AT1G72670

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008312
Physical Location & Seq
Reverse (-)
27356459 .. 27358863
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72670.1

Sequence Viewer

Length: 1245 bp
ATGGGTGGCTCTGGAAATTGGATTAAATCTCTGATAACTAACAAAAAAAACATCACTGATGATCAAGAGAAGAACATCAAGAAGAAATGGAAACTATGGAGGACTTCATCGGAAGGTTTGATTTCTTCCTCAAAGGGTTTCAAGAGCCGTGGTGGTAGTTATGGAACTCCTTCGTTAGGCTCAGATCCGCCGTCATTCTCTGCTGACGACTCTTTCACGGCGGCTGTTGCTGCTGTCATTAGAGCTCCGCCGAAAGATTTCTTTCTTGTTAAACGTGAATGGGCTGCTACACGGATTCAAGCTGCTTTTCGAGCTTTCCTGGCAAGACAAGCGCTGAGAGCTCTGAAGGCCGTAGTGAGGATTCAGGCAATATTCCGTGGGAGACAAGTCCGGAAACAAGCAGATGTCACCCTAAGGTGTATGCAAGCTCTTGTACGAGTCCAAGCTCGGGTACGAGCTCATTGTAACAGGGGGCCTTCAGATGGACAGGAGTTGGAGAAGCCATCTGATCAACAAAAAGATGATCCGGCAAAACAGGCTGAGAAGGGTTGGTGTGATAGCCCGGGAAGTATCAATGAAGTGAGAACGAAGCTACAAATGAGGCAAGAAGGAGCAATCAAGAGGGAGAGAGCTATGGTATATGCATTGACACATCAGCCGAGGACATGTCCAAGTCCGGCCAAGGCGAGCAAGCAAGGGAGTGTCAAAAAGAATAATGGGTCGTGTAAGAGCAGTCCAGGTTGGAATTGGCTTGACCGATGGGTTGCAGACAGGCCATGGGAAGGTCGGTTGATGGAAGGTCCTACAAACTCATCAGAAAATGCAAGGAAAAGCGAGAGCAGTGTGTCTGAACATGATACGGTTCAGGTCAGGAAGAACAATCTCACAACCAGAGTTTTGGCTAGACCTCCTCCAATGTCATCGTCTGCTACGAGTTCTGAGTCTTCATCGACTTCTCAATCCCCAGTTCCCTTCTCGGGAAGTTTCCTTGAGGAAGGAGGGTACTACAGAAAGCCTAGCTACATGAGCCTCACACAATCTATTAAAGCTAAGCAGAGACGATCAGGGTCTTCGTCCTCTTGTTCCAAAACACCGTTTGAAAAGAAACAGTCAATGTCTTACAACGGAGATGTAAATGTAAGGCGTAGTGCTGGTTCGGATCCGTTGAACAACCAGTGGACTGATCTATACCCACCAGCTCAAGTAACAGGAAGACATATGTGGGCAAAGAGCCAGAGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

414

Amino Acids

45.89

Weight (kDa)

10.27

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 3 cut(s) 188, 221, 248
AclWI GGATC 4 cut(s) 179, 518, 1154, 1167
AcoI YGGCCR 1 cut(s) 678
AcuI CTGAAG 2 cut(s) 365, 462
AfaI GTAC 3 cut(s) 435, 453, 1004
AfeI AGCGCT 1 cut(s) 333
AfiI CCNNNNNNNGG 6 cut(s) 176, 357, 448, 482, 782, 977
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 4 cut(s) 142, 299, 1100, 1168
AjnI CCWGG 2 cut(s) 318, 736
Alw21I GWGCWC 3 cut(s) 247, 343, 460
Alw26I GTCTC 2 cut(s) 376, 1051
AlwI GGATC 4 cut(s) 179, 518, 1154, 1167
Ama87I CYCGRG 3 cut(s) 447, 562, 976
Aor13HI TCCGGA 1 cut(s) 390
Aor51HI AGCGCT 1 cut(s) 333
AoxI GGCC 4 cut(s) 348, 473, 678, 773
ApeKI GCWGC 3 cut(s) 230, 284, 302
Asp700I GAANNNNTTC 2 cut(s) 169, 257
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 473, 800
AsuC2I CCSGG 2 cut(s) 563, 564
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 3 cut(s) 447, 562, 976
AvaII GGWCC 1 cut(s) 800
AxyI CCTNAGG 1 cut(s) 413
BamHI GGATCC 1 cut(s) 1159
BanII GRGCYC 3 cut(s) 247, 343, 460
BbsI GAAGAC 3 cut(s) 936, 1062, 1219
Bbv12I GWGCWC 3 cut(s) 247, 343, 460
BbvI GCAGC 3 cut(s) 217, 271, 289
BccI CCATC 4 cut(s) 476, 511, 753, 787
BceAI ACGGC 4 cut(s) 132, 175, 234, 335
BciT130I CCWGG 2 cut(s) 320, 738
BclI TGATCA 2 cut(s) 61, 508
BcnI CCSGG 2 cut(s) 563, 564
BcoDI GTCTC 2 cut(s) 376, 1051
BfaI CTAG 2 cut(s) 903, 1017
BfmI CTRYAG 1 cut(s) 1006
BfoI RGCGCY 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 1239
BisI GCNGC 4 cut(s) 222, 231, 285, 303
BlpI GCTNAGC 1 cut(s) 1050
BlsI GCNGC 4 cut(s) 223, 232, 286, 304
Bme1390I CCNGG 4 cut(s) 320, 563, 564, 738
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 3 cut(s) 447, 562, 976
BmgT120I GGNCC 2 cut(s) 473, 800
BmiI GGNNCC 2 cut(s) 474, 1161
BmrFI CCNGG 4 cut(s) 320, 563, 564, 738
BmrI ACTGGG 1 cut(s) 959
BmuI ACTGGG 1 cut(s) 959
BpiI GAAGAC 3 cut(s) 936, 1062, 1219
Bpu1102I GCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 1010, 1185
BpuMI CCSGG 2 cut(s) 563, 564
BsaJI CCNNGG 6 cut(s) 148, 376, 562, 659, 681, 776
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 357, 448, 482, 782, 977
Bse1I ACTGG 2 cut(s) 965, 1174
Bse21I CCTNAGG 1 cut(s) 413
BseAI TCCGGA 1 cut(s) 390
BseBI CCWGG 2 cut(s) 320, 738
BseDI CCNNGG 6 cut(s) 148, 376, 562, 659, 681, 776
BseLI CCNNNNNNNGG 6 cut(s) 176, 357, 448, 482, 782, 977
BseMII CTCAG 4 cut(s) 195, 326, 531, 930
BseNI ACTGG 2 cut(s) 965, 1174
BseRI GAGGAG 1 cut(s) 900
BseXI GCAGC 3 cut(s) 217, 271, 289
BshFI GGCC 4 cut(s) 350, 475, 680, 775
BsiHKAI GWGCWC 3 cut(s) 247, 343, 460
BsiHKCI CYCGRG 3 cut(s) 447, 562, 976
BsiSI CCGG 4 cut(s) 391, 527, 563, 677
BslI CCNNNNNNNGG 6 cut(s) 176, 357, 448, 482, 782, 977
BsmAI GTCTC 2 cut(s) 376, 1051
BsmBI CGTCTC 1 cut(s) 1051
BsnI GGCC 4 cut(s) 350, 475, 680, 775
BsoBI CYCGRG 3 cut(s) 447, 562, 976
Bsp1286I GDGCHC 3 cut(s) 247, 343, 460
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
Bsp1720I GCTNAGC 1 cut(s) 1050
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 3 cut(s) 188, 221, 248
BspANI GGCC 4 cut(s) 350, 475, 680, 775
BspCNI CTCAG 4 cut(s) 194, 327, 532, 931
BspEI TCCGGA 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 474, 1161
BspPI GGATC 4 cut(s) 179, 518, 1154, 1167
BsrI ACTGG 2 cut(s) 965, 1174
BssECI CCNNGG 6 cut(s) 148, 376, 562, 659, 681, 776
BssMI GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
BssT1I CCWWGG 2 cut(s) 681, 776
Bst2UI CCWGG 2 cut(s) 320, 738
Bst4CI ACNGT 3 cut(s) 862, 1095, 1110
BstC8I GCNNGC 3 cut(s) 426, 688, 692
BstDEI CTNAG 6 cut(s) 181, 335, 413, 540, 939, 1050
BstDSI CCRYGG 3 cut(s) 148, 376, 776
BstENI CCTNNNNNAGG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 7 cut(s) 64, 187, 511, 526, 1064, 1162, 1186
BstMAI GTCTC 2 cut(s) 376, 1051
BstMBI GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
BstNI CCWGG 2 cut(s) 320, 738
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 4 cut(s) 318, 561, 562, 736
BstSFI CTRYAG 1 cut(s) 1006
BstV1I GCAGC 3 cut(s) 217, 271, 289
BstV2I GAAGAC 3 cut(s) 936, 1062, 1219
BstX2I RGATCY 2 cut(s) 184, 1159
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 2 cut(s) 184, 1159
Bsu36I CCTNAGG 1 cut(s) 413
BsuRI GGCC 4 cut(s) 350, 475, 680, 775
BtgI CCRYGG 3 cut(s) 148, 376, 776
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 3 cut(s) 54, 847, 1181
Cac8I GCNNGC 3 cut(s) 426, 688, 692
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 473, 800
Cfr9I CCCGGG 1 cut(s) 562
Csp6I GTAC 3 cut(s) 434, 452, 1003
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 4 cut(s) 666, 777, 854, 1024
CviQI GTAC 3 cut(s) 434, 452, 1003
DdeI CTNAG 6 cut(s) 181, 335, 413, 540, 939, 1050
DpnI GATC 7 cut(s) 63, 186, 510, 525, 1063, 1161, 1185
DpnII GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
EaeI YGGCCR 1 cut(s) 678
EciI GGCGGA 2 cut(s) 177, 237
Ecl136II GAGCTC 3 cut(s) 245, 341, 458
Eco130I CCWWGG 2 cut(s) 681, 776
Eco24I GRGCYC 3 cut(s) 247, 343, 460
Eco47I GGWCC 1 cut(s) 800
Eco47III AGCGCT 1 cut(s) 333
Eco53kI GAGCTC 3 cut(s) 245, 341, 458
Eco57I CTGAAG 2 cut(s) 365, 462
Eco81I CCTNAGG 1 cut(s) 413
Eco88I CYCGRG 3 cut(s) 447, 562, 976
EcoICRI GAGCTC 3 cut(s) 245, 341, 458
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoO109I RGGNCCY 2 cut(s) 473, 800
EcoRII CCWGG 2 cut(s) 318, 736
EcoT14I CCWWGG 2 cut(s) 681, 776
EcoT22I ATGCAT 1 cut(s) 646
EcoT38I GRGCYC 3 cut(s) 247, 343, 460
ErhI CCWWGG 2 cut(s) 681, 776
Esp3I CGTCTC 1 cut(s) 1051
FaeI CATG 4 cut(s) 669, 780, 857, 1027
FatI CATG 4 cut(s) 665, 776, 853, 1023
FauNDI CATATG 1 cut(s) 1218
FbaI TGATCA 2 cut(s) 61, 508
Fnu4HI GCNGC 4 cut(s) 222, 231, 285, 303
FriOI GRGCYC 3 cut(s) 247, 343, 460
Fsp4HI GCNGC 4 cut(s) 222, 231, 285, 303
FspBI CTAG 2 cut(s) 903, 1017
GlaI GCGC 1 cut(s) 333
GluI GCNGC 4 cut(s) 222, 231, 285, 303
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 4 cut(s) 350, 475, 680, 775
HapII CCGG 4 cut(s) 391, 527, 563, 677
HhaI GCGC 1 cut(s) 334
Hin1II CATG 4 cut(s) 669, 780, 857, 1027
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 5 cut(s) 209, 295, 361, 438, 941
HpaII CCGG 4 cut(s) 391, 527, 563, 677
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 1179
Hpy188III TCNNGA 8 cut(s) 12, 65, 79, 142, 391, 619, 871, 978
Hpy8I GTNNAC 1 cut(s) 1179
HpyCH4III ACNGT 3 cut(s) 862, 1095, 1110
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 424, 644, 767, 824
HpyF3I CTNAG 6 cut(s) 181, 335, 413, 540, 939, 1050
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 4 cut(s) 669, 780, 857, 1027
HspAI GCGC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 390
Ksp22I TGATCA 2 cut(s) 61, 508
Kzo9I GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
LmnI GCTCC 2 cut(s) 250, 611
Lsp1109I GCAGC 3 cut(s) 217, 271, 289
MaeI CTAG 2 cut(s) 903, 1017
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 3 cut(s) 406, 464, 1204
MalI GATC 7 cut(s) 63, 186, 510, 525, 1063, 1161, 1185
MboI GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
MboII GAAGA 7 cut(s) 82, 94, 117, 886, 936, 1062, 1224
MflI RGATCY 2 cut(s) 184, 1159
MhlI GDGCHC 3 cut(s) 247, 343, 460
MluCI AATT 2 cut(s) 16, 745
MlyI GAGTC 3 cut(s) 203, 447, 950
MmeI TCCRAC 2 cut(s) 474, 722
Mph1103I ATGCAT 1 cut(s) 646
MroI TCCGGA 1 cut(s) 390
MroXI GAANNNNTTC 2 cut(s) 169, 257
MseI TTAA 3 cut(s) 24, 270, 1044
MspI CCGG 4 cut(s) 391, 527, 563, 677
MspR9I CCNGG 4 cut(s) 320, 563, 564, 738
MvaI CCWGG 2 cut(s) 320, 738
NciI CCSGG 2 cut(s) 563, 564
NcoI CCATGG 1 cut(s) 776
NdeI CATATG 1 cut(s) 1218
NdeII GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
NlaIII CATG 4 cut(s) 669, 780, 857, 1027
NlaIV GGNNCC 2 cut(s) 474, 1161
NmeAIII GCCGAG 1 cut(s) 684
NmuCI GTSAC 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 669
PciI ACATGT 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PdmI GAANNNNTTC 2 cut(s) 169, 257
PfeI GAWTC 2 cut(s) 295, 361
PkrI GCNGC 4 cut(s) 223, 232, 286, 304
PleI GAGTC 3 cut(s) 203, 446, 949
PpsI GAGTC 3 cut(s) 203, 446, 949
PpuMI RGGWCCY 1 cut(s) 800
PscI ACATGT 1 cut(s) 665
Psp124BI GAGCTC 3 cut(s) 247, 343, 460
Psp5II RGGWCCY 1 cut(s) 800
Psp6I CCWGG 2 cut(s) 318, 736
PspGI CCWGG 2 cut(s) 318, 736
PspN4I GGNNCC 2 cut(s) 474, 1161
PspPI GGNCC 2 cut(s) 473, 800
PspPPI RGGWCCY 1 cut(s) 800
PsrI GAACNNNNNNTAC 2 cut(s) 1138, 1170
PsuI RGATCY 2 cut(s) 184, 1159
RsaI GTAC 3 cut(s) 435, 453, 1004
RsaNI GTAC 3 cut(s) 434, 452, 1003
SacI GAGCTC 3 cut(s) 247, 343, 460
SaqAI TTAA 3 cut(s) 24, 270, 1044
SatI GCNGC 4 cut(s) 222, 231, 285, 303
Sau3AI GATC 7 cut(s) 61, 184, 508, 523, 1061, 1159, 1183
Sau96I GGNCC 2 cut(s) 473, 800
SchI GAGTC 3 cut(s) 203, 447, 950
ScrFI CCNGG 4 cut(s) 320, 563, 564, 738
SduI GDGCHC 3 cut(s) 247, 343, 460
SfcI CTRYAG 1 cut(s) 1006
SinI GGWCC 1 cut(s) 800
SmaI CCCGGG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 989, 1200
SmoI CTYRAG 2 cut(s) 989, 1200
Sse9I AATT 2 cut(s) 16, 745
SsiI CCGC 3 cut(s) 188, 221, 248
SspI AATATT 1 cut(s) 372
SspMI CTAG 2 cut(s) 903, 1017
SstI GAGCTC 3 cut(s) 247, 343, 460
StyD4I CCNGG 4 cut(s) 318, 561, 562, 736
StyI CCWWGG 2 cut(s) 681, 776
TaaI ACNGT 3 cut(s) 862, 1095, 1110
TaiI ACGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 310, 950
TaqII GACCGA 1 cut(s) 771
TasI AATT 2 cut(s) 16, 745
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 295, 361
Tru1I TTAA 3 cut(s) 24, 270, 1044
Tru9I TTAA 3 cut(s) 24, 270, 1044
TscAI CASTG 3 cut(s) 61, 847, 1181
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 3 cut(s) 230, 284, 302
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 96, 591, 936
TspGWI ACGGA 4 cut(s) 307, 365, 1140, 1152
TspMI CCCGGG 1 cut(s) 562
TspRI CASTG 3 cut(s) 61, 847, 1181
VpaK11BI GGWCC 1 cut(s) 800
XagI CCTNNNNNAGG 1 cut(s) 174
XceI RCATGY 1 cut(s) 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XmaI CCCGGG 1 cut(s) 562
XmnI GAANNNNTTC 2 cut(s) 169, 257
XspI CTAG 2 cut(s) 903, 1017
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.