Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Forward (+)

6184717 .. 6187499

Gene Structure 2783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCTTCTACAACAATCGGCGAGCACATCAGACTCCGACGAGCTAGAAACCAAACAATCCGTCATCTCCACGCCGCCGACGATGATCCGCCGCTAAGCCACGTCGTTCTTCCGATTTCACAACCTAATCGCTTCTGTAACTCCGCAATGTCTTCCTTCTTTCCCCTCCCGACTTCCTCCTCCAACGAAAGCACGAGGAAGAAACCGTACCAAACGTCGTCGTTTCGAGGGATGGGTTGCTATGCCGCAGCAGCAGCAGCAGCTCAAGAGGTTTCTGTTCCCTCCGTCATTCGCTACTCCGCGGATTTGGATGCCAGAATTAGAAAAGATAAGAAGAAGAAGAAGCATAAGCATAAGAAAAAGAAAAAGAAGAATAAAGGAAGCTACGAAGATGGTTCGATTAGGATTTTAAGCGAAGAAGCTAGAGACGTTATTGATGTTTGGTGCAGACCTGGATTAGGCTTCTCCACGGATGCTGTAATTGGTCGATCGGTTGATCCTCCTCGGGGAAGGAATATTCCGTCGTCTCGTCGCAAAATTGATGTGGATAACAACAATTATAATCACACACTGGGTTCTTCTGTTCTTCCCATTCGGTTTCTCAATCAAGAAACTCATTCTCATGATATCTTCAACTCTGATTCTACTTTTGTGACATCATCACGCGCTGAACCAACGATGTTGTCAAGTAGATGTCGTGGCCATCTTCCACGCTCTTACCCTGATGATCTTACCGAGATGAGGATGCTCCAGAATGGTTTTGTAATGGGAAGAATAACAGATTCCCGTGATAACTACCACGAATTGAGGCTCGATGTTGATAGCATGTCATACGAGCAACTTCTTGAGCTTGGTGATAGAATTGGTTATGTGAATACTGGACTAAAAGAAAGCGAGATACATCGTTGTCTTGGGAAAATCAAACCATCCGTATCACATACTCTTGTTGATAGAAAATGTAGCATCTGTCAGGATGAGTATGAGAGAGAGGATGAGGTTGGGGAATTGAACTGTGGACACAGCTTTCATGTCCATTGCGTGAAACAATGGCTTTCGAGGAAGAATGCTTGTCCGGTCTGTAAGAAGGCAGCATATGGCAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

368

Amino Acids

41.62

Weight (kDa)

9.33

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	313 - 361	8.5e-11	RING-H2 zinc finger domain
zf-RING_2	PF13639	319 - 361	2.6e-14	Ring finger domain
zf-C3HC4_2	PF13923	319 - 360	1.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	319 - 362	6.4e-07	zinc-RING finger domain
zf-C3HC4	PF00097	320 - 360	4.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	320 - 347	3e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	320 - 358	4.2e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AccII	CGCG	2 cut(s)	302, 666
AciI	CCGC	7 cut(s)	75, 89, 92, 144, 246, 300, 302
AclWI	GGATC	2 cut(s)	80, 491
AcoI	YGGCCR	1 cut(s)	700
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	458, 506, 741
AgsI	TTSAA	2 cut(s)	634, 1009
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	6 cut(s)	44, 263, 384, 422, 850, 1023
AluI	AGCT	6 cut(s)	44, 263, 384, 422, 850, 1023
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	420, 531
AlwI	GGATC	2 cut(s)	80, 491
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	6 cut(s)	248, 251, 254, 257, 260, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AspLEI	GCGC	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	866
AvaI	CYCGRG	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	702
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	6 cut(s)	260, 263, 266, 269, 272, 1100
BccI	CCATC	4 cut(s)	226, 386, 711, 934
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	420, 531
BfaI	CTAG	2 cut(s)	45, 423
BisI	GCNGC	9 cut(s)	75, 92, 246, 249, 252, 255, 258, 261, 1089
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	9 cut(s)	76, 93, 247, 250, 253, 256, 259, 262, 1090
Bme1390I	CCNGG	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	453
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	4 cut(s)	301, 463, 735, 972
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	734
Bpu1102I	GCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	2 cut(s)	249, 866
BsaJI	CCNNGG	3 cut(s)	300, 468, 503
BsaWI	WCCGGW	1 cut(s)	1072
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 506, 741
Bse1I	ACTGG	2 cut(s)	576, 883
Bse3DI	GCAATG	2 cut(s)	153, 1033
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	300, 468, 503
BseGI	GGATG	7 cut(s)	237, 316, 478, 750, 926, 979, 997
BseLI	CCNNNNNNNGG	3 cut(s)	458, 506, 741
BseMI	GCAATG	2 cut(s)	153, 1033
BseNI	ACTGG	2 cut(s)	576, 883
BseRI	GAGGAG	2 cut(s)	169, 492
BseXI	GCAGC	6 cut(s)	260, 263, 266, 269, 272, 1100
BsgI	GTGCAG	1 cut(s)	466
Bsh1236I	CGCG	2 cut(s)	302, 666
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	1073
BslI	CCNNNNNNNGG	3 cut(s)	458, 506, 741
BsmAI	GTCTC	2 cut(s)	420, 531
BsmBI	CGTCTC	2 cut(s)	420, 531
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	1 cut(s)	702
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	85, 488, 496, 727
Bsp1720I	GCTNAGC	1 cut(s)	95
BspACI	CCGC	7 cut(s)	75, 89, 92, 144, 246, 300, 302
BspANI	GGCC	1 cut(s)	702
BspFNI	CGCG	2 cut(s)	302, 666
BspHI	TCATGA	1 cut(s)	622
BspPI	GGATC	2 cut(s)	80, 491
BsrDI	GCAATG	2 cut(s)	153, 1033
BsrI	ACTGG	2 cut(s)	576, 883
BssECI	CCNNGG	3 cut(s)	300, 468, 503
BssMI	GATC	4 cut(s)	85, 488, 496, 727
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	207, 1013
BstC8I	GCNNGC	2 cut(s)	23, 1100
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	2 cut(s)	300, 468
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	7 cut(s)	237, 316, 478, 750, 926, 979, 997
BstFNI	CGCG	2 cut(s)	302, 666
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	4 cut(s)	88, 491, 499, 730
BstMAI	GTCTC	2 cut(s)	420, 531
BstMBI	GATC	4 cut(s)	85, 488, 496, 727
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 254, 257, 260
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	829
BstSCI	CCNGG	1 cut(s)	451
BstUI	CGCG	2 cut(s)	302, 666
BstV1I	GCAGC	6 cut(s)	260, 263, 266, 269, 272, 1100
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	702
BtgI	CCRYGG	2 cut(s)	300, 468
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	7 cut(s)	237, 316, 478, 750, 926, 979, 997
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	23, 1100
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	1 cut(s)	668
Cfr42I	CCGCGG	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	623, 826, 1028
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	4 cut(s)	87, 490, 498, 729
DpnII	GATC	4 cut(s)	85, 488, 496, 727
EaeI	YGGCCR	1 cut(s)	700
EciI	GGCGGA	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	628
Eco88I	CYCGRG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	628
Esp3I	CGTCTC	2 cut(s)	420, 531
FaeI	CATG	3 cut(s)	626, 829, 1031
FatI	CATG	3 cut(s)	622, 825, 1027
FauNDI	CATATG	1 cut(s)	1093
Fnu4HI	GCNGC	9 cut(s)	75, 92, 246, 249, 252, 255, 258, 261, 1089
FokI	GGATG	7 cut(s)	244, 323, 485, 757, 913, 986, 1004
Fsp4HI	GCNGC	9 cut(s)	75, 92, 246, 249, 252, 255, 258, 261, 1089
FspBI	CTAG	2 cut(s)	45, 423
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	9 cut(s)	75, 92, 246, 249, 252, 255, 258, 261, 1089
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	1073
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	3 cut(s)	626, 829, 1031
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HinfI	GANTC	3 cut(s)	33, 641, 782
HpaII	CCGG	1 cut(s)	1073
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	1 cut(s)	1016
Hpy188I	TCNGA	4 cut(s)	32, 38, 114, 640
Hpy188III	TCNNGA	7 cut(s)	169, 266, 608, 623, 751, 845, 971
Hpy8I	GTNNAC	1 cut(s)	1016
Hpy99I	CGWCG	7 cut(s)	42, 83, 107, 220, 223, 526, 534
HpyAV	CCTTC	3 cut(s)	166, 504, 1078
HpyCH4III	ACNGT	2 cut(s)	207, 1013
HpyCH4IV	ACGT	3 cut(s)	102, 215, 429
HpyCH4V	TGCA	1 cut(s)	447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 254, 257, 260
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	3 cut(s)	102, 215, 429
Hsp92II	CATG	3 cut(s)	626, 829, 1031
HspAI	GCGC	1 cut(s)	666
KspI	CCGCGG	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	85, 488, 496, 727
LmnI	GCTCC	1 cut(s)	753
LpnPI	CCDG	9 cut(s)	328, 438, 465, 557, 735, 764, 864, 956, 1086
Lsp1109I	GCAGC	6 cut(s)	260, 263, 266, 269, 272, 1100
LweI	GCATC	4 cut(s)	301, 463, 735, 972
MaeI	CTAG	2 cut(s)	45, 423
MaeII	ACGT	3 cut(s)	102, 215, 429
MaeIII	GTNAC	2 cut(s)	137, 652
MalI	GATC	4 cut(s)	87, 490, 498, 729
MboI	GATC	4 cut(s)	85, 488, 496, 727
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	7 cut(s)	318, 480, 537, 556, 803, 861, 1004
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	2 cut(s)	61, 207
Mox20I	TGGCCA	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	2 cut(s)	410, 1105
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	1073
MspR9I	CCNGG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	1069
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	2 cut(s)	302, 666
MwoI	GCNNNNNNNGC	4 cut(s)	251, 254, 257, 260
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	4 cut(s)	85, 488, 496, 727
NlaIII	CATG	3 cut(s)	626, 829, 1031
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	829
PagI	TCATGA	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	1069
PfeI	GAWTC	2 cut(s)	641, 782
PkrI	GCNGC	9 cut(s)	76, 93, 247, 250, 253, 256, 259, 262, 1090
Ple19I	CGATCG	1 cut(s)	491
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	621
SacII	CCGCGG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	410, 1105
SatI	GCNGC	9 cut(s)	75, 92, 246, 249, 252, 255, 258, 261, 1089
Sau3AI	GATC	4 cut(s)	85, 488, 496, 727
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	301, 463, 735, 972
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	2 cut(s)	264, 845
SmoI	CTYRAG	2 cut(s)	264, 845
Sse9I	AATT	7 cut(s)	318, 480, 537, 556, 803, 861, 1004
SsiI	CCGC	7 cut(s)	75, 89, 92, 144, 246, 300, 302
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	2 cut(s)	45, 423
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	207, 1013
TaiI	ACGT	3 cut(s)	105, 218, 432
TaqI	TCGA	5 cut(s)	226, 398, 487, 813, 1055
TasI	AATT	7 cut(s)	318, 480, 537, 556, 803, 861, 1004
TauI	GCSGC	3 cut(s)	77, 94, 248
TfiI	GAWTC	2 cut(s)	641, 782
Tru1I	TTAA	2 cut(s)	410, 1105
Tru9I	TTAA	2 cut(s)	410, 1105
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	6 cut(s)	248, 251, 254, 257, 260, 1088
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	1 cut(s)	1016
TspGWI	ACGGA	5 cut(s)	50, 274, 485, 510, 919
TspRI	CASTG	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	456
XceI	RCATGY	1 cut(s)	829
XspI	CTAG	2 cut(s)	45, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.