Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

6006413 .. 6008501

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGTGGGTCAGGAAATTGGATTAGATCACTGATATCTAACAGAAAACCCGTAAATGATCAGCAGGAGAAGTTAAGTGATAAGAGCAGCAAGAAGAAATGGAAGCTGTGGAGGATTTCATCGGAGAGCTTAGCATCTTCTTCTTTCAAGAGCCGAGGAAGCTATGCAGCTTCTTCGTTAGGTTCAGAGCTACCGTCTTTCTCGGCTGACGAGGCTTTTACTACGGCCATGGCAGCACTCATTCGAGCTCCTCCTAGGGATTTTTTGATGGTTAAGAGAGAATGGGCTTCAACAAGAATCCAGGCTGCTTTTCGTGCTTTCCTCGCAAGACAGGCGTTTAGAGCTCTGAAGGCTGTCGTGAGAATTCAGGCCATTTTTCGTGGCAGACAAGTTAGGAAACAAGCTGCCGTTACACTCAGGTGTATGCAAGCTCTTGTTCGTGTTCAGTCTCGTGTAAGAGCTCATCGTAGAGCGCCTTCTGACTCGCTTGAGCTAAAAGATCCTGTTAAGCAGACCGAGAAGGGTTGGTGTGGTAGCCCCAGAAGTATAAAAGAAGTGAAAACGAAGTTACAGATGAAGCAAGAAGGGGCTATTAAGAGGGAGAGAGCTATGGTTTATGCGCTCACACATCAGTCGAGGACGTGTCCAAGTCCAAGCGGAAGAGCGATTACGCATCATGGTTTGCGCAAGAGCAGTCCTGGTTGGAACTGGTATGATGATGTTGGGACATTTTCAAGGAAAAGTAGTGAGAGCAGTGTGTTATCTGAATATGAGACTGTAACAGTCAGGAAGAACAATCTTTCTTCAACTAGAGTTCTTGCCAGACCTCCTCTTCTTCTTCCTCCGGTTTCGTCTGGCATGAGTTATGATTCTTTACACGATGAAACATCAACATCATCGACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTTCTTGATGGTGGTGGGTACTATCGAAAGCCGAGCTACATGAGCCTGACACAATCTACTCAAGCCAAGCAGAGACAATCAGGATTATCTTGCAACGGAGATGCAAGACGCAGTGCTGGTTCAGACCAGTGTACTGATCTATACCCTCCGGGGAATGTCTGGGCCAAGAGCCAGCGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

371

Amino Acids

41.15

Weight (kDa)

10.51

Isoelectric Point (pI)

64.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	686
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	953, 1066
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	4 cut(s)	148, 291, 735, 807
AjiI	CACGTC	1 cut(s)	642
AjnI	CCWGG	2 cut(s)	300, 697
AleI	CACNNNNGTG	1 cut(s)	418
Alw21I	GWGCWC	3 cut(s)	250, 346, 463
Alw26I	GTCTC	3 cut(s)	453, 767, 1000
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	3 cut(s)	225, 369, 1095
ApeKI	GCWGC	5 cut(s)	87, 167, 233, 305, 404
ApoI	RAATTY	1 cut(s)	363
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	475, 622, 687
AspS9I	GGNCC	1 cut(s)	1095
AsuC2I	CCSGG	1 cut(s)	1083
AsuHPI	GGTGA	1 cut(s)	903
AvrII	CCTAGG	1 cut(s)	254
BanII	GRGCYC	3 cut(s)	250, 346, 463
BarI	GAAGNNNNNNTAC	4 cut(s)	460, 492, 652, 684
BauI	CACGAG	1 cut(s)	450
Bbv12I	GWGCWC	3 cut(s)	250, 346, 463
BbvI	GCAGC	5 cut(s)	99, 179, 245, 292, 391
BccI	CCATC	2 cut(s)	262, 935
BceAI	ACGGC	2 cut(s)	240, 392
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	2 cut(s)	302, 699
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	1083
BcoDI	GTCTC	3 cut(s)	453, 767, 1000
BfaI	CTAG	2 cut(s)	255, 810
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	5 cut(s)	88, 168, 234, 306, 405
BlnI	CCTAGG	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	130
BlsI	GCNGC	5 cut(s)	89, 169, 235, 307, 406
Bme1390I	CCNGG	3 cut(s)	302, 699, 1083
BmgBI	CACGTC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	1095
BmrFI	CCNGG	3 cut(s)	302, 699, 1083
BmsI	GCATC	3 cut(s)	143, 682, 1024
BpmI	CTGGAG	1 cut(s)	910
Bpu1102I	GCTNAGC	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	509, 978
BpuMI	CCSGG	1 cut(s)	1083
BsaJI	CCNNGG	4 cut(s)	154, 228, 254, 1082
BsaWI	WCCGGW	1 cut(s)	844
Bse1I	ACTGG	3 cut(s)	713, 914, 1060
BseBI	CCWGG	2 cut(s)	302, 699
BseDI	CCNNGG	4 cut(s)	154, 228, 254, 1082
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	3 cut(s)	713, 914, 1060
BseRI	GAGGAG	2 cut(s)	240, 819
BseXI	GCAGC	5 cut(s)	99, 179, 245, 292, 391
BshFI	GGCC	3 cut(s)	227, 371, 1097
BsiHKAI	GWGCWC	3 cut(s)	250, 346, 463
BsiSI	CCGG	2 cut(s)	845, 1082
BslFI	GGGAC	1 cut(s)	739
BsmAI	GTCTC	3 cut(s)	453, 767, 1000
BsmFI	GGGAC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	3 cut(s)	227, 371, 1097
Bsp1286I	GDGCHC	3 cut(s)	250, 346, 463
Bsp143I	GATC	4 cut(s)	26, 58, 499, 1069
Bsp1720I	GCTNAGC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	3 cut(s)	227, 371, 1097
BspCNI	CTCAG	1 cut(s)	429
BspPI	GGATC	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	713, 914, 1060
BssECI	CCNNGG	4 cut(s)	154, 228, 254, 1082
BssMI	GATC	4 cut(s)	26, 58, 499, 1069
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	228, 254
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	302, 699
Bst4CI	ACNGT	3 cut(s)	195, 778, 784
Bst6I	CTCTTC	2 cut(s)	655, 837
BstC8I	GCNNGC	2 cut(s)	429, 1106
BstDEI	CTNAG	2 cut(s)	130, 416
BstDSI	CCRYGG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	3 cut(s)	475, 622, 687
BstKTI	GATC	4 cut(s)	29, 61, 502, 1072
BstMAI	GTCTC	3 cut(s)	453, 767, 1000
BstMBI	GATC	4 cut(s)	26, 58, 499, 1069
BstNI	CCWGG	2 cut(s)	302, 699
BstSCI	CCNGG	3 cut(s)	300, 697, 1081
BstV1I	GCAGC	5 cut(s)	99, 179, 245, 292, 391
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	227, 371, 1097
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	642
BtsI	GCAGTG	3 cut(s)	760, 937, 1051
BtsIMutI	CAGTG	5 cut(s)	29, 760, 937, 1051, 1067
Cac8I	GCNNGC	2 cut(s)	429, 1106
CfoI	GCGC	3 cut(s)	475, 622, 687
Cfr13I	GGNCC	1 cut(s)	1095
CseI	GACGC	1 cut(s)	1050
Csp6I	GTAC	2 cut(s)	952, 1065
CviAII	CATG	4 cut(s)	229, 677, 859, 973
CviQI	GTAC	2 cut(s)	952, 1065
DdeI	CTNAG	2 cut(s)	130, 416
DpnI	GATC	4 cut(s)	28, 60, 501, 1071
DpnII	GATC	4 cut(s)	26, 58, 499, 1069
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	655, 837
EarI	CTCTTC	2 cut(s)	655, 837
Ecl136II	GAGCTC	3 cut(s)	248, 344, 461
Eco130I	CCWWGG	2 cut(s)	228, 254
Eco24I	GRGCYC	3 cut(s)	250, 346, 463
Eco32I	GATATC	1 cut(s)	36
Eco53kI	GAGCTC	3 cut(s)	248, 344, 461
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	3 cut(s)	248, 344, 461
EcoRI	GAATTC	1 cut(s)	363
EcoRII	CCWGG	2 cut(s)	300, 697
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	228, 254
EcoT38I	GRGCYC	3 cut(s)	250, 346, 463
ErhI	CCWWGG	2 cut(s)	228, 254
FaeI	CATG	4 cut(s)	232, 680, 862, 976
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	4 cut(s)	228, 676, 858, 972
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	5 cut(s)	88, 168, 234, 306, 405
FriOI	GRGCYC	3 cut(s)	250, 346, 463
Fsp4HI	GCNGC	5 cut(s)	88, 168, 234, 306, 405
FspBI	CTAG	2 cut(s)	255, 810
FspI	TGCGCA	1 cut(s)	686
GlaI	GCGC	3 cut(s)	474, 621, 686
GluI	GCNGC	5 cut(s)	88, 168, 234, 306, 405
GsuI	CTGGAG	1 cut(s)	910
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	227, 371, 1097
HapII	CCGG	2 cut(s)	845, 1082
HgaI	GACGC	1 cut(s)	1050
HhaI	GCGC	3 cut(s)	475, 622, 687
Hin1II	CATG	4 cut(s)	232, 680, 862, 976
Hin6I	GCGC	3 cut(s)	473, 620, 685
HinP1I	GCGC	3 cut(s)	473, 620, 685
HinfI	GANTC	3 cut(s)	297, 482, 869
HpaII	CCGG	2 cut(s)	845, 1082
HphI	GGTGA	1 cut(s)	903
Hpy166II	GTNNAC	1 cut(s)	1065
Hpy188I	TCNGA	6 cut(s)	124, 187, 348, 481, 766, 1057
Hpy188III	TCNNGA	6 cut(s)	12, 148, 358, 787, 938, 1014
Hpy8I	GTNNAC	1 cut(s)	1065
HpyAV	CCTTC	4 cut(s)	343, 486, 514, 578
HpyCH4III	ACNGT	3 cut(s)	195, 778, 784
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	5 cut(s)	167, 427, 920, 1026, 1037
HpyF3I	CTNAG	2 cut(s)	130, 416
HpySE526I	ACGT	1 cut(s)	641
Hsp92II	CATG	4 cut(s)	232, 680, 862, 976
HspAI	GCGC	3 cut(s)	473, 620, 685
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	4 cut(s)	26, 58, 499, 1069
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	5 cut(s)	99, 179, 245, 292, 391
LweI	GCATC	3 cut(s)	143, 682, 1024
MaeI	CTAG	2 cut(s)	255, 810
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	3 cut(s)	409, 567, 778
MalI	GATC	4 cut(s)	28, 60, 501, 1071
MboI	GATC	4 cut(s)	26, 58, 499, 1069
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	250, 346, 463
MluCI	AATT	2 cut(s)	16, 363
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	683
MseI	TTAA	4 cut(s)	74, 273, 507, 594
MslI	CAYNNNNRTG	1 cut(s)	418
MspI	CCGG	2 cut(s)	845, 1082
MspR9I	CCNGG	3 cut(s)	302, 699, 1083
Mva1269I	GAATGC	1 cut(s)	920
MvaI	CCWGG	2 cut(s)	302, 699
NciI	CCSGG	1 cut(s)	1083
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	26, 58, 499, 1069
NlaIII	CATG	4 cut(s)	232, 680, 862, 976
NmeAIII	GCCGAG	3 cut(s)	179, 182, 990
NsbI	TGCGCA	1 cut(s)	686
OliI	CACNNNNGTG	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	655
PctI	GAATGC	1 cut(s)	920
PfeI	GAWTC	2 cut(s)	297, 869
PkrI	GCNGC	5 cut(s)	89, 169, 235, 307, 406
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp124BI	GAGCTC	3 cut(s)	250, 346, 463
Psp6I	CCWGG	2 cut(s)	300, 697
PspGI	CCWGG	2 cut(s)	300, 697
PspPI	GGNCC	1 cut(s)	1095
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	2 cut(s)	953, 1066
RsaNI	GTAC	2 cut(s)	952, 1065
RseI	CAYNNNNRTG	1 cut(s)	418
SacI	GAGCTC	3 cut(s)	250, 346, 463
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	4 cut(s)	74, 273, 507, 594
SatI	GCNGC	5 cut(s)	88, 168, 234, 306, 405
Sau3AI	GATC	4 cut(s)	26, 58, 499, 1069
Sau96I	GGNCC	1 cut(s)	1095
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	302, 699, 1083
SduI	GDGCHC	3 cut(s)	250, 346, 463
SfaNI	GCATC	3 cut(s)	143, 682, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	488, 993
SmoI	CTYRAG	2 cut(s)	488, 993
Sse9I	AATT	2 cut(s)	16, 363
SsiI	CCGC	1 cut(s)	657
SspMI	CTAG	2 cut(s)	255, 810
SstI	GAGCTC	3 cut(s)	250, 346, 463
StyD4I	CCNGG	3 cut(s)	300, 697, 1081
StyI	CCWWGG	2 cut(s)	228, 254
TaaI	ACNGT	3 cut(s)	195, 778, 784
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	4 cut(s)	244, 635, 899, 958
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	16, 363
TatI	WGTACW	1 cut(s)	1064
TfiI	GAWTC	2 cut(s)	297, 869
Tru1I	TTAA	4 cut(s)	74, 273, 507, 594
Tru9I	TTAA	4 cut(s)	74, 273, 507, 594
TscAI	CASTG	5 cut(s)	36, 760, 937, 1051, 1067
TseI	GCWGC	5 cut(s)	87, 167, 233, 305, 404
TspDTI	ATGAA	3 cut(s)	108, 590, 897
TspGWI	ACGGA	1 cut(s)	1044
TspRI	CASTG	5 cut(s)	36, 760, 937, 1051, 1067
XapI	RAATTY	1 cut(s)	363
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	2 cut(s)	255, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.