Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008312

Physical Location & Seq

Genomic Coordinates Reverse (-)

57757315 .. 57760519

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG423300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGGTACTCCAGGAAAATGGTTCAAGTCCCTCATCAATCCCAAAAAGCCCATAACAACTGACCAAGAGAAGGGCAAGAAGAAATGGAAGCTATGGAGGAGTTCATCGGATGGGTTAGGATCTACTAGTAAAGGTGGTGTGAAGAAGGTGGAGGGTTCAGAGCTGTTGGATTTTGCAAATGTAGTCGATCATGAGTTGGCTGCTGCCATGGCTACTCTGCTTCGGGCTCAGCCTAAAGATTTCAAGATAGTCAAGCGAGAGTGGGCTGCTATTCGGATCCAAACCGTGTTTCGGGGATTCTTGGCAAGGCAGGCTTTAAGGGCCTTGAAAGCATTAGTAAGGCTTCAAGCTATATTTCGTGGGAGGCGGGTCAGGAAGCAAGCAGCTGTTACATTGAGGTGCATGCAGGCACTTGTTCGAGTTCAGACTCGAGTTCGAGCACAGAGATCCTCAGAAGCTGCACAAGACTTGCTGGATGAACGTCAGTCCCAAGCTGATGATCCCGTTAAGCAGGCTGAGCAAGGATGGTGTGATAGTCCAGGAACAGTGAGTGAAGTTAGAGCAAAGCTACAAATGAGGCAAAGAGGAAACATAAAGAGGGATCGAGCAATTGCATATTCCCTCTCTCAACAGAGGCCAAGATCATGTTCCAGTCCATATAGCAGGACTAACAAGACAGCAAAGGTTACTAAGAGTCCAAGAGTAGGCAATAACAATTCTGAATGGAACTGGTTAGAAAATTGGATGGCGACCAAGCCATGGGAAAATAGACTGATGGAGGAGGTCCAAACTGTGCCATCAGAGATGAATCTTTATAATTCCAGGAAAAGTGGAGATGACATTGCTGGCTTTTATCCATGTTCTTCAGAACAGAACTCAGTGAAAGTGCGAAGGAATACTGTCGCAACCAGGATTTCTGCTAGGCCATCTCAATCAATGAGTCCAATAACTCGCTCGTCTTCTCAATCAATGAGTCCAATAACTCGCTCGTCTTCTACTCCAAGTTCTGATTTTCTAAGGGACGAGAGCTCGTCATCCACTTCATTTACTTCTGCATCTCCTACTATAGCGCCTAGCAACGCTACCAAGGTAGAGGAAAGTAATATGTGCAAACCAAGCTACATGAATCTCACAGAGTCAATTAAGGCGAAGAAGAGAAGTTCCAATGGTCAAAATATGCAGAGGTATTTCATGGAGGAGTATCAGTTCCATAGCAAAGCTCTTTCTAATGGGGATACAAGGAGCATCAATGGAGGTTCTGATTTTTCGGTTAATTTCTGCAATGATCTATACCCTCCGGTATCGTTGGGAAGAGCAGAAAGAGCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

444

Amino Acids

49.9

Weight (kDa)

10.22

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17480 AT1G72670
fragaria_vesca	FvH4_6g33840 FvH4_6g33840 FvH4_6g33840
malus_domestica	MD09G1190900.v1.1
prunus_persica	Prupe.3G046800_v2.0.a1
pyrus_communis	pycom07g10300 pycom09g10730
rosa_chinensis	RchiOBHm_Chr2g0143711
rosa_laevigata	RLG00000020061
rosa_multiflora	Rmu_co8040258.1_g000001 Rmu_co8367643.1_g000001 Rmu_sc0004340.1_g000004 Rmu_sc0032474.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101520
rosa_rugosa	Rorug02G0384600
rosa_samantha	Rh2AG437100 Rh2BG444600 Rh2CG423300 Rh2DG454900 Rh2DG455000
rosa_wichuraiana	Rw2G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	759
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 609
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	70, 291, 704, 759
AgsI	TTSAA	4 cut(s)	25, 244, 328, 347
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	4 cut(s)	10, 538, 821, 908
AjuI	GAANNNNNNNTTGG	4 cut(s)	273, 305, 631, 663
AloI	GAACNNNNNNTCC	2 cut(s)	1190, 1222
Alw21I	GWGCWC	2 cut(s)	442, 1031
AlwI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 609
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	3 cut(s)	321, 635, 923
ApeKI	GCWGC	5 cut(s)	200, 203, 266, 383, 458
AspLEI	GCGC	1 cut(s)	1072
AspS9I	GGNCC	2 cut(s)	321, 784
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	784
BamHI	GGATCC	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	229, 1031
BbsI	GAAGAC	2 cut(s)	951, 984
Bbv12I	GWGCWC	2 cut(s)	442, 1031
BbvI	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BccI	CCATC	6 cut(s)	104, 519, 739, 769, 805, 934
BciT130I	CCWGG	4 cut(s)	12, 540, 823, 910
BciVI	GTATCC	1 cut(s)	1228
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	3 cut(s)	126, 921, 1074
BfmI	CTRYAG	1 cut(s)	1065
BfoI	RGCGCY	1 cut(s)	1073
BfuI	GTATCC	1 cut(s)	1228
BisI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
BlpI	GCTNAGC	2 cut(s)	228, 516
BlsI	GCNGC	5 cut(s)	202, 205, 268, 385, 460
Bme1390I	CCNGG	4 cut(s)	12, 540, 823, 910
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	321, 784
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	4 cut(s)	12, 540, 823, 910
BmsI	GCATC	2 cut(s)	1064, 1254
BpiI	GAAGAC	2 cut(s)	951, 984
Bpu1102I	GCTNAGC	2 cut(s)	228, 516
BsaJI	CCNNGG	3 cut(s)	207, 758, 1086
BsaWI	WCCGGW	1 cut(s)	1297
BsaXI	ACNNNNNCTCC	2 cut(s)	1190, 1220
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 291, 704, 759
Bse1I	ACTGG	2 cut(s)	651, 734
Bse3DI	GCAATG	2 cut(s)	840, 1288
BseBI	CCWGG	4 cut(s)	12, 540, 823, 910
BseDI	CCNNGG	3 cut(s)	207, 758, 1086
BseGI	GGATG	5 cut(s)	115, 481, 530, 750, 1034
BseLI	CCNNNNNNNGG	4 cut(s)	70, 291, 704, 759
BseMI	GCAATG	2 cut(s)	840, 1288
BseMII	CTCAG	4 cut(s)	242, 465, 507, 891
BseNI	ACTGG	2 cut(s)	651, 734
BseRI	GAGGAG	3 cut(s)	112, 794, 1211
BseXI	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	323, 637, 925
BsiHKAI	GWGCWC	2 cut(s)	442, 1031
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	1298
BslFI	GGGAC	3 cut(s)	13, 472, 1034
BslI	CCNNNNNNNGG	4 cut(s)	70, 291, 704, 759
BsmFI	GGGAC	3 cut(s)	13, 472, 1034
BsnI	GGCC	3 cut(s)	323, 637, 925
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	3 cut(s)	229, 442, 1031
Bsp143I	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
Bsp1720I	GCTNAGC	2 cut(s)	228, 516
Bsp19I	CCATGG	2 cut(s)	207, 758
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	323, 637, 925
BspCNI	CTCAG	4 cut(s)	241, 464, 508, 890
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	278
BspPI	GGATC	6 cut(s)	127, 271, 284, 441, 494, 609
BspQI	GCTCTTC	1 cut(s)	1306
BsrDI	GCAATG	2 cut(s)	840, 1288
BsrI	ACTGG	2 cut(s)	651, 734
BssECI	CCNNGG	3 cut(s)	207, 758, 1086
BssMI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
BssT1I	CCWWGG	3 cut(s)	207, 758, 1086
Bst2UI	CCWGG	4 cut(s)	12, 540, 823, 910
Bst4CI	ACNGT	4 cut(s)	286, 547, 793, 901
Bst6I	CTCTTC	2 cut(s)	1148, 1306
BstC8I	GCNNGC	6 cut(s)	312, 381, 404, 408, 513, 847
BstDEI	CTNAG	6 cut(s)	228, 451, 516, 690, 877, 1016
BstDSI	CCRYGG	2 cut(s)	207, 758
BstF5I	GGATG	5 cut(s)	115, 481, 530, 750, 1034
BstH2I	RGCGCY	1 cut(s)	1073
BstHHI	GCGC	1 cut(s)	1072
BstKTI	GATC	8 cut(s)	122, 190, 279, 449, 502, 604, 644, 1288
BstMBI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
BstMWI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1116, 1322
BstNI	CCWGG	4 cut(s)	12, 540, 823, 910
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	4 cut(s)	10, 538, 821, 908
BstSFI	CTRYAG	1 cut(s)	1065
BstV1I	GCAGC	5 cut(s)	187, 190, 253, 395, 445
BstV2I	GAAGAC	2 cut(s)	951, 984
BstX2I	RGATCY	3 cut(s)	119, 276, 446
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	3 cut(s)	119, 276, 446
BsuI	GTATCC	1 cut(s)	1228
BsuRI	GGCC	3 cut(s)	323, 637, 925
BtgI	CCRYGG	2 cut(s)	207, 758
BtsCI	GGATG	5 cut(s)	115, 481, 530, 750, 1034
BtsIMutI	CAGTG	2 cut(s)	552, 885
Cac8I	GCNNGC	6 cut(s)	312, 381, 404, 408, 513, 847
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	1072
Cfr13I	GGNCC	2 cut(s)	321, 784
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	8 cut(s)	191, 208, 403, 645, 759, 858, 1123, 1192
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	6 cut(s)	228, 451, 516, 690, 877, 1016
DpnI	GATC	8 cut(s)	121, 189, 278, 448, 501, 603, 643, 1287
DpnII	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
Eam1104I	CTCTTC	2 cut(s)	1148, 1306
EarI	CTCTTC	2 cut(s)	1148, 1306
Ecl136II	GAGCTC	1 cut(s)	1029
Eco130I	CCWWGG	3 cut(s)	207, 758, 1086
Eco24I	GRGCYC	2 cut(s)	229, 1031
Eco47I	GGWCC	1 cut(s)	784
Eco53kI	GAGCTC	1 cut(s)	1029
Eco57I	CTGAAG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	1029
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	4 cut(s)	10, 538, 821, 908
EcoT14I	CCWWGG	3 cut(s)	207, 758, 1086
EcoT38I	GRGCYC	2 cut(s)	229, 1031
ErhI	CCWWGG	3 cut(s)	207, 758, 1086
FaeI	CATG	8 cut(s)	194, 211, 406, 648, 762, 861, 1126, 1195
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	3 cut(s)	13, 472, 1034
FatI	CATG	8 cut(s)	190, 207, 402, 644, 758, 857, 1122, 1191
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
FokI	GGATG	5 cut(s)	122, 488, 537, 757, 1021
FriOI	GRGCYC	2 cut(s)	229, 1031
Fsp4HI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
FspBI	CTAG	3 cut(s)	126, 921, 1074
GlaI	GCGC	1 cut(s)	1071
GluI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
HaeII	RGCGCY	1 cut(s)	1073
HaeIII	GGCC	3 cut(s)	323, 637, 925
HapII	CCGG	1 cut(s)	1298
HhaI	GCGC	1 cut(s)	1072
Hin1II	CATG	8 cut(s)	194, 211, 406, 648, 762, 861, 1126, 1195
Hin6I	GCGC	1 cut(s)	1070
HinP1I	GCGC	1 cut(s)	1070
HinfI	GANTC	8 cut(s)	297, 427, 694, 808, 940, 973, 1126, 1136
HpaII	CCGG	1 cut(s)	1298
Hpy188III	TCNNGA	3 cut(s)	191, 244, 373
HpyAV	CCTTC	3 cut(s)	64, 139, 885
HpyCH4III	ACNGT	4 cut(s)	286, 547, 793, 901
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	9 cut(s)	176, 402, 406, 461, 614, 1055, 1110, 1180, 1281
HpyF10VI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1116, 1322
HpyF3I	CTNAG	6 cut(s)	228, 451, 516, 690, 877, 1016
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	8 cut(s)	194, 211, 406, 648, 762, 861, 1126, 1195
HspAI	GCGC	1 cut(s)	1070
Kzo9I	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
LguI	GCTCTTC	1 cut(s)	1306
LmnI	GCTCC	1 cut(s)	1242
Lsp1109I	GCAGC	5 cut(s)	187, 190, 253, 395, 445
LweI	GCATC	2 cut(s)	1064, 1254
MaeI	CTAG	3 cut(s)	126, 921, 1074
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	2 cut(s)	388, 685
MalI	GATC	8 cut(s)	121, 189, 278, 448, 501, 603, 643, 1287
MboI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
MboII	GAAGA	8 cut(s)	91, 154, 855, 951, 984, 1162, 1165, 1323
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	3 cut(s)	119, 276, 446
MhlI	GDGCHC	3 cut(s)	229, 442, 1031
MluCI	AATT	6 cut(s)	609, 715, 739, 817, 1140, 1273
MlyI	GAGTC	5 cut(s)	421, 703, 949, 982, 1145
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	4 cut(s)	317, 507, 1143, 1272
MslI	CAYNNNNRTG	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	1298
MspR9I	CCNGG	4 cut(s)	12, 540, 823, 910
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	4 cut(s)	12, 540, 823, 910
MwoI	GCNNNNNNNGC	7 cut(s)	209, 311, 320, 329, 517, 1116, 1322
NcoI	CCATGG	2 cut(s)	207, 758
NdeII	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
NlaIII	CATG	8 cut(s)	194, 211, 406, 648, 762, 861, 1126, 1195
NlaIV	GGNNCC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	1306
PfeI	GAWTC	3 cut(s)	297, 808, 1126
PflMI	CCANNNNNTGG	1 cut(s)	759
PfoI	TCCNGGA	3 cut(s)	10, 538, 821
PkrI	GCNGC	5 cut(s)	202, 205, 268, 385, 460
PleI	GAGTC	5 cut(s)	421, 702, 948, 981, 1144
PpsI	GAGTC	5 cut(s)	421, 702, 948, 981, 1144
PsiI	TTATAA	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	1031
Psp6I	CCWGG	4 cut(s)	10, 538, 821, 908
PspGI	CCWGG	4 cut(s)	10, 538, 821, 908
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	321, 784
PspXI	VCTCGAGB	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	119, 276, 446
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	1031
SapI	GCTCTTC	1 cut(s)	1306
SaqAI	TTAA	4 cut(s)	317, 507, 1143, 1272
SatI	GCNGC	5 cut(s)	201, 204, 267, 384, 459
Sau3AI	GATC	8 cut(s)	119, 187, 276, 446, 499, 601, 641, 1285
Sau96I	GGNCC	2 cut(s)	321, 784
SchI	GAGTC	5 cut(s)	421, 703, 949, 982, 1145
ScrFI	CCNGG	4 cut(s)	12, 540, 823, 910
SduI	GDGCHC	3 cut(s)	229, 442, 1031
SfaNI	GCATC	2 cut(s)	1064, 1254
SfcI	CTRYAG	1 cut(s)	1065
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	784
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SpeI	ACTAGT	1 cut(s)	125
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	6 cut(s)	609, 715, 739, 817, 1140, 1273
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	3 cut(s)	126, 921, 1074
SstI	GAGCTC	1 cut(s)	1031
StyD4I	CCNGG	4 cut(s)	10, 538, 821, 908
StyI	CCWWGG	3 cut(s)	207, 758, 1086
TaaI	ACNGT	4 cut(s)	286, 547, 793, 901
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	5 cut(s)	186, 418, 430, 436, 604
TasI	AATT	6 cut(s)	609, 715, 739, 817, 1140, 1273
TfiI	GAWTC	3 cut(s)	297, 808, 1126
Tru1I	TTAA	4 cut(s)	317, 507, 1143, 1272
Tru9I	TTAA	4 cut(s)	317, 507, 1143, 1272
TscAI	CASTG	2 cut(s)	552, 885
TseI	GCWGC	5 cut(s)	200, 203, 266, 383, 458
TspDTI	ATGAA	6 cut(s)	93, 492, 821, 1032, 1139, 1180
TspRI	CASTG	2 cut(s)	552, 885
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	784
XceI	RCATGY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	429
XspI	CTAG	3 cut(s)	126, 921, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.