Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438249.1

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1483

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

cgtccttgttttgcaaggcgaactgtgaacccggatactatctcgtttcttgattctgaacctgaattcctcttaagccgccctggatcagaggtgtttggaagtaggtgttatcgacatgttcgccatgcctctcctgaaggcctcgcagagattatgatgtttcaaagtagtcttatgatgggtggaagatcagacatggatagatatagagagtggagacttgatgttgataacatgacatatgaggaactgcttgagctaggtgagagaattggttatgtgagtactggattaaaagaagatgagataagccggtgccttcgaaaaattaagctttcaatgttgagtgatcggtcacaacattcacctgggcaaatagatggcaagtgcatcatttgtcaggaggaatatgaagcagatgatgagatgggtagactgaattgtggacacctcttccacttacagtgtatagaacagtggcttgctcataaaaatacttgcccattttgtaaggttgaagcgacaactaaacgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

179

Amino Acids

20.75

Weight (kDa)

5.72

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	167, 342, 521
AjnI	CCWGG	2 cut(s)	82, 370
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	2 cut(s)	262, 337
AluI	AGCT	2 cut(s)	262, 337
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	278, 360
AsuII	TTCGAA	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	318
BccI	CCATC	3 cut(s)	175, 377, 424
BciT130I	CCWGG	2 cut(s)	84, 372
BciVI	GTATCC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	263, 538
BfrI	CTTAAG	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	3 cut(s)	32, 84, 372
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	3 cut(s)	32, 84, 372
BmsI	GCATC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	82, 371
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	84, 372
BseDI	CCNNGG	2 cut(s)	82, 371
BseNI	ACTGG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	32, 316
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	86, 191, 352
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	82, 371
BssMI	GATC	3 cut(s)	86, 191, 352
Bst2UI	CCWGG	2 cut(s)	84, 372
Bst4CI	ACNGT	3 cut(s)	25, 468, 480
Bst6I	CTCTTC	1 cut(s)	461
BstAFI	CTTAAG	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	486
BstKTI	GATC	3 cut(s)	89, 194, 355
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	3 cut(s)	86, 191, 352
BstNI	CCWGG	2 cut(s)	84, 372
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	30, 82, 370
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	473, 485
Cac8I	GCNNGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	4 cut(s)	119, 128, 199, 238
CviJI	RGCY	6 cut(s)	78, 144, 262, 315, 337, 484
CviKI_1	RGCY	6 cut(s)	78, 144, 262, 315, 337, 484
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	3 cut(s)	88, 193, 354
DpnII	GATC	3 cut(s)	86, 191, 352
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco147I	AGGCCT	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	82, 370
FaeI	CATG	4 cut(s)	122, 131, 202, 241
FatI	CATG	4 cut(s)	118, 127, 198, 237
FauNDI	CATATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	2 cut(s)	263, 538
GluI	GCNGC	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	2 cut(s)	32, 316
Hin1II	CATG	4 cut(s)	122, 131, 202, 241
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	2 cut(s)	32, 316
HphI	GGTGA	2 cut(s)	278, 360
Hpy166II	GTNNAC	3 cut(s)	28, 437, 449
Hpy188I	TCNGA	3 cut(s)	58, 91, 196
Hpy188III	TCNNGA	3 cut(s)	50, 137, 404
Hpy8I	GTNNAC	3 cut(s)	28, 437, 449
HpyAV	CCTTC	2 cut(s)	134, 332
HpyCH4III	ACNGT	3 cut(s)	25, 468, 480
HpyCH4V	TGCA	2 cut(s)	14, 393
Hsp92II	CATG	4 cut(s)	122, 131, 202, 241
Kzo9I	GATC	3 cut(s)	86, 191, 352
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	263, 538
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	3 cut(s)	88, 193, 354
MboI	GATC	3 cut(s)	86, 191, 352
MboII	GAAGA	3 cut(s)	201, 314, 448
MluCI	AATT	4 cut(s)	65, 273, 330, 442
MnlI	CCTC	7 cut(s)	80, 85, 142, 155, 241, 400, 464
MseI	TTAA	3 cut(s)	74, 296, 333
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	2 cut(s)	32, 316
MspR9I	CCNGG	3 cut(s)	32, 84, 372
MvaI	CCWGG	2 cut(s)	84, 372
NciI	CCSGG	1 cut(s)	32
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	86, 191, 352
NlaIII	CATG	4 cut(s)	122, 131, 202, 241
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	144
PciI	ACATGT	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	82, 370
PspGI	CCWGG	2 cut(s)	82, 370
PspN4I	GGNNCC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	74, 296, 333
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	3 cut(s)	86, 191, 352
ScaI	AGTACT	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	32, 84, 372
SetI	ASST	9 cut(s)	64, 96, 110, 264, 268, 339, 373, 456, 519
SfaNI	GCATC	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	73, 257
SmoI	CTYRAG	2 cut(s)	73, 257
Sse9I	AATT	4 cut(s)	65, 273, 330, 442
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	263, 538
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	30, 82, 370
TaaI	ACNGT	3 cut(s)	25, 468, 480
TaqI	TCGA	2 cut(s)	115, 325
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	65, 273, 330, 442
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	74, 296, 333
Tru9I	TTAA	3 cut(s)	74, 296, 333
TscAI	CASTG	2 cut(s)	473, 485
TseFI	GTSAC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	473, 485
Vha464I	CTTAAG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	2 cut(s)	263, 538
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.