AT1G73760

Zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007225
Physical Location & Seq
Reverse (-)
27739168 .. 27742008
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73760.1

Sequence Viewer

Length: 1104 bp
ATGCCAGTTTCTGCAGAGCCTTCTTCATCTTCTTCAACAACAATCGGTCAACACATGAGACTCCAACGACCTAGGAATCATCGAAATCTCCCACCCATTTCCACCGCCGACGAACCTCTAATCCCCAAACCTAGCCGCGTCTCTAAATCCGCCATGTCTTCCTTCTTCCTCTTGCCAGAAACTACTAAGAAGAAACCCAACGGAACGGCGTCGTTTCGTGGTCTAGGCTGCACAACCTCCGCATCTCAGCAAGTTTCAGTCCCGGCAGTGATTCGCTCCTCCGCGGATTGGGATGCTAGTAATTTCAAAATTAAGAAGACGAAGAAGAAGAACAAGAACAAGGGTAGTAGTAGCTACAATGGTGGTTCGATTAAGATCTTGAGCGAAGCTAGTACTAGTAGTAGCGTCGCTTGCGCAGCGATTCCTGATGTTTGGTGTGGTCCTGGAGTTGGGTTTTCAACGGATGCTGTCGTCGGAGGCTCCATTGACACAGTTGTTTCAGATCCTCCGAGAAGGAATATTCCGGTGAGACGCAAAATCGATGGAGATAAAACCAATAGTAACAGTAATAATCATAGAGAGGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTCTAATCCTTATTTTGATTCTGATTCGAGTTTTTTGACATCGCGGGCTGAGCAGACTGATAGATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAGATGATGATGATGCAGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCGTGACATGAGGCTCAATGTCGATAACATGACATACGAGCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATGTGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCCGGCAAGATACAACAGTTGCTGATAGAAAGTGCATCATCTGTCAAGACGAGTATGAGGCGAAGGACGAGGTAGGGGAATTACGATGTGGGCACAGGTTCCATATCGACTGTGTGAATCAATGGCTTGTGAGGAAGAACTCTTGTCCGGTCTGTAAAACGATGGCGTACAATAAGTCTTAG

Protein Analysis

367

Amino Acids

40.62

Weight (kDa)

9.38

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 315 - 360 2.7e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 318 - 360 8.2e-14 Ring finger domain
zf-C3HC4_2 PF13923 318 - 359 1.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 318 - 361 9.2e-06 zinc-RING finger domain
zf-C3HC4 PF00097 319 - 359 1.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 319 - 346 1.9e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 415
AccII CGCG 3 cut(s) 138, 284, 667
AciI CCGC 7 cut(s) 105, 136, 150, 240, 282, 284, 667
AclWI GGATC 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 2 cut(s) 394, 1091
AfiI CCNNNNNNNGG 2 cut(s) 288, 449
AgsI TTSAA 3 cut(s) 36, 307, 459
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 442
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 4 cut(s) 354, 389, 777, 844
AluI AGCT 4 cut(s) 354, 389, 777, 844
Alw26I GTCTC 3 cut(s) 52, 145, 523
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 2 cut(s) 11, 944
ApeKI GCWGC 2 cut(s) 228, 416
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 538, 860
AvaII GGWCC 1 cut(s) 440
AvrII CCTAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 1017
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BbsI GAAGAC 3 cut(s) 150, 323, 896
BbvI GCAGC 2 cut(s) 215, 428
BccI CCATC 4 cut(s) 536, 713, 754, 1078
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 52, 145, 523
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 7 cut(s) 72, 132, 224, 297, 390, 396, 603
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 375
BisI GCNGC 3 cut(s) 136, 229, 417
BlnI CCTAGG 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 3 cut(s) 137, 230, 418
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 263, 444
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 481, 1022
BmrFI CCNGG 2 cut(s) 263, 444
BmsI GCATC 5 cut(s) 251, 283, 454, 732, 966
BpiI GAAGAC 3 cut(s) 150, 323, 896
BpmI CTGGAG 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 540
BsaBI GATNNNNATC 2 cut(s) 374, 687
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 71, 282
BsaWI WCCGGW 2 cut(s) 523, 1069
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 449
Bse118I RCCGGY 1 cut(s) 924
Bse1I ACTGG 2 cut(s) 5, 877
Bse8I GATNNNNATC 2 cut(s) 374, 687
BseBI CCWGG 1 cut(s) 444
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 71, 282
BseGI GGATG 2 cut(s) 298, 469
BseJI GATNNNNATC 2 cut(s) 374, 687
BseLI CCNNNNNNNGG 2 cut(s) 288, 449
BseMII CTCAG 3 cut(s) 260, 663, 720
BseNI ACTGG 2 cut(s) 5, 877
BseRI GAGGAG 2 cut(s) 268, 780
BseSI GKGCMC 1 cut(s) 1017
BseXI GCAGC 2 cut(s) 215, 428
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 3 cut(s) 138, 284, 667
BshVI ATCGAT 1 cut(s) 540
BsiSI CCGG 4 cut(s) 263, 524, 925, 1070
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 288, 449
BsmAI GTCTC 3 cut(s) 52, 145, 523
BsmBI CGTCTC 2 cut(s) 145, 523
BsmFI GGGAC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp143I GATC 5 cut(s) 375, 502, 608, 784, 891
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 7 cut(s) 105, 136, 150, 240, 282, 284, 667
BspCNI CTCAG 3 cut(s) 259, 664, 721
BspDI ATCGAT 1 cut(s) 540
BspFNI CGCG 3 cut(s) 138, 284, 667
BspLI GGNNCC 2 cut(s) 481, 1022
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 924
BsrI ACTGG 2 cut(s) 5, 877
BssAI RCCGGY 1 cut(s) 924
BssECI CCNNGG 2 cut(s) 71, 282
BssMI GATC 5 cut(s) 375, 502, 608, 784, 891
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 4 cut(s) 493, 566, 940, 1034
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 412, 669, 926
BstDEI CTNAG 6 cut(s) 186, 246, 672, 701, 729, 1101
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 298, 469
BstFNI CGCG 3 cut(s) 138, 284, 667
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 5 cut(s) 378, 505, 611, 787, 894
BstMAI GTCTC 3 cut(s) 52, 145, 523
BstMBI GATC 5 cut(s) 375, 502, 608, 784, 891
BstMWI GCNNNNNNNGC 3 cut(s) 411, 416, 673
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 2 cut(s) 261, 442
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 1017
BstUI CGCG 3 cut(s) 138, 284, 667
BstV1I GCAGC 2 cut(s) 215, 428
BstV2I GAAGAC 3 cut(s) 150, 323, 896
BstX2I RGATCY 2 cut(s) 375, 502
BstYI RGATCY 2 cut(s) 375, 502
Bsu15I ATCGAT 1 cut(s) 540
BsuTUI ATCGAT 1 cut(s) 540
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 298, 469
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 273, 870
Cac8I GCNNGC 3 cut(s) 412, 669, 926
CaiI CAGNNNCTG 2 cut(s) 11, 944
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 924
Cfr13I GGNCC 1 cut(s) 440
Cfr42I CCGCGG 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 540
CseI GACGC 4 cut(s) 127, 198, 394, 540
Csp6I GTAC 2 cut(s) 393, 1090
CviAII CATG 6 cut(s) 55, 154, 799, 820, 863, 921
CviQI GTAC 2 cut(s) 393, 1090
DdeI CTNAG 6 cut(s) 186, 246, 672, 701, 729, 1101
DpnI GATC 5 cut(s) 377, 504, 610, 786, 893
DpnII GATC 5 cut(s) 375, 502, 608, 784, 891
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 71
Eco32I GATATC 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 689
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
Esp3I CGTCTC 2 cut(s) 145, 523
FaeI CATG 6 cut(s) 58, 157, 802, 823, 866, 924
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 1 cut(s) 245
FatI CATG 6 cut(s) 54, 153, 798, 819, 862, 920
FauI CCCGC 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 136, 229, 417
FokI GGATG 2 cut(s) 305, 476
Fsp4HI GCNGC 3 cut(s) 136, 229, 417
FspBI CTAG 7 cut(s) 72, 132, 224, 297, 390, 396, 603
FspI TGCGCA 1 cut(s) 415
GlaI GCGC 1 cut(s) 415
GluI GCNGC 3 cut(s) 136, 229, 417
GsuI CTGGAG 1 cut(s) 465
HapII CCGG 4 cut(s) 263, 524, 925, 1070
HgaI GACGC 4 cut(s) 127, 198, 394, 540
HhaI GCGC 1 cut(s) 416
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 6 cut(s) 58, 157, 802, 823, 866, 924
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HinfI GANTC 9 cut(s) 60, 76, 271, 421, 623, 641, 647, 723, 1039
HpaII CCGG 4 cut(s) 263, 524, 925, 1070
HphI GGTGA 2 cut(s) 538, 860
Hpy166II GTNNAC 2 cut(s) 50, 868
Hpy188I TCNGA 5 cut(s) 476, 502, 510, 646, 909
Hpy188III TCNNGA 4 cut(s) 379, 425, 620, 968
Hpy8I GTNNAC 2 cut(s) 50, 868
Hpy99I CGWCG 4 cut(s) 113, 214, 410, 476
HpyAV CCTTC 4 cut(s) 30, 172, 507, 979
HpyCH4III ACNGT 4 cut(s) 493, 566, 940, 1034
HpyCH4V TGCA 4 cut(s) 14, 231, 745, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 411, 416, 673
HpyF3I CTNAG 6 cut(s) 186, 246, 672, 701, 729, 1101
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 6 cut(s) 58, 157, 802, 823, 866, 924
HspAI GCGC 1 cut(s) 414
KroI GCCGGC 1 cut(s) 924
KroNI GCCGGC 1 cut(s) 926
KspI CCGCGG 1 cut(s) 285
Kzo9I GATC 5 cut(s) 375, 502, 608, 784, 891
LmnI GCTCC 3 cut(s) 281, 485, 841
Lsp1109I GCAGC 2 cut(s) 215, 428
LweI GCATC 5 cut(s) 251, 283, 454, 732, 966
MaeI CTAG 7 cut(s) 72, 132, 224, 297, 390, 396, 603
MaeIII GTNAC 2 cut(s) 560, 794
MalI GATC 5 cut(s) 377, 504, 610, 786, 893
MboI GATC 5 cut(s) 375, 502, 608, 784, 891
MflI RGATCY 2 cut(s) 375, 502
MhlI GDGCHC 1 cut(s) 1017
MluCI AATT 5 cut(s) 301, 309, 788, 855, 1001
MlyI GAGTC 3 cut(s) 54, 632, 717
MmeI TCCRAC 2 cut(s) 88, 454
MroNI GCCGGC 1 cut(s) 924
MseI TTAA 3 cut(s) 312, 372, 773
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 4 cut(s) 263, 524, 925, 1070
MspR9I CCNGG 2 cut(s) 263, 444
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 3 cut(s) 138, 284, 667
MwoI GCNNNNNNNGC 3 cut(s) 411, 416, 673
NaeI GCCGGC 1 cut(s) 926
NciI CCSGG 1 cut(s) 263
NdeII GATC 5 cut(s) 375, 502, 608, 784, 891
NgoMIV GCCGGC 1 cut(s) 924
NlaIII CATG 6 cut(s) 58, 157, 802, 823, 866, 924
NlaIV GGNNCC 2 cut(s) 481, 1022
NmuCI GTSAC 1 cut(s) 794
NsbI TGCGCA 1 cut(s) 415
NspI RCATGY 1 cut(s) 866
PdiI GCCGGC 1 cut(s) 926
PfeI GAWTC 6 cut(s) 76, 271, 421, 641, 647, 1039
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 3 cut(s) 137, 230, 418
PleI GAGTC 3 cut(s) 54, 631, 717
PpsI GAGTC 3 cut(s) 54, 631, 717
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 481, 1022
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 2 cut(s) 11, 944
PsuI RGATCY 2 cut(s) 375, 502
RsaI GTAC 2 cut(s) 394, 1091
RsaNI GTAC 2 cut(s) 393, 1090
SacII CCGCGG 1 cut(s) 285
SaqAI TTAA 3 cut(s) 312, 372, 773
SatI GCNGC 3 cut(s) 136, 229, 417
Sau3AI GATC 5 cut(s) 375, 502, 608, 784, 891
Sau96I GGNCC 1 cut(s) 440
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 3 cut(s) 54, 632, 717
ScrFI CCNGG 2 cut(s) 263, 444
SduI GDGCHC 1 cut(s) 1017
SfaNI GCATC 5 cut(s) 251, 283, 454, 732, 966
SfcI CTRYAG 1 cut(s) 12
Sfr303I CCGCGG 1 cut(s) 285
SgrBI CCGCGG 1 cut(s) 285
SinI GGWCC 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 5 cut(s) 301, 309, 788, 855, 1001
SsiI CCGC 7 cut(s) 105, 136, 150, 240, 282, 284, 667
SspI AATATT 1 cut(s) 520
SspMI CTAG 7 cut(s) 72, 132, 224, 297, 390, 396, 603
StyD4I CCNGG 2 cut(s) 261, 442
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 4 cut(s) 493, 566, 940, 1034
TaqI TCGA 7 cut(s) 82, 368, 540, 650, 783, 813, 1029
TaqII GACCGA 1 cut(s) 35
TasI AATT 5 cut(s) 301, 309, 788, 855, 1001
TatI WGTACW 1 cut(s) 392
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 6 cut(s) 76, 271, 421, 641, 647, 1039
Tru1I TTAA 3 cut(s) 312, 372, 773
Tru9I TTAA 3 cut(s) 312, 372, 773
TscAI CASTG 2 cut(s) 273, 877
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 2 cut(s) 228, 416
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 3 cut(s) 216, 476, 782
TspRI CASTG 2 cut(s) 273, 877
VpaK11BI GGWCC 1 cut(s) 440
XceI RCATGY 1 cut(s) 866
XmaJI CCTAGG 1 cut(s) 71
XspI CTAG 7 cut(s) 72, 132, 224, 297, 390, 396, 603
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.