Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Reverse (-)

1727924 .. 1731128

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCCTGTTCTTACAGAGAACTCAGAGCACATGAAATGGAGAAGACCCAGAAGCCAATTAATCCAGCCCATTTCAGAAACAGATCCATACAACCCAAATCCAGCACCATCCATAATCCAATCCACTCGCTGCAAATCCACAATCTCCTCCCTCCTCCTCTCCAACTTCACCGCCACCACCAATGAAGCCTCATCCTCAAGCCTCAGCACCAAGAAGAAGACAAACTTCCCCTCATCAGCAAAGTTCAGAGGCTTGGGCTGCACAGCCTCAGCCTCACAGCAAGTCTCAGTGCCAGCTGTGATCAGGAGCTCAGCAGATTGGGAAGGGAAGAAGATGAAGAAGAAAAAGGTTAATAAGAAGAATGTCAGGAATGAGTTCAAGGACAAGAGCCAGAACCAAGGAGTGGTTGATGGGCCTGTTGGGTTTGGGTTGAATTCTGCAACTTGTATGGATTTTCAGGATGTTTGGTGTGGGCCTGGAATTGGGTTCTCAGCAGAGACTGCTGGCTCTGTGGATTGTGTTGTGGCTAGGAGAAATGTTTCTGGAAGAGGCAAGATTGATGGGGATCATAATAGGATGAACAGCCACAGGGAGCGTCCTTGTTTAGCAAGGCGAACTGTGAACCCGGATACTATCTCGTTTCTTGATTCTGAACCTGAATTCCTCTTAAGCCGCCCTGGATCAGAGGTGTTTGGAAGTAGGTGTTATCGACATGTTCGCCATGCCTCTCCTGAAGGCCTCGCAGAGATTATGATGTTTCAAAGTAGTCTTATGATGGGTGGAAGATCAGACATGGATAGATATAGAGAGTGGAGACTTGATGTTGATAACATGACATATGAGGAACTGCTTGAGCTAGGTGAGAGAATTGGTTATGTGAGTACTGGATTAAAAGAAGATGAGATAAGCCGGTGCCTTCGAAAAATTAAGCTTTCAATGTTGAGTGATCGGTCACAACATTCACCTGGGCAAATAGATGGCAAGTGCATCATTTGTCAGGTGAGCTTGGAAAACTATTGTTATTGTTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

344

Amino Acids

38.4

Weight (kDa)

8.95

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	912
AccB7I	CCANNNNNTGG	1 cut(s)	403
AciI	CCGC	2 cut(s)	171, 673
AclWI	GGATC	3 cut(s)	77, 573, 688
AcsI	RAATTY	2 cut(s)	433, 659
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	1 cut(s)	883
AfiI	CCNNNNNNNGG	2 cut(s)	403, 482
AflII	CTTAAG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	712
AgsI	TTSAA	4 cut(s)	379, 433, 761, 936
AjnI	CCWGG	3 cut(s)	475, 676, 964
AloI	GAACNNNNNNTCC	2 cut(s)	645, 677
AluBI	AGCT	5 cut(s)	296, 309, 856, 931, 1005
AluI	AGCT	5 cut(s)	296, 309, 856, 931, 1005
Alw21I	GWGCWC	2 cut(s)	30, 311
Alw26I	GTCTC	3 cut(s)	289, 491, 808
AlwI	GGATC	3 cut(s)	77, 573, 688
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	3 cut(s)	413, 473, 736
ApeKI	GCWGC	2 cut(s)	129, 258
ApoI	RAATTY	2 cut(s)	433, 659
AseI	ATTAAT	1 cut(s)	59
Asp700I	GAANNNNTTC	2 cut(s)	374, 538
AspS9I	GGNCC	2 cut(s)	413, 473
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	4 cut(s)	160, 872, 954, 1012
AsuII	TTCGAA	1 cut(s)	919
BanI	GGYRCC	1 cut(s)	912
BanII	GRGCYC	1 cut(s)	311
BbsI	GAAGAC	2 cut(s)	49, 224
Bbv12I	GWGCWC	2 cut(s)	30, 311
BbvCI	CCTCAGC	2 cut(s)	203, 268
BbvI	GCAGC	2 cut(s)	116, 245
BccI	CCATC	5 cut(s)	115, 404, 554, 769, 971
BciT130I	CCWGG	3 cut(s)	477, 678, 966
BciVI	GTATCC	1 cut(s)	622
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	3 cut(s)	289, 491, 808
BfaI	CTAG	2 cut(s)	528, 857
BfrI	CTTAAG	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	130, 259, 673
BlpI	GCTNAGC	1 cut(s)	310
BlsI	GCNGC	3 cut(s)	131, 260, 674
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	4 cut(s)	477, 626, 678, 966
BmgT120I	GGNCC	2 cut(s)	413, 473
BmiI	GGNNCC	1 cut(s)	914
BmrFI	CCNGG	4 cut(s)	477, 626, 678, 966
BmsI	GCATC	1 cut(s)	996
BpiI	GAAGAC	2 cut(s)	49, 224
Bpu10I	CCTNAGC	2 cut(s)	203, 268
Bpu1102I	GCTNAGC	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	2 cut(s)	181, 872
BpuMI	CCSGG	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	397, 676, 965
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 482
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	1 cut(s)	889
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	477, 678, 966
BseDI	CCNNGG	3 cut(s)	397, 676, 965
BseGI	GGATG	4 cut(s)	107, 191, 466, 582
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	2 cut(s)	403, 482
BseMII	CTCAG	6 cut(s)	36, 217, 282, 300, 324, 504
BseNI	ACTGG	1 cut(s)	889
BseRI	GAGGAG	3 cut(s)	136, 143, 146
BseXI	GCAGC	2 cut(s)	116, 245
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	415, 475, 738
BshNI	GGYRCC	1 cut(s)	912
BsiHKAI	GWGCWC	2 cut(s)	30, 311
BsiSI	CCGG	2 cut(s)	626, 910
BslI	CCNNNNNNNGG	2 cut(s)	403, 482
BsmAI	GTCTC	3 cut(s)	289, 491, 808
BsnI	GGCC	3 cut(s)	415, 475, 738
Bsp119I	TTCGAA	1 cut(s)	919
Bsp1286I	GDGCHC	2 cut(s)	30, 311
Bsp143I	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
Bsp1720I	GCTNAGC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	171, 673
BspANI	GGCC	3 cut(s)	415, 475, 738
BspCNI	CTCAG	6 cut(s)	35, 216, 281, 299, 323, 503
BspLI	GGNNCC	1 cut(s)	914
BspPI	GGATC	3 cut(s)	77, 573, 688
BspT104I	TTCGAA	1 cut(s)	919
BspT107I	GGYRCC	1 cut(s)	912
BspTI	CTTAAG	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	909
BsrI	ACTGG	1 cut(s)	889
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	3 cut(s)	397, 676, 965
BssMI	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	3 cut(s)	477, 678, 966
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	541
BstAFI	CTTAAG	1 cut(s)	667
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	2 cut(s)	294, 505
BstDEI	CTNAG	6 cut(s)	22, 203, 268, 286, 310, 490
BstF5I	GGATG	4 cut(s)	107, 191, 466, 582
BstKTI	GATC	6 cut(s)	85, 303, 568, 683, 788, 949
BstMAI	GTCTC	3 cut(s)	289, 491, 808
BstMBI	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 500
BstNI	CCWGG	3 cut(s)	477, 678, 966
BstNSI	RCATGY	1 cut(s)	716
BstSCI	CCNGG	4 cut(s)	475, 624, 676, 964
BstV1I	GCAGC	2 cut(s)	116, 245
BstV2I	GAAGAC	2 cut(s)	49, 224
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	3 cut(s)	415, 475, 738
BtsCI	GGATG	4 cut(s)	107, 191, 466, 582
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	294, 505
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	2 cut(s)	413, 473
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	882
CviAII	CATG	5 cut(s)	31, 713, 722, 793, 832
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	6 cut(s)	22, 203, 268, 286, 310, 490
DpnI	GATC	6 cut(s)	84, 302, 567, 682, 787, 948
DpnII	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Ecl136II	GAGCTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	309
EcoRI	GAATTC	2 cut(s)	433, 659
EcoRII	CCWGG	3 cut(s)	475, 676, 964
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	5 cut(s)	34, 716, 725, 796, 835
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	5 cut(s)	30, 712, 721, 792, 831
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	130, 259, 673
FokI	GGATG	4 cut(s)	94, 178, 473, 589
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	130, 259, 673
FspBI	CTAG	2 cut(s)	528, 857
GluI	GCNGC	3 cut(s)	130, 259, 673
HaeIII	GGCC	3 cut(s)	415, 475, 738
HapII	CCGG	2 cut(s)	626, 910
HgaI	GACGC	1 cut(s)	584
Hin1II	CATG	5 cut(s)	34, 716, 725, 796, 835
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	1 cut(s)	647
HpaII	CCGG	2 cut(s)	626, 910
HphI	GGTGA	4 cut(s)	160, 872, 954, 1012
Hpy166II	GTNNAC	2 cut(s)	622, 1028
Hpy188I	TCNGA	6 cut(s)	25, 76, 248, 652, 685, 790
Hpy188III	TCNNGA	6 cut(s)	304, 367, 458, 543, 644, 731
Hpy8I	GTNNAC	2 cut(s)	622, 1028
HpyAV	CCTTC	3 cut(s)	317, 728, 926
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4V	TGCA	4 cut(s)	132, 261, 440, 987
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 500
HpyF3I	CTNAG	6 cut(s)	22, 203, 268, 286, 310, 490
Hsp92II	CATG	5 cut(s)	34, 716, 725, 796, 835
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
LmnI	GCTCC	2 cut(s)	306, 592
Lsp1109I	GCAGC	2 cut(s)	116, 245
LweI	GCATC	1 cut(s)	996
MaeI	CTAG	2 cut(s)	528, 857
MaeIII	GTNAC	1 cut(s)	951
MalI	GATC	6 cut(s)	84, 302, 567, 682, 787, 948
MboI	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	30, 311
MluCI	AATT	6 cut(s)	56, 433, 480, 659, 867, 924
MmeI	TCCRAC	1 cut(s)	186
MroXI	GAANNNNTTC	2 cut(s)	374, 538
MseI	TTAA	5 cut(s)	59, 351, 668, 890, 927
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	667
MspI	CCGG	2 cut(s)	626, 910
MspR9I	CCNGG	4 cut(s)	477, 626, 678, 966
MvaI	CCWGG	3 cut(s)	477, 678, 966
MwoI	GCNNNNNNNGC	2 cut(s)	258, 500
NciI	CCSGG	1 cut(s)	626
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
NlaIII	CATG	5 cut(s)	34, 716, 725, 796, 835
NlaIV	GGNNCC	1 cut(s)	914
NmuCI	GTSAC	1 cut(s)	951
NspI	RCATGY	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	919
PceI	AGGCCT	1 cut(s)	738
PciI	ACATGT	1 cut(s)	712
PdmI	GAANNNNTTC	2 cut(s)	374, 538
PfeI	GAWTC	1 cut(s)	647
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	131, 260, 674
PscI	ACATGT	1 cut(s)	712
PshBI	ATTAAT	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	311
Psp6I	CCWGG	3 cut(s)	475, 676, 964
PspGI	CCWGG	3 cut(s)	475, 676, 964
PspN4I	GGNNCC	1 cut(s)	914
PspPI	GGNCC	2 cut(s)	413, 473
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
SacI	GAGCTC	1 cut(s)	311
SaqAI	TTAA	5 cut(s)	59, 351, 668, 890, 927
SatI	GCNGC	3 cut(s)	130, 259, 673
Sau3AI	GATC	6 cut(s)	82, 300, 565, 680, 785, 946
Sau96I	GGNCC	2 cut(s)	413, 473
ScaI	AGTACT	1 cut(s)	883
ScrFI	CCNGG	4 cut(s)	477, 626, 678, 966
SduI	GDGCHC	2 cut(s)	30, 311
SfaNI	GCATC	1 cut(s)	996
SfuI	TTCGAA	1 cut(s)	919
SmlI	CTYRAG	3 cut(s)	196, 667, 851
SmoI	CTYRAG	3 cut(s)	196, 667, 851
Sse9I	AATT	6 cut(s)	56, 433, 480, 659, 867, 924
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	171, 673
SspMI	CTAG	2 cut(s)	528, 857
SstI	GAGCTC	1 cut(s)	311
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	4 cut(s)	475, 624, 676, 964
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	619
TaqI	TCGA	2 cut(s)	709, 919
TaqII	GACCGA	1 cut(s)	939
TasI	AATT	6 cut(s)	56, 433, 480, 659, 867, 924
TatI	WGTACW	1 cut(s)	881
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	5 cut(s)	59, 351, 668, 890, 927
Tru9I	TTAA	5 cut(s)	59, 351, 668, 890, 927
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	951
TseI	GCWGC	2 cut(s)	129, 258
Tsp45I	GTSAC	1 cut(s)	951
TspDTI	ATGAA	4 cut(s)	47, 198, 350, 593
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	403
Vha464I	CTTAAG	1 cut(s)	667
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	2 cut(s)	433, 659
XceI	RCATGY	1 cut(s)	716
XmnI	GAANNNNTTC	2 cut(s)	374, 538
XspI	CTAG	2 cut(s)	528, 857
ZrmI	AGTACT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.