Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

60655642 .. 60658860

Gene Structure 3219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGTACTCCAGGAAAATGGCTCAAGTCCCTCATCAATCCCAAAAAGCCCATAACAACTGACCAAAGCAAGAAGAAATGGAAGCTATGGAGGAGTTCATCGGATGGGTTAGGATCTTCCAGTAAAGGTGGTGTGAAGAAGGTGGCGGGTTCAGAGCTGTTGGATTCTGCAAATGTAGTCGATCATGAGTTGGCTTATGCCATGGCTACTCTGCTTCGGGCTCAGCCTAAAGATTTCAAGATAGTCAAGCGAGAGTGGGCTGCTATTCGGATCCAAACCGTGTTTCGGGGATTCTTGGCAAGGCAGGCTTTAAGGGCCTTGAAAGCATTAGTAAGGCTTCAAGCTATATTTCGTGGGAGGCGGGTCAGGAAGCAAGCAGCTGTTACATTGAGGTGCATGCAGGCACTTGTTCGAGTTCAGACTCGAGTTCGAGCACAGAGATCCTCAGAAGCTGCACAAGACTTGCTGGATGAACGTCAGTCCCAAGCTGATGATCCCGTTAAGCAGGCTGAGCAAGGATGGTGTGATAGTCCAGGAACAGTGAGTGAAGTTAGAGCAAAGTTACAAATGAGGCAAAGAGGAAACATAAAGAGGGATCGAGCAATTGCATACTCCCTCTCTCAACAGAGGCCAAGATCATGTTCCAGTCCATATAGCAGGACTAACAAGACAGCAAAGGTTACTAAGAGTCCAAGAGTAGGCAATAAAAATTCTGAATGGAACTGGTTAGAAAATTGGATGGCGACCAAGCCATGGGAAAATAGACTGATGGAGGAGGTCCAAACTGTGCCATCAGAGATGAATCTTTATAATTCCAGGAAAAGTGGAGATGACATTGCTGGCTTTTATCCATTTTCTTCAGATCAGAACTCAGTGAAACTGCGAAGGAATACTGTCACAACCAGGATTTCTGCTAGGCCATCTCAATCAATGAGTCCAATTACTCGCTCATCTTCTACTCCAAGTTCTGATTTTCTAAAGGACGAGAGCTCGTCATCCACTTCATTTACTTCTGCATCTCCTACTATAGCGTCTAGCAACCCTACCAAGGTAGAGGAAAGTAATATGTGCAAACCAAGCTACATGAATCTCACAGAGTCAATTAAGGCGAAGAAGAGAAGTTCCAGTGGTCAAAATATGCAGAGGTATTTCATGGAGGAGTATCAGTTCCATAGCAAAGCTCTTTCTAATGCGGATACAAGGAGCATCAATGGAGGTTCTGATTTTTCGGTTAATTTCTGCAATGATCTATACCCTCCGGTATCATTGGGAAGAGCAGAAAGAGCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

432

Amino Acids

48.5

Weight (kDa)

10.25

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	753
AciI	CCGC	3 cut(s)	146, 361, 1193
AclWI	GGATC	6 cut(s)	121, 265, 278, 435, 488, 603
AcsI	RAATTY	1 cut(s)	709
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	285, 698, 753, 1048
AgsI	TTSAA	3 cut(s)	238, 322, 341
AjnI	CCWGG	4 cut(s)	10, 532, 815, 902
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 625, 657
AloI	GAACNNNNNNTCC	2 cut(s)	1151, 1183
AluBI	AGCT	9 cut(s)	85, 157, 344, 380, 452, 488, 990, 1080, 1181
AluI	AGCT	9 cut(s)	85, 157, 344, 380, 452, 488, 990, 1080, 1181
Alw21I	GWGCWC	2 cut(s)	436, 992
AlwI	GGATC	6 cut(s)	121, 265, 278, 435, 488, 603
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	3 cut(s)	315, 629, 917
ApeKI	GCWGC	3 cut(s)	260, 377, 452
ApoI	RAATTY	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	315, 778
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	778
BamHI	GGATCC	1 cut(s)	270
BanII	GRGCYC	2 cut(s)	223, 992
Bbv12I	GWGCWC	2 cut(s)	436, 992
BbvI	GCAGC	3 cut(s)	247, 389, 439
BccI	CCATC	6 cut(s)	98, 513, 733, 763, 799, 928
BciT130I	CCWGG	4 cut(s)	12, 534, 817, 904
BciVI	GTATCC	1 cut(s)	1189
BfaI	CTAG	2 cut(s)	915, 1035
BfmI	CTRYAG	1 cut(s)	1026
BfuI	GTATCC	1 cut(s)	1189
BisI	GCNGC	3 cut(s)	261, 378, 453
BlpI	GCTNAGC	2 cut(s)	222, 510
BlsI	GCNGC	3 cut(s)	262, 379, 454
Bme1390I	CCNGG	4 cut(s)	12, 534, 817, 904
Bme18I	GGWCC	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	315, 778
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	4 cut(s)	12, 534, 817, 904
BmsI	GCATC	2 cut(s)	1025, 1215
Bpu1102I	GCTNAGC	2 cut(s)	222, 510
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	201, 752, 1047
BsaWI	WCCGGW	1 cut(s)	1258
BsaXI	ACNNNNNCTCC	2 cut(s)	1151, 1181
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 698, 753, 1048
Bse1I	ACTGG	4 cut(s)	120, 645, 728, 1125
Bse3DI	GCAATG	2 cut(s)	834, 1249
BseBI	CCWGG	4 cut(s)	12, 534, 817, 904
BseDI	CCNNGG	3 cut(s)	201, 752, 1047
BseGI	GGATG	5 cut(s)	109, 475, 524, 744, 995
BseLI	CCNNNNNNNGG	4 cut(s)	285, 698, 753, 1048
BseMI	GCAATG	2 cut(s)	834, 1249
BseMII	CTCAG	4 cut(s)	236, 459, 501, 885
BseNI	ACTGG	4 cut(s)	120, 645, 728, 1125
BseRI	GAGGAG	3 cut(s)	106, 788, 1172
BseXI	GCAGC	3 cut(s)	247, 389, 439
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	317, 631, 919
BsiHKAI	GWGCWC	2 cut(s)	436, 992
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	1259
BslFI	GGGAC	2 cut(s)	13, 466
BslI	CCNNNNNNNGG	4 cut(s)	285, 698, 753, 1048
BsmFI	GGGAC	2 cut(s)	13, 466
BsnI	GGCC	3 cut(s)	317, 631, 919
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	3 cut(s)	223, 436, 992
Bsp143I	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
Bsp1720I	GCTNAGC	2 cut(s)	222, 510
Bsp19I	CCATGG	2 cut(s)	201, 752
BspACI	CCGC	3 cut(s)	146, 361, 1193
BspANI	GGCC	3 cut(s)	317, 631, 919
BspCNI	CTCAG	4 cut(s)	235, 458, 502, 884
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	6 cut(s)	121, 265, 278, 435, 488, 603
BspQI	GCTCTTC	1 cut(s)	1267
BsrDI	GCAATG	2 cut(s)	834, 1249
BsrI	ACTGG	4 cut(s)	120, 645, 728, 1125
BssECI	CCNNGG	3 cut(s)	201, 752, 1047
BssMI	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
BssT1I	CCWWGG	3 cut(s)	201, 752, 1047
Bst2UI	CCWGG	4 cut(s)	12, 534, 817, 904
Bst4CI	ACNGT	4 cut(s)	280, 541, 787, 895
Bst6I	CTCTTC	2 cut(s)	1109, 1267
BstC8I	GCNNGC	6 cut(s)	306, 375, 398, 402, 507, 841
BstDEI	CTNAG	5 cut(s)	222, 445, 510, 684, 871
BstDSI	CCRYGG	2 cut(s)	201, 752
BstF5I	GGATG	5 cut(s)	109, 475, 524, 744, 995
BstKTI	GATC	9 cut(s)	116, 184, 273, 443, 496, 598, 638, 865, 1249
BstMBI	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
BstMWI	GCNNNNNNNGC	6 cut(s)	305, 314, 323, 511, 1077, 1283
BstNI	CCWGG	4 cut(s)	12, 534, 817, 904
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	4 cut(s)	10, 532, 815, 902
BstSFI	CTRYAG	1 cut(s)	1026
BstV1I	GCAGC	3 cut(s)	247, 389, 439
BstX2I	RGATCY	3 cut(s)	113, 270, 440
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	3 cut(s)	113, 270, 440
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	3 cut(s)	317, 631, 919
BtgI	CCRYGG	2 cut(s)	201, 752
BtsCI	GGATG	5 cut(s)	109, 475, 524, 744, 995
BtsIMutI	CAGTG	3 cut(s)	546, 879, 1132
Cac8I	GCNNGC	6 cut(s)	306, 375, 398, 402, 507, 841
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	315, 778
CseI	GACGC	1 cut(s)	1020
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	7 cut(s)	185, 202, 397, 639, 753, 1084, 1153
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	5 cut(s)	222, 445, 510, 684, 871
DpnI	GATC	9 cut(s)	115, 183, 272, 442, 495, 597, 637, 864, 1248
DpnII	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
Eam1104I	CTCTTC	2 cut(s)	1109, 1267
EarI	CTCTTC	2 cut(s)	1109, 1267
Ecl136II	GAGCTC	1 cut(s)	990
Eco130I	CCWWGG	3 cut(s)	201, 752, 1047
Eco24I	GRGCYC	2 cut(s)	223, 992
Eco47I	GGWCC	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	1 cut(s)	843
Eco88I	CYCGRG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	4 cut(s)	10, 532, 815, 902
EcoT14I	CCWWGG	3 cut(s)	201, 752, 1047
EcoT38I	GRGCYC	2 cut(s)	223, 992
ErhI	CCWWGG	3 cut(s)	201, 752, 1047
FaeI	CATG	7 cut(s)	188, 205, 400, 642, 756, 1087, 1156
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	2 cut(s)	13, 466
FatI	CATG	7 cut(s)	184, 201, 396, 638, 752, 1083, 1152
FauI	CCCGC	2 cut(s)	139, 354
Fnu4HI	GCNGC	3 cut(s)	261, 378, 453
FokI	GGATG	5 cut(s)	116, 482, 531, 751, 982
FriOI	GRGCYC	2 cut(s)	223, 992
Fsp4HI	GCNGC	3 cut(s)	261, 378, 453
FspBI	CTAG	2 cut(s)	915, 1035
GluI	GCNGC	3 cut(s)	261, 378, 453
HaeIII	GGCC	3 cut(s)	317, 631, 919
HapII	CCGG	1 cut(s)	1259
HgaI	GACGC	1 cut(s)	1020
Hin1II	CATG	7 cut(s)	188, 205, 400, 642, 756, 1087, 1156
HinfI	GANTC	8 cut(s)	164, 291, 421, 688, 802, 934, 1087, 1097
HpaII	CCGG	1 cut(s)	1259
Hpy188III	TCNNGA	3 cut(s)	185, 238, 367
HpyAV	CCTTC	2 cut(s)	133, 879
HpyCH4III	ACNGT	4 cut(s)	280, 541, 787, 895
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	9 cut(s)	170, 396, 400, 455, 608, 1016, 1071, 1141, 1242
HpyF10VI	GCNNNNNNNGC	6 cut(s)	305, 314, 323, 511, 1077, 1283
HpyF3I	CTNAG	5 cut(s)	222, 445, 510, 684, 871
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	7 cut(s)	188, 205, 400, 642, 756, 1087, 1156
Kzo9I	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
LguI	GCTCTTC	1 cut(s)	1267
LmnI	GCTCC	1 cut(s)	1203
Lsp1109I	GCAGC	3 cut(s)	247, 389, 439
LweI	GCATC	2 cut(s)	1025, 1215
MaeI	CTAG	2 cut(s)	915, 1035
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	4 cut(s)	382, 561, 679, 895
MalI	GATC	9 cut(s)	115, 183, 272, 442, 495, 597, 637, 864, 1248
MboI	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
MboII	GAAGA	8 cut(s)	85, 108, 148, 849, 945, 1123, 1126, 1284
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	3 cut(s)	113, 270, 440
MhlI	GDGCHC	3 cut(s)	223, 436, 992
MluCI	AATT	7 cut(s)	603, 709, 733, 811, 939, 1101, 1234
MlyI	GAGTC	4 cut(s)	415, 697, 943, 1106
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	4 cut(s)	311, 501, 1104, 1233
MslI	CAYNNNNRTG	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	1259
MspR9I	CCNGG	4 cut(s)	12, 534, 817, 904
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	4 cut(s)	12, 534, 817, 904
MwoI	GCNNNNNNNGC	6 cut(s)	305, 314, 323, 511, 1077, 1283
NcoI	CCATGG	2 cut(s)	201, 752
NdeII	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
NlaIII	CATG	7 cut(s)	188, 205, 400, 642, 756, 1087, 1156
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	895
NspI	RCATGY	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	423
PagI	TCATGA	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	1267
PfeI	GAWTC	4 cut(s)	164, 291, 802, 1087
PflMI	CCANNNNNTGG	1 cut(s)	753
PfoI	TCCNGGA	3 cut(s)	10, 532, 815
PkrI	GCNGC	3 cut(s)	262, 379, 454
PleI	GAGTC	4 cut(s)	415, 696, 942, 1105
PpsI	GAGTC	4 cut(s)	415, 696, 942, 1105
PsiI	TTATAA	1 cut(s)	810
Psp124BI	GAGCTC	1 cut(s)	992
Psp6I	CCWGG	4 cut(s)	10, 532, 815, 902
PspGI	CCWGG	4 cut(s)	10, 532, 815, 902
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	315, 778
PspXI	VCTCGAGB	1 cut(s)	423
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	113, 270, 440
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	391
SacI	GAGCTC	1 cut(s)	992
SapI	GCTCTTC	1 cut(s)	1267
SaqAI	TTAA	4 cut(s)	311, 501, 1104, 1233
SatI	GCNGC	3 cut(s)	261, 378, 453
Sau3AI	GATC	9 cut(s)	113, 181, 270, 440, 493, 595, 635, 862, 1246
Sau96I	GGNCC	2 cut(s)	315, 778
SchI	GAGTC	4 cut(s)	415, 697, 943, 1106
ScrFI	CCNGG	4 cut(s)	12, 534, 817, 904
SduI	GDGCHC	3 cut(s)	223, 436, 992
SfaNI	GCATC	2 cut(s)	1025, 1215
SfcI	CTRYAG	1 cut(s)	1026
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	778
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	391
SmlI	CTYRAG	2 cut(s)	23, 423
SmoI	CTYRAG	2 cut(s)	23, 423
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	7 cut(s)	603, 709, 733, 811, 939, 1101, 1234
SsiI	CCGC	3 cut(s)	146, 361, 1193
SspMI	CTAG	2 cut(s)	915, 1035
SstI	GAGCTC	1 cut(s)	992
StyD4I	CCNGG	4 cut(s)	10, 532, 815, 902
StyI	CCWWGG	3 cut(s)	201, 752, 1047
TaaI	ACNGT	4 cut(s)	280, 541, 787, 895
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	5 cut(s)	180, 412, 424, 430, 598
TasI	AATT	7 cut(s)	603, 709, 733, 811, 939, 1101, 1234
TfiI	GAWTC	4 cut(s)	164, 291, 802, 1087
Tru1I	TTAA	4 cut(s)	311, 501, 1104, 1233
Tru9I	TTAA	4 cut(s)	311, 501, 1104, 1233
TscAI	CASTG	3 cut(s)	546, 879, 1132
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	3 cut(s)	260, 377, 452
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	6 cut(s)	87, 486, 815, 993, 1100, 1141
TspRI	CASTG	3 cut(s)	546, 879, 1132
Van91I	CCANNNNNTGG	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	1 cut(s)	709
XceI	RCATGY	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	423
XspI	CTAG	2 cut(s)	915, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.