Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

62896831 .. 62900001

Gene Structure 3171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG444600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTACTCCAGGAAAATGGTTCAAGTCCCTCATCAATCCCAAAAAGCCCATAACAATTGACCAAGACAAGGGCAAGAAGAAATGGAAGCTATGGAGGAGTTCATCGGATGGGTTAGGATCTTCTAGTAAAGGTTGTGTGAAGAAGGTGGCGGGTTCAGAGCTGTTGGATTCTGCAAATGTAGTCGATCATGAGTTGGCTGCTGCCATGGCTACTCTGCTTCGGGCTCAGCCTAAAGATTTCAAGATAGTCAAGCGAGAGTGGGCTGCTATTCGGATCCAAACCGTGTTTCGGGGATTCTTGGCAAGGCAGGCTTTAAGGGCCTTGAAAGCATTAGTAAGGCTTCAAGCTATATTTCGTGGGAGGCGGGTCAGGAAGCAAGCAGCTGTTACATTGAGGTGCATGCAGGCACTTGTTCGAGTTCAGACTCGAGTTCGAGCACAGAGATCCTCAGAAGCTGCACAAGACTTGCTGGATGAACGTCAGTCCCAAGCTGATGATCCCGTTAAGCAGGCTGAGCAAGGATGGTGTGATAGTCCAGGAACAAGGAACATAAAGAGGGATCGAGCAATTGCATACTCCCTCTCTCAACAGAGGCCAAGATCATGTTTCAGTCCATATAGCAGGACTAACAAGACAGCAAAGGTTACTAAGAGTCCAAGAGTAGGCAATAACAATTCTGAATGGAACTGGTTAGAAAATTGGATGGCGACCAAGCCATGGGAAAATAGACTGATGGAGGAGGTCCAAACTGTGCCGTCAGAGATGAATCTTTATAATTCCAGGAAAAGTGGAGATGACATTGCTGGCTTTTATCCATGTTCTTCAGAACAGAACTCAGTGAAAGTGCGAAGGAATACTGTCACAACCAGGATTTCTGCTAGGCCATCTCAATCAATGAGTCCAATAACTCGCTCGTCTTCTACTCCAAGTTCTGATTTTCTAAGGGACGAGAGCTCGTCATCCACTTCATTTACTTCTGCTTCTCCTACTATAGCGTCTAGCAACGCTACCAAGGTAGAGGAAAGTAATATGTGCAAACCAAGCTACATGAATCTCACAGAGTCAATTAAGGCGAAGAAGAGAAGTTCCAATGGTCAAAATATGCAGAGGTATTTCATGGAGGAGTATCAGTTCCATAGCAAAGCTCTTTCTAATGGGGATACAAGGAGCATCAATGGAGGTTCTGATTTTTCGGTTAATTTCTGCAATGATCTATACCCTCCGGTATCATTGGGAAGAGCAGAAAGAGCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

420

Amino Acids

47.24

Weight (kDa)

10.13

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
AccB7I	CCANNNNNTGG	1 cut(s)	720
AciI	CCGC	2 cut(s)	152, 367
AclWI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 570
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	70, 291, 665, 720
AgsI	TTSAA	4 cut(s)	25, 244, 328, 347
AjnI	CCWGG	4 cut(s)	10, 538, 782, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AloI	GAACNNNNNNTCC	2 cut(s)	1118, 1150
AluBI	AGCT	9 cut(s)	91, 163, 350, 386, 458, 494, 957, 1047, 1148
AluI	AGCT	9 cut(s)	91, 163, 350, 386, 458, 494, 957, 1047, 1148
Alw21I	GWGCWC	2 cut(s)	442, 959
AlwI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 570
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	3 cut(s)	321, 596, 884
ApeKI	GCWGC	5 cut(s)	200, 203, 266, 383, 458
AspS9I	GGNCC	2 cut(s)	321, 745
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	745
BamHI	GGATCC	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	229, 959
BbsI	GAAGAC	1 cut(s)	912
Bbv12I	GWGCWC	2 cut(s)	442, 959
BbvI	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BccI	CCATC	5 cut(s)	104, 519, 700, 730, 895
BceAI	ACGGC	1 cut(s)	742
BciT130I	CCWGG	4 cut(s)	12, 540, 784, 871
BciVI	GTATCC	1 cut(s)	1156
BfaI	CTAG	3 cut(s)	126, 882, 1002
BfmI	CTRYAG	1 cut(s)	993
BfuI	GTATCC	1 cut(s)	1156
BisI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
BlpI	GCTNAGC	2 cut(s)	228, 516
BlsI	GCNGC	5 cut(s)	202, 205, 268, 385, 460
Bme1390I	CCNGG	4 cut(s)	12, 540, 784, 871
Bme18I	GGWCC	1 cut(s)	745
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	321, 745
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	4 cut(s)	12, 540, 784, 871
BmsI	GCATC	1 cut(s)	1182
BpiI	GAAGAC	1 cut(s)	912
Bpu1102I	GCTNAGC	2 cut(s)	228, 516
BsaJI	CCNNGG	3 cut(s)	207, 719, 1014
BsaWI	WCCGGW	1 cut(s)	1225
BsaXI	ACNNNNNCTCC	2 cut(s)	1118, 1148
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 291, 665, 720
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	2 cut(s)	801, 1216
BseBI	CCWGG	4 cut(s)	12, 540, 784, 871
BseDI	CCNNGG	3 cut(s)	207, 719, 1014
BseGI	GGATG	5 cut(s)	115, 481, 530, 711, 962
BseLI	CCNNNNNNNGG	4 cut(s)	70, 291, 665, 720
BseMI	GCAATG	2 cut(s)	801, 1216
BseMII	CTCAG	4 cut(s)	242, 465, 507, 852
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	3 cut(s)	112, 755, 1139
BseXI	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	323, 598, 886
BsiHKAI	GWGCWC	2 cut(s)	442, 959
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	1226
BslFI	GGGAC	3 cut(s)	13, 472, 962
BslI	CCNNNNNNNGG	4 cut(s)	70, 291, 665, 720
BsmFI	GGGAC	3 cut(s)	13, 472, 962
BsnI	GGCC	3 cut(s)	323, 598, 886
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	3 cut(s)	229, 442, 959
Bsp143I	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
Bsp1720I	GCTNAGC	2 cut(s)	228, 516
Bsp19I	CCATGG	2 cut(s)	207, 719
BspACI	CCGC	2 cut(s)	152, 367
BspANI	GGCC	3 cut(s)	323, 598, 886
BspCNI	CTCAG	4 cut(s)	241, 464, 508, 851
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 570
BspQI	GCTCTTC	1 cut(s)	1234
BsrDI	GCAATG	2 cut(s)	801, 1216
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	207, 719, 1014
BssMI	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
BssT1I	CCWWGG	3 cut(s)	207, 719, 1014
Bst2UI	CCWGG	4 cut(s)	12, 540, 784, 871
Bst4CI	ACNGT	3 cut(s)	286, 754, 862
Bst6I	CTCTTC	2 cut(s)	1076, 1234
BstC8I	GCNNGC	6 cut(s)	312, 381, 404, 408, 513, 808
BstDEI	CTNAG	6 cut(s)	228, 451, 516, 651, 838, 944
BstDSI	CCRYGG	2 cut(s)	207, 719
BstF5I	GGATG	5 cut(s)	115, 481, 530, 711, 962
BstKTI	GATC	8 cut(s)	122, 190, 279, 449, 502, 565, 605, 1216
BstMBI	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1044, 1250
BstNI	CCWGG	4 cut(s)	12, 540, 784, 871
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	10, 538, 782, 869
BstSFI	CTRYAG	1 cut(s)	993
BstV1I	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BstV2I	GAAGAC	1 cut(s)	912
BstX2I	RGATCY	3 cut(s)	119, 276, 446
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	3 cut(s)	119, 276, 446
BsuI	GTATCC	1 cut(s)	1156
BsuRI	GGCC	3 cut(s)	323, 598, 886
BtgI	CCRYGG	2 cut(s)	207, 719
BtsCI	GGATG	5 cut(s)	115, 481, 530, 711, 962
BtsIMutI	CAGTG	1 cut(s)	846
Cac8I	GCNNGC	6 cut(s)	312, 381, 404, 408, 513, 808
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	321, 745
CseI	GACGC	1 cut(s)	987
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	8 cut(s)	191, 208, 403, 606, 720, 819, 1051, 1120
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	6 cut(s)	228, 451, 516, 651, 838, 944
DpnI	GATC	8 cut(s)	121, 189, 278, 448, 501, 564, 604, 1215
DpnII	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
Eam1104I	CTCTTC	2 cut(s)	1076, 1234
EarI	CTCTTC	2 cut(s)	1076, 1234
Ecl136II	GAGCTC	1 cut(s)	957
Eco130I	CCWWGG	3 cut(s)	207, 719, 1014
Eco24I	GRGCYC	2 cut(s)	229, 959
Eco47I	GGWCC	1 cut(s)	745
Eco53kI	GAGCTC	1 cut(s)	957
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	4 cut(s)	10, 538, 782, 869
EcoT14I	CCWWGG	3 cut(s)	207, 719, 1014
EcoT38I	GRGCYC	2 cut(s)	229, 959
ErhI	CCWWGG	3 cut(s)	207, 719, 1014
FaeI	CATG	8 cut(s)	194, 211, 406, 609, 723, 822, 1054, 1123
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	3 cut(s)	13, 472, 962
FatI	CATG	8 cut(s)	190, 207, 402, 605, 719, 818, 1050, 1119
FauI	CCCGC	2 cut(s)	145, 360
Fnu4HI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
FokI	GGATG	5 cut(s)	122, 488, 537, 718, 949
FriOI	GRGCYC	2 cut(s)	229, 959
Fsp4HI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
FspBI	CTAG	3 cut(s)	126, 882, 1002
GluI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
HaeIII	GGCC	3 cut(s)	323, 598, 886
HapII	CCGG	1 cut(s)	1226
HgaI	GACGC	1 cut(s)	987
Hin1II	CATG	8 cut(s)	194, 211, 406, 609, 723, 822, 1054, 1123
HinfI	GANTC	8 cut(s)	170, 297, 427, 655, 769, 901, 1054, 1064
HpaII	CCGG	1 cut(s)	1226
Hpy188III	TCNNGA	3 cut(s)	191, 244, 373
HpyAV	CCTTC	2 cut(s)	139, 846
HpyCH4III	ACNGT	3 cut(s)	286, 754, 862
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	8 cut(s)	176, 402, 406, 461, 575, 1038, 1108, 1209
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1044, 1250
HpyF3I	CTNAG	6 cut(s)	228, 451, 516, 651, 838, 944
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	8 cut(s)	194, 211, 406, 609, 723, 822, 1054, 1123
Kzo9I	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
LguI	GCTCTTC	1 cut(s)	1234
LmnI	GCTCC	1 cut(s)	1170
Lsp1109I	GCAGC	5 cut(s)	187, 190, 253, 395, 445
LweI	GCATC	1 cut(s)	1182
MaeI	CTAG	3 cut(s)	126, 882, 1002
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	3 cut(s)	388, 646, 862
MalI	GATC	8 cut(s)	121, 189, 278, 448, 501, 564, 604, 1215
MboI	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
MboII	GAAGA	8 cut(s)	91, 114, 154, 816, 912, 1090, 1093, 1251
MfeI	CAATTG	2 cut(s)	57, 570
MflI	RGATCY	3 cut(s)	119, 276, 446
MhlI	GDGCHC	3 cut(s)	229, 442, 959
MluCI	AATT	7 cut(s)	57, 570, 676, 700, 778, 1068, 1201
MlyI	GAGTC	4 cut(s)	421, 664, 910, 1073
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	4 cut(s)	317, 507, 1071, 1200
MslI	CAYNNNNRTG	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	1226
MspR9I	CCNGG	4 cut(s)	12, 540, 784, 871
MunI	CAATTG	2 cut(s)	57, 570
MvaI	CCWGG	4 cut(s)	12, 540, 784, 871
MwoI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1044, 1250
NcoI	CCATGG	2 cut(s)	207, 719
NdeII	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
NlaIII	CATG	8 cut(s)	194, 211, 406, 609, 723, 822, 1054, 1123
NlaIV	GGNNCC	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	862
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	1234
PfeI	GAWTC	4 cut(s)	170, 297, 769, 1054
PflMI	CCANNNNNTGG	1 cut(s)	720
PfoI	TCCNGGA	3 cut(s)	10, 538, 782
PkrI	GCNGC	5 cut(s)	202, 205, 268, 385, 460
PleI	GAGTC	4 cut(s)	421, 663, 909, 1072
PpsI	GAGTC	4 cut(s)	421, 663, 909, 1072
PsiI	TTATAA	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	959
Psp6I	CCWGG	4 cut(s)	10, 538, 782, 869
PspGI	CCWGG	4 cut(s)	10, 538, 782, 869
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	321, 745
PspXI	VCTCGAGB	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	119, 276, 446
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	959
SapI	GCTCTTC	1 cut(s)	1234
SaqAI	TTAA	4 cut(s)	317, 507, 1071, 1200
SatI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
Sau3AI	GATC	8 cut(s)	119, 187, 276, 446, 499, 562, 602, 1213
Sau96I	GGNCC	2 cut(s)	321, 745
SchI	GAGTC	4 cut(s)	421, 664, 910, 1073
ScrFI	CCNGG	4 cut(s)	12, 540, 784, 871
SduI	GDGCHC	3 cut(s)	229, 442, 959
SfaNI	GCATC	1 cut(s)	1182
SfcI	CTRYAG	1 cut(s)	993
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	745
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	7 cut(s)	57, 570, 676, 700, 778, 1068, 1201
SsiI	CCGC	2 cut(s)	152, 367
SspMI	CTAG	3 cut(s)	126, 882, 1002
SstI	GAGCTC	1 cut(s)	959
StyD4I	CCNGG	4 cut(s)	10, 538, 782, 869
StyI	CCWWGG	3 cut(s)	207, 719, 1014
TaaI	ACNGT	3 cut(s)	286, 754, 862
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	5 cut(s)	186, 418, 430, 436, 565
TasI	AATT	7 cut(s)	57, 570, 676, 700, 778, 1068, 1201
TfiI	GAWTC	4 cut(s)	170, 297, 769, 1054
Tru1I	TTAA	4 cut(s)	317, 507, 1071, 1200
Tru9I	TTAA	4 cut(s)	317, 507, 1071, 1200
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	5 cut(s)	200, 203, 266, 383, 458
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	6 cut(s)	93, 492, 782, 960, 1067, 1108
TspRI	CASTG	1 cut(s)	846
Van91I	CCANNNNNTGG	1 cut(s)	720
VpaK11BI	GGWCC	1 cut(s)	745
XceI	RCATGY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	429
XspI	CTAG	3 cut(s)	126, 882, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.