Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

65814948 .. 65816541

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG454900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGACCAAGCCATGGGAAAATAGACTGATGGAGGAGGTCCAAACTGTGCCGTCAGAGATGAATCTTTATAATTCCAGGAAAAGTGGAGATGACATTGCTGGCTTTTATCCATGTTCTTCAGAACAGAACTCAGTGAAAGTGCGAAGGAATACTGTCACAACCAGGATTTCTGCTAGGCCATCTCAATCAATGAGTCCAATAACTCGCTCGTCTTCTACTCCAAGTTCTGATTTTCTAAGGGACGAGAGCTCGTCATCCACTTCATTTACTTCTGCTTCTCCTACTATAGCGTCTAGCAACGCTACCAAGGTAGAGGAAAGTAATATGTGCAAACCAAGCTACATGAATCTCACAGAGTCAATTAAGGCGAAGAAGAGAAGTTCCAATGGTCAAAATATGCAGAGGTATTTCATGGAGGAGTATCAGTTCCATAGCAAAGCTCTTTCTAATGGGGATACAAGGAGCATCAATGGAGGTTCTGATTTTTCGGTTAATTTCTGCAATGATCTATACCCTCCGGTATCATTGGGAAGAGCAGAAAGAGCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

185

Amino Acids

20.64

Weight (kDa)

9.01

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	77, 164
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	3 cut(s)	252, 342, 443
AluI	AGCT	3 cut(s)	252, 342, 443
Alw21I	GWGCWC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	254
BccI	CCATC	2 cut(s)	25, 190
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	79, 166
BciVI	GTATCC	1 cut(s)	451
BfaI	CTAG	2 cut(s)	177, 297
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	79, 166
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	79, 166
BmsI	GCATC	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	14, 309
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	96, 511
BseBI	CCWGG	2 cut(s)	79, 166
BseDI	CCNNGG	2 cut(s)	14, 309
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	2 cut(s)	96, 511
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	50, 434
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	508
Bsp19I	CCATGG	1 cut(s)	14
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	529
BsrDI	GCAATG	2 cut(s)	96, 511
BssECI	CCNNGG	2 cut(s)	14, 309
BssMI	GATC	1 cut(s)	508
BssT1I	CCWWGG	2 cut(s)	14, 309
Bst2UI	CCWGG	2 cut(s)	79, 166
Bst4CI	ACNGT	2 cut(s)	49, 157
Bst6I	CTCTTC	2 cut(s)	371, 529
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	133, 239
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 545
BstNI	CCWGG	2 cut(s)	79, 166
BstSCI	CCNGG	2 cut(s)	77, 164
BstSFI	CTRYAG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	282
CviAII	CATG	4 cut(s)	15, 114, 346, 415
CviJI	RGCY	6 cut(s)	13, 105, 181, 252, 342, 443
CviKI_1	RGCY	6 cut(s)	13, 105, 181, 252, 342, 443
DdeI	CTNAG	2 cut(s)	133, 239
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	371, 529
EarI	CTCTTC	2 cut(s)	371, 529
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	14, 309
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	77, 164
EcoT14I	CCWWGG	2 cut(s)	14, 309
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	2 cut(s)	14, 309
FaeI	CATG	4 cut(s)	18, 117, 349, 418
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	14, 113, 345, 414
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	177, 297
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	18, 117, 349, 418
HinfI	GANTC	4 cut(s)	64, 196, 349, 359
HpaII	CCGG	1 cut(s)	521
Hpy188I	TCNGA	4 cut(s)	58, 124, 232, 484
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	49, 157
HpyCH4V	TGCA	3 cut(s)	333, 403, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 545
HpyF3I	CTNAG	2 cut(s)	133, 239
Hsp92II	CATG	4 cut(s)	18, 117, 349, 418
Kzo9I	GATC	1 cut(s)	508
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	6 cut(s)	64, 87, 91, 151, 178, 534
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	177, 297
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	5 cut(s)	111, 207, 385, 388, 546
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	3 cut(s)	73, 363, 496
MlyI	GAGTC	2 cut(s)	205, 368
MnlI	CCTC	7 cut(s)	28, 31, 310, 399, 412, 470, 528
MseI	TTAA	2 cut(s)	366, 495
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	79, 166
MvaI	CCWGG	2 cut(s)	79, 166
MwoI	GCNNNNNNNGC	2 cut(s)	339, 545
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	4 cut(s)	18, 117, 349, 418
NmuCI	GTSAC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	64, 349
PflMI	CCANNNNNTGG	1 cut(s)	15
PfoI	TCCNGGA	1 cut(s)	77
PleI	GAGTC	2 cut(s)	204, 367
PpsI	GAGTC	2 cut(s)	204, 367
PsiI	TTATAA	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	77, 164
PspGI	CCWGG	2 cut(s)	77, 164
PspPI	GGNCC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	366, 495
Sau3AI	GATC	1 cut(s)	508
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	205, 368
ScrFI	CCNGG	2 cut(s)	79, 166
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	7 cut(s)	42, 254, 315, 344, 410, 445, 481
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	73, 363, 496
SspMI	CTAG	2 cut(s)	177, 297
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	77, 164
StyI	CCWWGG	2 cut(s)	14, 309
TaaI	ACNGT	2 cut(s)	49, 157
TasI	AATT	3 cut(s)	73, 363, 496
TfiI	GAWTC	2 cut(s)	64, 349
Tru1I	TTAA	2 cut(s)	366, 495
Tru9I	TTAA	2 cut(s)	366, 495
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	4 cut(s)	77, 255, 362, 403
TspRI	CASTG	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	40
XspI	CTAG	2 cut(s)	177, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.