Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

26803107 .. 26806984

Gene Structure 3878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33840.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGTACTCCTGGAAAATGGCTCAAGTCTCTCATCAATCCCAAAAAGCCCACATTAACTGACCAAGAGAAGAGCAAGAAGAAATGGAAGCTATGGAGGAGTTCATCGGATGGGTTTGGAACATCGAGCAACGGTGGTGTGAAGAAGGAGTATGTGGCGTGTTCAGAGGCGTTGGATTCTGCAAATGTGATTGATCATGAGTTGGCTGCTGCTATGGCTACTCTGCTTCGAGCTCAGCCTAAAGATTTCAAGGTAGTTAGGCGAGAGTGGGCTGCTCTTCGGATCCAAACCGTGTTCCGGGGATTCTTGGCTAGGCAGGCTTTGAGAGCCTTGAAAGCCTTAGTAAGGCTTCAAGCTATATTTCGTGGGAGGCGAGTCAGGAAGCAAGCTGCTGTTACATTGAGGTGCATGCAGGCCCTTGTTCGAGTTCAGGCTCGAGTTCGAGCACAGAGATCCTCAGAAGCTGATGAACGTCAGTCCCAAGCTGATGACCCTGTTAAGCAGGCTGAGCAAGGATGGTGTGATAGTCCAGGAACAGTGAGTGAAATTAGAGCAAAGCTACAAATGAGGCAAAAAGCAAACCTAAAGAGGGATCGAGCAATTGCATACTCCCTCTCTCAACAGAAACCAAGATCATGTTCCAGTCCATATAGCAGGACTAACAAGACGGCAAAGGTTGCTAAGAGTCCAAGACTAGGAGATAACAATTCGGAATTGAACTGGTTAGAAAATTGGATGGCGACCAAGCCATGGGAAAATAGGCTGATGGAAGAGGTCCAAATTGTGCCATCAGAGACGAATCCTTATAATTCCAGGATAAGTGGAGATGATATTGATGGCTTTTATCCATTTTCTTCAGCACAGAATTCTGTGAAAGTGCAAAGGAAGACTGTCACAACCAGAATTTCTCCTAGGCCCTCTCAATCAATGAGTCCGAAAACTCGTTCATCTTCTACCCCAAGTACTGATTATCTTAAGGACGGGAGCTCATCATCGACTTCATTTACTTCTGCATCTCCTACTGCAGTGTCTAGCAATCCTTCCAAGGTAGAAGAAAGTAATATGTGCAAACCAAGCTACATGAATCTCACAGAATCAATTAAGGCGAAGAAGAGAAGTTCCAATGGTCAAAATATGCAGAGGTACTTCATGGAGGAGTATCGGTTCCATAGCAAAGCACTTTCTAATGGGGATACAAGGAGCATCAATGGCAGTTCTGATTTTTCGGCTAATTTATGCAATGATCTATACCCTCCGGTATCACAGGGAAGAGCTGAAAGAGCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

431

Amino Acids

48.24

Weight (kDa)

10.13

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	807
AccB7I	CCANNNNNTGG	1 cut(s)	750
AclWI	GGATC	4 cut(s)	277, 290, 447, 600
AcsI	RAATTY	2 cut(s)	865, 903
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	3 cut(s)	7, 964, 1145
AfiI	CCNNNNNNNGG	5 cut(s)	297, 345, 589, 695, 750
AflII	CTTAAG	1 cut(s)	974
AgsI	TTSAA	4 cut(s)	250, 334, 353, 718
AjnI	CCWGG	3 cut(s)	10, 529, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	622, 654
AloI	GAACNNNNNNTCC	2 cut(s)	1148, 1180
Alw21I	GWGCWC	3 cut(s)	235, 448, 989
Alw26I	GTCTC	2 cut(s)	33, 788
AlwI	GGATC	4 cut(s)	277, 290, 447, 600
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	2 cut(s)	414, 914
ApeKI	GCWGC	4 cut(s)	206, 209, 272, 389
ApoI	RAATTY	2 cut(s)	865, 903
AspA2I	CCTAGG	1 cut(s)	911
AspS9I	GGNCC	3 cut(s)	415, 775, 915
AsuC2I	CCSGG	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	775
AvrII	CCTAGG	1 cut(s)	911
BamHI	GGATCC	1 cut(s)	282
BanII	GRGCYC	2 cut(s)	235, 989
BbsI	GAAGAC	1 cut(s)	893
Bbv12I	GWGCWC	3 cut(s)	235, 448, 989
BbvI	GCAGC	4 cut(s)	193, 196, 259, 376
BccI	CCATC	6 cut(s)	104, 510, 730, 760, 796, 830
BceAI	ACGGC	1 cut(s)	684
BciT130I	CCWGG	3 cut(s)	12, 531, 814
BciVI	GTATCC	1 cut(s)	1186
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	33, 788
BfaI	CTAG	4 cut(s)	312, 695, 912, 1032
BfmI	CTRYAG	1 cut(s)	1023
BfrI	CTTAAG	1 cut(s)	974
BfuI	GTATCC	1 cut(s)	1186
BisI	GCNGC	4 cut(s)	207, 210, 273, 390
BlnI	CCTAGG	1 cut(s)	911
BlpI	GCTNAGC	2 cut(s)	234, 507
BlsI	GCNGC	4 cut(s)	208, 211, 274, 391
BmcAI	AGTACT	1 cut(s)	964
Bme1390I	CCNGG	4 cut(s)	12, 299, 531, 814
Bme18I	GGWCC	1 cut(s)	775
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	3 cut(s)	415, 775, 915
BmiI	GGNNCC	2 cut(s)	284, 1166
BmrFI	CCNGG	4 cut(s)	12, 299, 531, 814
BmsI	GCATC	2 cut(s)	1022, 1212
BpiI	GAAGAC	1 cut(s)	893
Bpu1102I	GCTNAGC	2 cut(s)	234, 507
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	298, 749, 911, 1044
BsaWI	WCCGGW	1 cut(s)	1255
BsaXI	ACNNNNNCTCC	2 cut(s)	1148, 1178
Bsc4I	CCNNNNNNNGG	5 cut(s)	297, 345, 589, 695, 750
Bse1I	ACTGG	2 cut(s)	642, 725
Bse3DI	GCAATG	1 cut(s)	1246
BseBI	CCWGG	3 cut(s)	12, 531, 814
BseDI	CCNNGG	4 cut(s)	298, 749, 911, 1044
BseGI	GGATG	3 cut(s)	115, 521, 741
BseLI	CCNNNNNNNGG	5 cut(s)	297, 345, 589, 695, 750
BseMI	GCAATG	1 cut(s)	1246
BseMII	CTCAG	3 cut(s)	248, 471, 498
BseNI	ACTGG	2 cut(s)	642, 725
BseRI	GAGGAG	2 cut(s)	112, 1169
BseXI	GCAGC	4 cut(s)	193, 196, 259, 376
BshFI	GGCC	2 cut(s)	416, 916
BsiHKAI	GWGCWC	3 cut(s)	235, 448, 989
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	298, 1256
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	5 cut(s)	297, 345, 589, 695, 750
BsmAI	GTCTC	2 cut(s)	33, 788
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	416, 916
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	3 cut(s)	235, 448, 989
Bsp143I	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
Bsp1720I	GCTNAGC	2 cut(s)	234, 507
Bsp19I	CCATGG	1 cut(s)	749
BspANI	GGCC	2 cut(s)	416, 916
BspCNI	CTCAG	3 cut(s)	247, 470, 499
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	284, 1166
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	4 cut(s)	277, 290, 447, 600
BspQI	GCTCTTC	3 cut(s)	65, 282, 1264
BspTI	CTTAAG	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	1246
BsrI	ACTGG	2 cut(s)	642, 725
BssECI	CCNNGG	4 cut(s)	298, 749, 911, 1044
BssMI	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
BssT1I	CCWWGG	3 cut(s)	749, 911, 1044
Bst2UI	CCWGG	3 cut(s)	12, 531, 814
Bst4CI	ACNGT	4 cut(s)	134, 292, 538, 892
Bst6I	CTCTTC	5 cut(s)	65, 282, 765, 1106, 1264
BstAFI	CTTAAG	1 cut(s)	974
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	5 cut(s)	318, 387, 410, 414, 504
BstDEI	CTNAG	5 cut(s)	234, 340, 457, 507, 681
BstDSI	CCRYGG	1 cut(s)	749
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	115, 521, 741
BstKTI	GATC	6 cut(s)	196, 285, 455, 595, 635, 1246
BstMAI	GTCTC	2 cut(s)	33, 788
BstMBI	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
BstMWI	GCNNNNNNNGC	9 cut(s)	215, 317, 326, 335, 508, 677, 1074, 1209, 1280
BstNI	CCWGG	3 cut(s)	12, 531, 814
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	4 cut(s)	10, 297, 529, 812
BstSFI	CTRYAG	1 cut(s)	1023
BstV1I	GCAGC	4 cut(s)	193, 196, 259, 376
BstV2I	GAAGAC	1 cut(s)	893
BstX2I	RGATCY	2 cut(s)	282, 452
BstYI	RGATCY	2 cut(s)	282, 452
BsuI	GTATCC	1 cut(s)	1186
BsuRI	GGCC	2 cut(s)	416, 916
BtgI	CCRYGG	1 cut(s)	749
BtsCI	GGATG	3 cut(s)	115, 521, 741
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	2 cut(s)	543, 1032
Cac8I	GCNNGC	5 cut(s)	318, 387, 410, 414, 504
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	415, 775, 915
Csp6I	GTAC	3 cut(s)	6, 963, 1144
CviAII	CATG	6 cut(s)	197, 409, 636, 750, 1081, 1150
CviQI	GTAC	3 cut(s)	6, 963, 1144
DdeI	CTNAG	5 cut(s)	234, 340, 457, 507, 681
DpnI	GATC	6 cut(s)	195, 284, 454, 594, 634, 1245
DpnII	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
Eam1104I	CTCTTC	5 cut(s)	65, 282, 765, 1106, 1264
EarI	CTCTTC	5 cut(s)	65, 282, 765, 1106, 1264
Ecl136II	GAGCTC	2 cut(s)	233, 987
Eco130I	CCWWGG	3 cut(s)	749, 911, 1044
Eco24I	GRGCYC	2 cut(s)	235, 989
Eco47I	GGWCC	1 cut(s)	775
Eco53kI	GAGCTC	2 cut(s)	233, 987
Eco57I	CTGAAG	1 cut(s)	840
Eco88I	CYCGRG	1 cut(s)	435
EcoICRI	GAGCTC	2 cut(s)	233, 987
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoO109I	RGGNCCY	2 cut(s)	415, 915
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	3 cut(s)	10, 529, 812
EcoT14I	CCWWGG	3 cut(s)	749, 911, 1044
EcoT38I	GRGCYC	2 cut(s)	235, 989
ErhI	CCWWGG	3 cut(s)	749, 911, 1044
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	6 cut(s)	200, 412, 639, 753, 1084, 1153
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	6 cut(s)	196, 408, 635, 749, 1080, 1149
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	207, 210, 273, 390
FokI	GGATG	3 cut(s)	122, 528, 748
FriOI	GRGCYC	2 cut(s)	235, 989
Fsp4HI	GCNGC	4 cut(s)	207, 210, 273, 390
FspBI	CTAG	4 cut(s)	312, 695, 912, 1032
GluI	GCNGC	4 cut(s)	207, 210, 273, 390
HaeIII	GGCC	2 cut(s)	416, 916
HapII	CCGG	2 cut(s)	298, 1256
Hin1II	CATG	6 cut(s)	200, 412, 639, 753, 1084, 1153
HinfI	GANTC	8 cut(s)	176, 303, 375, 685, 799, 931, 1084, 1094
HpaII	CCGG	2 cut(s)	298, 1256
Hpy188I	TCNGA	8 cut(s)	109, 166, 282, 460, 712, 793, 936, 1219
Hpy188III	TCNNGA	2 cut(s)	197, 379
HpyAV	CCTTC	2 cut(s)	139, 1050
HpyCH4III	ACNGT	4 cut(s)	134, 292, 538, 892
HpyCH4IV	ACGT	1 cut(s)	472
HpyF10VI	GCNNNNNNNGC	9 cut(s)	215, 317, 326, 335, 508, 677, 1074, 1209, 1280
HpyF3I	CTNAG	5 cut(s)	234, 340, 457, 507, 681
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	6 cut(s)	200, 412, 639, 753, 1084, 1153
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
LguI	GCTCTTC	3 cut(s)	65, 282, 1264
LmnI	GCTCC	2 cut(s)	984, 1200
Lsp1109I	GCAGC	4 cut(s)	193, 196, 259, 376
LweI	GCATC	2 cut(s)	1022, 1212
MaeI	CTAG	4 cut(s)	312, 695, 912, 1032
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	394, 892
MalI	GATC	6 cut(s)	195, 284, 454, 594, 634, 1245
MboI	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	2 cut(s)	282, 452
MhlI	GDGCHC	3 cut(s)	235, 448, 989
MlyI	GAGTC	3 cut(s)	384, 694, 940
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	4 cut(s)	56, 498, 975, 1101
MslI	CAYNNNNRTG	1 cut(s)	403
MspCI	CTTAAG	1 cut(s)	974
MspI	CCGG	2 cut(s)	298, 1256
MspR9I	CCNGG	4 cut(s)	12, 299, 531, 814
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	3 cut(s)	12, 531, 814
MwoI	GCNNNNNNNGC	9 cut(s)	215, 317, 326, 335, 508, 677, 1074, 1209, 1280
NciI	CCSGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
NlaIII	CATG	6 cut(s)	200, 412, 639, 753, 1084, 1153
NlaIV	GGNNCC	2 cut(s)	284, 1166
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	1 cut(s)	412
PaeI	GCATGC	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	435
PagI	TCATGA	1 cut(s)	196
PciSI	GCTCTTC	3 cut(s)	65, 282, 1264
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	5 cut(s)	176, 303, 799, 1084, 1094
PflMI	CCANNNNNTGG	1 cut(s)	750
PfoI	TCCNGGA	3 cut(s)	10, 529, 812
PkrI	GCNGC	4 cut(s)	208, 211, 274, 391
PleI	GAGTC	3 cut(s)	383, 693, 939
PpsI	GAGTC	3 cut(s)	383, 693, 939
PsiI	TTATAA	1 cut(s)	807
Psp124BI	GAGCTC	2 cut(s)	235, 989
Psp6I	CCWGG	3 cut(s)	10, 529, 812
PspGI	CCWGG	3 cut(s)	10, 529, 812
PspN4I	GGNNCC	2 cut(s)	284, 1166
PspPI	GGNCC	3 cut(s)	415, 775, 915
PspXI	VCTCGAGB	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	282, 452
RsaI	GTAC	3 cut(s)	7, 964, 1145
RsaNI	GTAC	3 cut(s)	6, 963, 1144
RseI	CAYNNNNRTG	1 cut(s)	403
SacI	GAGCTC	2 cut(s)	235, 989
SapI	GCTCTTC	3 cut(s)	65, 282, 1264
SaqAI	TTAA	4 cut(s)	56, 498, 975, 1101
SatI	GCNGC	4 cut(s)	207, 210, 273, 390
Sau3AI	GATC	6 cut(s)	193, 282, 452, 592, 632, 1243
Sau96I	GGNCC	3 cut(s)	415, 775, 915
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	3 cut(s)	384, 694, 940
ScrFI	CCNGG	4 cut(s)	12, 299, 531, 814
SduI	GDGCHC	3 cut(s)	235, 448, 989
SfaNI	GCATC	2 cut(s)	1022, 1212
SfcI	CTRYAG	1 cut(s)	1023
Sfr274I	CTCGAG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	775
SlaI	CTCGAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	3 cut(s)	23, 435, 974
SmoI	CTYRAG	3 cut(s)	23, 435, 974
SphI	GCATGC	1 cut(s)	412
SspMI	CTAG	4 cut(s)	312, 695, 912, 1032
SstI	GAGCTC	2 cut(s)	235, 989
StyD4I	CCNGG	4 cut(s)	10, 297, 529, 812
StyI	CCWWGG	3 cut(s)	749, 911, 1044
TaaI	ACNGT	4 cut(s)	134, 292, 538, 892
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	7 cut(s)	125, 229, 424, 436, 442, 595, 995
TatI	WGTACW	1 cut(s)	962
TfiI	GAWTC	5 cut(s)	176, 303, 799, 1084, 1094
Tru1I	TTAA	4 cut(s)	56, 498, 975, 1101
Tru9I	TTAA	4 cut(s)	56, 498, 975, 1101
TscAI	CASTG	2 cut(s)	543, 1032
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	4 cut(s)	206, 209, 272, 389
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	6 cut(s)	93, 483, 936, 990, 1097, 1138
TspRI	CASTG	2 cut(s)	543, 1032
Van91I	CCANNNNNTGG	1 cut(s)	750
Vha464I	CTTAAG	1 cut(s)	974
VpaK11BI	GGWCC	1 cut(s)	775
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	865, 903
XceI	RCATGY	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	911
XspI	CTAG	4 cut(s)	312, 695, 912, 1032
ZrmI	AGTACT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.