Rroxscaffold_3G00274060

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007225
Physical Location & Seq
Forward (+)
65765074 .. 65767887
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274060.1

Sequence Viewer

Length: 1134 bp
ATGCCTGTTCTTACAGAGAGCTCAGAGCACATGAAATGGAGAAGACCCAGAAGCCAATTAATCCAGCCCATTTCAGAAACAGATCCATACAACCCAAATCCAGCATCATCCATACTCCAATCCACTCGCTGCAAATCCACAATCTCCTCCCTCCTCCTCTCCAGCTTCACCACCACCACCAATGAAGCCTCATCCTCAAGCCTCAGCACCAAGAAGAAGACAAATTTCCCCTCATCAGCAAAGTTCAGAGGCTTGGGCTGCACAGCCTCAGCCTCACAGCAAGTCTCAGTGCCAGCTGTGATCAGGAGCTCAGCAGATTGGGAAGGGAAGAAGGTGAAGAAGAAAAAGGTTAATAAGAAGAATGTCAGGAATGAGTTCAAGGACAAGAGCCAGAACCAAGGAGTGGTTGATGGGCCTGTTGGGTTTGGGTTGAATTCTGCAACTTGTATGGATTTTCAGGATGTTTGGTGTGGGCCTGGAATTGGGTTCTCAGCAGAGACTGCTGGCTCTGTGGATTGTGTTGTGGCTAGGAGAAATGTTTCTGGAAGAGGCAAGATTGATGGGGATCATAATAGGATGAACAGCCACAGGGAGCGTCCTTGTTTAGCAAGGCGAACTGTGAACCCGGATACTATCTCGTTTCTTGATTCTGAACCTGAATTCCTCTTAAGCCGCCCTGGATCAGAGGTGTTTGGAAGTAGGTGTTATCGACATGTTCGCCATGCCTCTCCTGAAGGCCTCGCAGAGATTATGATGTTTCAAAGTAGTCTTATGATGGGTGGAAGATCAGACATGGATAGATATAGAGAGTGGAGACTTGATGTTGATAACATGACATACGAGGAACTGCTTGAGCTAGGTGAGAGAATTGGTTATGTGAGTACTGGATTAAAAGAAGATGAGATAAGCCGGTGCCTTCGAAAAATTAAGCTTTCAATGTTGAGTGATCGGTCACAACATTCACCTGGGCAAATAGATGGCAAGTGCATCATTTGTCAGGAGGAATATGAAGCAGATGATGAGATGGGTAGACTGAATTGTGGACACCTCTTCCACTTACAGTGTATAGAACAGTGGCTTGCTCACAAAAATACTTGCCCTTTTTGTAAGGTTGAAGCGACAACTAAACGCTAG

Protein Analysis

377

Amino Acids

42.21

Weight (kDa)

8.69

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 324 - 370 1.1e-10 RING-H2 zinc finger domain
zf-RING_2 PF13639 328 - 370 7.9e-15 Ring finger domain
zf-C3HC4_2 PF13923 328 - 369 3.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 328 - 370 3.7e-06 zinc-RING finger domain
zf-C3HC4 PF00097 329 - 369 2.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 329 - 367 5.5e-07 RING-type zinc-finger
zf-RING_11 PF17123 329 - 356 2.5e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 912
AccB7I CCANNNNNTGG 1 cut(s) 403
AccI GTMKAC 1 cut(s) 1030
AciI CCGC 1 cut(s) 673
AclWI GGATC 3 cut(s) 77, 573, 688
AcsI RAATTY 3 cut(s) 223, 433, 659
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 2 cut(s) 403, 482
AflII CTTAAG 1 cut(s) 667
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 5 cut(s) 379, 433, 761, 936, 1115
AjnI CCWGG 3 cut(s) 475, 676, 964
AloI GAACNNNNNNTCC 2 cut(s) 645, 677
AluBI AGCT 6 cut(s) 21, 165, 296, 309, 856, 931
AluI AGCT 6 cut(s) 21, 165, 296, 309, 856, 931
Alw21I GWGCWC 3 cut(s) 23, 30, 311
Alw26I GTCTC 3 cut(s) 289, 491, 808
AlwI GGATC 3 cut(s) 77, 573, 688
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 3 cut(s) 413, 473, 736
ApeKI GCWGC 2 cut(s) 129, 258
ApoI RAATTY 3 cut(s) 223, 433, 659
AseI ATTAAT 1 cut(s) 59
Asp700I GAANNNNTTC 2 cut(s) 374, 538
AspS9I GGNCC 2 cut(s) 413, 473
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 4 cut(s) 160, 346, 872, 954
AsuII TTCGAA 1 cut(s) 919
BanI GGYRCC 1 cut(s) 912
BanII GRGCYC 2 cut(s) 23, 311
BbsI GAAGAC 2 cut(s) 49, 224
Bbv12I GWGCWC 3 cut(s) 23, 30, 311
BbvCI CCTCAGC 2 cut(s) 203, 268
BbvI GCAGC 2 cut(s) 116, 245
BccI CCATC 5 cut(s) 404, 554, 769, 971, 1018
BciT130I CCWGG 3 cut(s) 477, 678, 966
BciVI GTATCC 1 cut(s) 622
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 3 cut(s) 289, 491, 808
BfaI CTAG 3 cut(s) 528, 857, 1132
BfrI CTTAAG 1 cut(s) 667
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 3 cut(s) 130, 259, 673
BlpI GCTNAGC 1 cut(s) 310
BlsI GCNGC 3 cut(s) 131, 260, 674
BmcAI AGTACT 1 cut(s) 883
Bme1390I CCNGG 4 cut(s) 477, 626, 678, 966
BmgT120I GGNCC 2 cut(s) 413, 473
BmiI GGNNCC 1 cut(s) 914
BmrFI CCNGG 4 cut(s) 477, 626, 678, 966
BmsI GCATC 2 cut(s) 113, 996
BpiI GAAGAC 2 cut(s) 49, 224
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 2 cut(s) 203, 268
Bpu1102I GCTNAGC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 919
BpuEI CTTGAG 2 cut(s) 181, 872
BpuMI CCSGG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 397, 676, 965
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 482
Bse118I RCCGGY 1 cut(s) 909
Bse1I ACTGG 1 cut(s) 889
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 3 cut(s) 477, 678, 966
BseDI CCNNGG 3 cut(s) 397, 676, 965
BseGI GGATG 4 cut(s) 107, 191, 466, 582
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 403, 482
BseMII CTCAG 6 cut(s) 36, 217, 282, 300, 324, 504
BseNI ACTGG 1 cut(s) 889
BseRI GAGGAG 3 cut(s) 136, 143, 146
BseXI GCAGC 2 cut(s) 116, 245
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 3 cut(s) 415, 475, 738
BshNI GGYRCC 1 cut(s) 912
BsiHKAI GWGCWC 3 cut(s) 23, 30, 311
BsiSI CCGG 2 cut(s) 626, 910
BslI CCNNNNNNNGG 2 cut(s) 403, 482
BsmAI GTCTC 3 cut(s) 289, 491, 808
BsnI GGCC 3 cut(s) 415, 475, 738
Bsp119I TTCGAA 1 cut(s) 919
Bsp1286I GDGCHC 3 cut(s) 23, 30, 311
Bsp143I GATC 6 cut(s) 82, 300, 565, 680, 785, 946
Bsp1720I GCTNAGC 1 cut(s) 310
BspACI CCGC 1 cut(s) 673
BspANI GGCC 3 cut(s) 415, 475, 738
BspCNI CTCAG 6 cut(s) 35, 216, 281, 299, 323, 503
BspLI GGNNCC 1 cut(s) 914
BspPI GGATC 3 cut(s) 77, 573, 688
BspT104I TTCGAA 1 cut(s) 919
BspT107I GGYRCC 1 cut(s) 912
BspTI CTTAAG 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 909
BsrI ACTGG 1 cut(s) 889
BssAI RCCGGY 1 cut(s) 909
BssECI CCNNGG 3 cut(s) 397, 676, 965
BssMI GATC 6 cut(s) 82, 300, 565, 680, 785, 946
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 3 cut(s) 477, 678, 966
Bst4CI ACNGT 3 cut(s) 619, 1062, 1074
Bst6I CTCTTC 2 cut(s) 541, 1055
BstAFI CTTAAG 1 cut(s) 667
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 919
BstC8I GCNNGC 3 cut(s) 294, 505, 1080
BstDEI CTNAG 6 cut(s) 22, 203, 268, 286, 310, 490
BstF5I GGATG 4 cut(s) 107, 191, 466, 582
BstKTI GATC 6 cut(s) 85, 303, 568, 683, 788, 949
BstMAI GTCTC 3 cut(s) 289, 491, 808
BstMBI GATC 6 cut(s) 82, 300, 565, 680, 785, 946
BstMWI GCNNNNNNNGC 2 cut(s) 258, 500
BstNI CCWGG 3 cut(s) 477, 678, 966
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 4 cut(s) 475, 624, 676, 964
BstV1I GCAGC 2 cut(s) 116, 245
BstV2I GAAGAC 2 cut(s) 49, 224
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 3 cut(s) 415, 475, 738
BtsCI GGATG 4 cut(s) 107, 191, 466, 582
BtsIMutI CAGTG 3 cut(s) 294, 1067, 1079
Cac8I GCNNGC 3 cut(s) 294, 505, 1080
CaiI CAGNNNCTG 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 909
Cfr13I GGNCC 2 cut(s) 413, 473
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 882
CviAII CATG 5 cut(s) 31, 713, 722, 793, 832
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 6 cut(s) 22, 203, 268, 286, 310, 490
DpnI GATC 6 cut(s) 84, 302, 567, 682, 787, 948
DpnII GATC 6 cut(s) 82, 300, 565, 680, 785, 946
Eam1104I CTCTTC 2 cut(s) 541, 1055
EarI CTCTTC 2 cut(s) 541, 1055
Ecl136II GAGCTC 2 cut(s) 21, 309
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 738
Eco24I GRGCYC 2 cut(s) 23, 311
Eco53kI GAGCTC 2 cut(s) 21, 309
Eco57I CTGAAG 1 cut(s) 753
EcoICRI GAGCTC 2 cut(s) 21, 309
EcoRI GAATTC 2 cut(s) 433, 659
EcoRII CCWGG 3 cut(s) 475, 676, 964
EcoT14I CCWWGG 1 cut(s) 397
EcoT38I GRGCYC 2 cut(s) 23, 311
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 5 cut(s) 34, 716, 725, 796, 835
FatI CATG 5 cut(s) 30, 712, 721, 792, 831
FbaI TGATCA 1 cut(s) 300
FblI GTMKAC 1 cut(s) 1030
Fnu4HI GCNGC 3 cut(s) 130, 259, 673
FokI GGATG 4 cut(s) 94, 178, 473, 589
FriOI GRGCYC 2 cut(s) 23, 311
Fsp4HI GCNGC 3 cut(s) 130, 259, 673
FspBI CTAG 3 cut(s) 528, 857, 1132
GluI GCNGC 3 cut(s) 130, 259, 673
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 3 cut(s) 415, 475, 738
HapII CCGG 2 cut(s) 626, 910
HgaI GACGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 34, 716, 725, 796, 835
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 1 cut(s) 647
HpaII CCGG 2 cut(s) 626, 910
HphI GGTGA 4 cut(s) 160, 346, 872, 954
Hpy166II GTNNAC 3 cut(s) 622, 1031, 1043
Hpy188I TCNGA 6 cut(s) 25, 76, 248, 652, 685, 790
Hpy188III TCNNGA 7 cut(s) 304, 367, 458, 543, 644, 731, 998
Hpy8I GTNNAC 3 cut(s) 622, 1031, 1043
HpyAV CCTTC 4 cut(s) 317, 325, 728, 926
HpyCH4III ACNGT 3 cut(s) 619, 1062, 1074
HpyCH4V TGCA 4 cut(s) 132, 261, 440, 987
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 500
HpyF3I CTNAG 6 cut(s) 22, 203, 268, 286, 310, 490
Hsp92II CATG 5 cut(s) 34, 716, 725, 796, 835
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 6 cut(s) 82, 300, 565, 680, 785, 946
LmnI GCTCC 2 cut(s) 306, 592
Lsp1109I GCAGC 2 cut(s) 116, 245
LweI GCATC 2 cut(s) 113, 996
MaeI CTAG 3 cut(s) 528, 857, 1132
MaeIII GTNAC 1 cut(s) 951
MalI GATC 6 cut(s) 84, 302, 567, 682, 787, 948
MboI GATC 6 cut(s) 82, 300, 565, 680, 785, 946
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 23, 30, 311
MluCI AATT 8 cut(s) 56, 223, 433, 480, 659, 867, 924, 1036
MroXI GAANNNNTTC 2 cut(s) 374, 538
MseI TTAA 5 cut(s) 59, 351, 668, 890, 927
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 2 cut(s) 626, 910
MspR9I CCNGG 4 cut(s) 477, 626, 678, 966
MvaI CCWGG 3 cut(s) 477, 678, 966
MwoI GCNNNNNNNGC 2 cut(s) 258, 500
NciI CCSGG 1 cut(s) 626
NdeII GATC 6 cut(s) 82, 300, 565, 680, 785, 946
NlaIII CATG 5 cut(s) 34, 716, 725, 796, 835
NlaIV GGNNCC 1 cut(s) 914
NmuCI GTSAC 1 cut(s) 951
NspI RCATGY 1 cut(s) 716
NspV TTCGAA 1 cut(s) 919
PceI AGGCCT 1 cut(s) 738
PciI ACATGT 1 cut(s) 712
PdmI GAANNNNTTC 2 cut(s) 374, 538
PfeI GAWTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 3 cut(s) 131, 260, 674
PscI ACATGT 1 cut(s) 712
PshBI ATTAAT 1 cut(s) 59
Psp124BI GAGCTC 2 cut(s) 23, 311
Psp6I CCWGG 3 cut(s) 475, 676, 964
PspGI CCWGG 3 cut(s) 475, 676, 964
PspN4I GGNNCC 1 cut(s) 914
PspPI GGNCC 2 cut(s) 413, 473
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
SacI GAGCTC 2 cut(s) 23, 311
SaqAI TTAA 5 cut(s) 59, 351, 668, 890, 927
SatI GCNGC 3 cut(s) 130, 259, 673
Sau3AI GATC 6 cut(s) 82, 300, 565, 680, 785, 946
Sau96I GGNCC 2 cut(s) 413, 473
ScaI AGTACT 1 cut(s) 883
ScrFI CCNGG 4 cut(s) 477, 626, 678, 966
SduI GDGCHC 3 cut(s) 23, 30, 311
SfaNI GCATC 2 cut(s) 113, 996
SfuI TTCGAA 1 cut(s) 919
SmlI CTYRAG 3 cut(s) 196, 667, 851
SmoI CTYRAG 3 cut(s) 196, 667, 851
Sse9I AATT 8 cut(s) 56, 223, 433, 480, 659, 867, 924, 1036
SseBI AGGCCT 1 cut(s) 738
SsiI CCGC 1 cut(s) 673
SspMI CTAG 3 cut(s) 528, 857, 1132
SstI GAGCTC 2 cut(s) 23, 311
StuI AGGCCT 1 cut(s) 738
StyD4I CCNGG 4 cut(s) 475, 624, 676, 964
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 619, 1062, 1074
TaqI TCGA 2 cut(s) 709, 919
TaqII GACCGA 1 cut(s) 939
TasI AATT 8 cut(s) 56, 223, 433, 480, 659, 867, 924, 1036
TatI WGTACW 1 cut(s) 881
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 5 cut(s) 59, 351, 668, 890, 927
Tru9I TTAA 5 cut(s) 59, 351, 668, 890, 927
TscAI CASTG 3 cut(s) 294, 1067, 1079
TseFI GTSAC 1 cut(s) 951
TseI GCWGC 2 cut(s) 129, 258
Tsp45I GTSAC 1 cut(s) 951
TspDTI ATGAA 4 cut(s) 47, 198, 593, 1023
TspRI CASTG 3 cut(s) 294, 1067, 1079
Van91I CCANNNNNTGG 1 cut(s) 403
Vha464I CTTAAG 1 cut(s) 667
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 3 cut(s) 223, 433, 659
XceI RCATGY 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 1030
XmnI GAANNNNTTC 2 cut(s) 374, 538
XspI CTAG 3 cut(s) 528, 857, 1132
ZrmI AGTACT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.