Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8040258.1

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 358

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8040258.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 209 bp

atgcaggcacttgttcgagttcagactcgagttcgagcacagagatcctcagaagctgcacaagacttgctggatgaacgtcagtcccaagctgatgatcccgttaagcaggctgagcaaggatggtgtgatagtccaggaacagtgagtgaagttagagcaaagctacaaatgaggcaaagaggaaacataaagagggatcgagcaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

69

Amino Acids

7.85

Weight (kDa)

9.76

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	39, 92, 207
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	3 cut(s)	56, 92, 166
AluI	AGCT	3 cut(s)	56, 92, 166
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	39, 92, 207
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	57
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	79, 128
BseMII	CTCAG	2 cut(s)	63, 105
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	44, 97, 199
Bsp1720I	GCTNAGC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	62, 106
BspPI	GGATC	3 cut(s)	39, 92, 207
BssMI	GATC	3 cut(s)	44, 97, 199
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	6, 111
BstDEI	CTNAG	2 cut(s)	49, 114
BstF5I	GGATG	2 cut(s)	79, 128
BstKTI	GATC	3 cut(s)	47, 100, 202
BstMBI	GATC	3 cut(s)	44, 97, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	79, 128
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	6, 111
CaiI	CAGNNNCTG	1 cut(s)	56
CviJI	RGCY	4 cut(s)	56, 92, 113, 166
CviKI_1	RGCY	4 cut(s)	56, 92, 113, 166
DdeI	CTNAG	2 cut(s)	49, 114
DpnI	GATC	3 cut(s)	46, 99, 201
DpnII	GATC	3 cut(s)	44, 97, 199
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	136
FaiI	YATR	1 cut(s)	191
FaqI	GGGAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	86, 135
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	24, 52
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	4, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	49, 114
HpySE526I	ACGT	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	44, 97, 199
LpnPI	CCDG	4 cut(s)	56, 95, 123, 150
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	79
MalI	GATC	3 cut(s)	46, 99, 201
MboI	GATC	3 cut(s)	44, 97, 199
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	4 cut(s)	58, 168, 176, 189
MseI	TTAA	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	3 cut(s)	44, 97, 199
PaeR7I	CTCGAG	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	44, 97, 199
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	4 cut(s)	58, 82, 94, 168
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	4 cut(s)	16, 28, 34, 202
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.