Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8089052.1

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 491

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8089052.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgcctgttcttacagagagctcagagcacatgaaatggagaagacccagaagccaattaatccagcccatttcagaaacagatccatacaacccaaatccagcaccatccataatccaatccactcgctgcaaatccacaatctcctccctcctcctctccaacttcaccaccaccaccaatgaagcctcatcctcaagcctcagcaccaagaagaagacaaacttcccctcatcagcaaagttcagaggcctgggctgcacagcctcagcctcacagcaagtctcagtgccagctgtgatcaggagctcagcagattgggaagggaagaaggtgaagaagaaaaaggttaataagaagaatgtcaggcatgagttcaaggacaagagccagaaccaaggagtggttgatgggcctgttgggtttgggttgaattctgcaacttgtatggattttcaggatgtttggtgtgggcctggaattgggttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

163

Amino Acids

17.81

Weight (kDa)

9.79

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	403
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	403, 482
AgsI	TTSAA	2 cut(s)	379, 433
AjnI	CCWGG	2 cut(s)	252, 475
AluBI	AGCT	3 cut(s)	21, 296, 309
AluI	AGCT	3 cut(s)	21, 296, 309
Alw21I	GWGCWC	3 cut(s)	23, 30, 311
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	3 cut(s)	250, 413, 473
ApeKI	GCWGC	2 cut(s)	129, 258
ApoI	RAATTY	1 cut(s)	433
AseI	ATTAAT	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	413, 473
AsuHPI	GGTGA	2 cut(s)	160, 346
BanII	GRGCYC	2 cut(s)	23, 311
BbsI	GAAGAC	2 cut(s)	49, 224
Bbv12I	GWGCWC	3 cut(s)	23, 30, 311
BbvCI	CCTCAGC	2 cut(s)	203, 268
BbvI	GCAGC	2 cut(s)	116, 245
BccI	CCATC	2 cut(s)	115, 404
BciT130I	CCWGG	2 cut(s)	254, 477
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	130, 259
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	2 cut(s)	131, 260
Bme1390I	CCNGG	2 cut(s)	254, 477
BmgT120I	GGNCC	2 cut(s)	413, 473
BmrFI	CCNGG	2 cut(s)	254, 477
BpiI	GAAGAC	2 cut(s)	49, 224
Bpu10I	CCTNAGC	2 cut(s)	203, 268
Bpu1102I	GCTNAGC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	253, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 482
BseBI	CCWGG	2 cut(s)	254, 477
BseDI	CCNNGG	2 cut(s)	253, 397
BseGI	GGATG	3 cut(s)	107, 191, 466
BseLI	CCNNNNNNNGG	2 cut(s)	403, 482
BseMII	CTCAG	5 cut(s)	36, 217, 282, 300, 324
BseRI	GAGGAG	3 cut(s)	136, 143, 146
BseXI	GCAGC	2 cut(s)	116, 245
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	252, 415, 475
BsiHKAI	GWGCWC	3 cut(s)	23, 30, 311
BslI	CCNNNNNNNGG	2 cut(s)	403, 482
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	252, 415, 475
Bsp1286I	GDGCHC	3 cut(s)	23, 30, 311
Bsp143I	GATC	2 cut(s)	82, 300
Bsp1720I	GCTNAGC	1 cut(s)	310
BspANI	GGCC	3 cut(s)	252, 415, 475
BspCNI	CTCAG	5 cut(s)	35, 216, 281, 299, 323
BspPI	GGATC	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	253, 397
BssMI	GATC	2 cut(s)	82, 300
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	254, 477
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	22, 203, 268, 286, 310
BstF5I	GGATG	3 cut(s)	107, 191, 466
BstKTI	GATC	2 cut(s)	85, 303
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	82, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	2 cut(s)	254, 477
BstSCI	CCNGG	2 cut(s)	252, 475
BstV1I	GCAGC	2 cut(s)	116, 245
BstV2I	GAAGAC	2 cut(s)	49, 224
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	252, 415, 475
BtsCI	GGATG	3 cut(s)	107, 191, 466
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	413, 473
CviAII	CATG	2 cut(s)	31, 371
DdeI	CTNAG	5 cut(s)	22, 203, 268, 286, 310
DpnI	GATC	2 cut(s)	84, 302
DpnII	GATC	2 cut(s)	82, 300
Ecl136II	GAGCTC	2 cut(s)	21, 309
Eco130I	CCWWGG	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	23, 311
Eco53kI	GAGCTC	2 cut(s)	21, 309
EcoICRI	GAGCTC	2 cut(s)	21, 309
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	252, 475
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	23, 311
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	2 cut(s)	34, 374
FaiI	YATR	5 cut(s)	32, 88, 113, 372, 449
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	2 cut(s)	30, 370
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	130, 259
FokI	GGATG	3 cut(s)	94, 178, 473
FriOI	GRGCYC	2 cut(s)	23, 311
Fsp4HI	GCNGC	2 cut(s)	130, 259
GluI	GCNGC	2 cut(s)	130, 259
HaeIII	GGCC	3 cut(s)	252, 415, 475
Hin1II	CATG	2 cut(s)	34, 374
HphI	GGTGA	2 cut(s)	160, 346
Hpy188I	TCNGA	3 cut(s)	25, 76, 248
Hpy188III	TCNNGA	2 cut(s)	304, 458
HpyAV	CCTTC	2 cut(s)	317, 325
HpyCH4V	TGCA	3 cut(s)	132, 261, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	5 cut(s)	22, 203, 268, 286, 310
Hsp92II	CATG	2 cut(s)	34, 374
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	82, 300
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	2 cut(s)	116, 245
MalI	GATC	2 cut(s)	84, 302
MboI	GATC	2 cut(s)	82, 300
MboII	GAAGA	7 cut(s)	54, 226, 229, 340, 349, 352, 370
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	3 cut(s)	23, 30, 311
MluCI	AATT	3 cut(s)	56, 433, 480
MmeI	TCCRAC	1 cut(s)	186
MseI	TTAA	2 cut(s)	59, 351
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	254, 477
MvaI	CCWGG	2 cut(s)	254, 477
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	2 cut(s)	82, 300
NlaIII	CATG	2 cut(s)	34, 374
PceI	AGGCCT	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	131, 260
PshBI	ATTAAT	1 cut(s)	59
Psp124BI	GAGCTC	2 cut(s)	23, 311
Psp6I	CCWGG	2 cut(s)	252, 475
PspGI	CCWGG	2 cut(s)	252, 475
PspPI	GGNCC	2 cut(s)	413, 473
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	296
SacI	GAGCTC	2 cut(s)	23, 311
SaqAI	TTAA	2 cut(s)	59, 351
SatI	GCNGC	2 cut(s)	130, 259
Sau3AI	GATC	2 cut(s)	82, 300
Sau96I	GGNCC	2 cut(s)	413, 473
ScrFI	CCNGG	2 cut(s)	254, 477
SduI	GDGCHC	3 cut(s)	23, 30, 311
SetI	ASST	5 cut(s)	23, 298, 311, 336, 351
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	56, 433, 480
SseBI	AGGCCT	1 cut(s)	252
SstI	GAGCTC	2 cut(s)	23, 311
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	252, 475
StyI	CCWWGG	1 cut(s)	397
TasI	AATT	3 cut(s)	56, 433, 480
Tru1I	TTAA	2 cut(s)	59, 351
Tru9I	TTAA	2 cut(s)	59, 351
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	129, 258
TspDTI	ATGAA	2 cut(s)	47, 198
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	403
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.