363
MaeI CTAG 2 cut(s) 222, 227
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 3 cut(s) 89, 373, 472
MboII GAAGA 3 cut(s) 64, 433, 450
MluCI AATT 4 cut(s) 36, 138, 306, 488
MnlI CCTC 4 cut(s) 163, 201, 357, 442
MseI TTAA 1 cut(s) 305
Mva1269I GAATGC 2 cut(s) 118, 437
MwoI GCNNNNNNNGC 2 cut(s) 200, 329
NlaIII CATG 3 cut(s) 203, 241, 485
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 203
PaeI GCATGC 1 cut(s) 203
PctI GAATGC 2 cut(s) 118, 437
PfeI GAWTC 3 cut(s) 125, 186, 407
PkrI GCNGC 2 cut(s) 178, 331
PspPI GGNCC 2 cut(s) 248, 311
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 177, 330
Sau96I GGNCC 2 cut(s) 248, 311
SetI ASST 7 cut(s) 29, 59, 64, 165, 215, 424, 466
SfaNI GCATC 3 cut(s) 163, 310, 363
SfcI CTRYAG 2 cut(s) 94, 378
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 203
Sse9I AATT 4 cut(s) 36, 138, 306, 488
SspMI CTAG 2 cut(s) 222, 227
TaaI ACNGT 2 cut(s) 98, 392
TaiI ACGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 206, 424
TasI AATT 4 cut(s) 36, 138, 306, 488
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 3 cut(s) 125, 186, 407
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 176, 329
Tsp45I GTSAC 1 cut(s) 373
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 248
XceI RCATGY 1 cut(s) 203
XspI CTAG 2 cut(s) 222, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.