Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Forward (+)

23004292 .. 23006694

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCCTCTCACAGAGAGCTCAACTGCAGGAGCAGAGCACATGAAATGGAGAAGACCCAGAACCCAATTCAACCAACCCATTTCAGAAACGGATCCAGCCACCTCCCCCCTCCAGTCCACCCGCTGCAAATCTACCATCTCCTCCCTCCTCCTCTCCAGCTTCACCACCTCCACCAACAACGAAGCCTTACCCACAAGCCTTACCATCAAGAAAAAGACAAACTTTCCCTCGTCGTCGTTCAGAGGCATGGGCTGCGCCGCCTCCGCCTCGCAGCAAGTCTCGGTGCCGGAGGAGATTCGGAACTCCGCCGATTGGAAGGGAAAGAAGGTGAAGAAGAAAAAGGAGAAGAAGAGCGCCGCCGCCAAGGGCAGCGCAAGCAATGAGAAGAATGAATACCGGGATGTCGGTGATGGCGGGCCCACCATTGGTATAAATTCTGCAACTTGTATGGATTTTCAGGATGTTTGGTGCGGCCCCGGAATTGGGTTCTCGCCGGAAACTGCCGGCTCGGTGGATTGCGTGGTGGCGAGGAGGAATGTCTCCGGCAGAGGCAAGATTTATGGGGATAATAATAAGATGAGCAGCCACAGGGAGCGTCCTTGTTTCGCAAGGCGAAACGTGAGCCCTGAAACCATCTCGTTTCTGGATTCTGAACCGGATTTTGTCTCGAGCCACCCTGAATCAGAGGTATTTGGAAGTAGGTGTTTTCGGCATGTCCGGCATCCATCCCCTGAAGGCCTTGCAGAGATTATGCTGTTTCAAAGTAGTCTTATGATGGGTGGAAGAATGGATAGATTCCGTGACTGGAGACTCGATGTTGATAGCATGTCATATGAGCAACTGCTCGAGTTAGGCGAGAGAATGGGCCACGTGAGTACTGGATTAAAAGAAGATGAAATAAACCACTGCCTTCGAAAGATTAAGCTTCCAATGTCGAGTGACGCGGCATCACATTCATCTGGGAAAGTAGATAGCAAATGCATCATTTGTCAGGAGGAGTATGAAGCAGATGACGAGATGGGCAAACTGCACTGCGGACATAACTTCCACTTACAATGTATAAAACAGTGGCTCACACAAAAGAATACGTGCCCTTTCTGCAAGGTCGAAGCAATATCTAGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

376

Amino Acids

41.6

Weight (kDa)

8.44

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	1 cut(s)	944
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	753
AcvI	CACGTG	1 cut(s)	871
AfaI	GTAC	1 cut(s)	877
AfiI	CCNNNNNNNGG	4 cut(s)	312, 425, 482, 483
AgsI	TTSAA	2 cut(s)	70, 761
AluBI	AGCT	3 cut(s)	18, 159, 925
AluI	AGCT	3 cut(s)	18, 159, 925
Alw21I	GWGCWC	2 cut(s)	20, 39
Alw26I	GTCTC	4 cut(s)	283, 544, 670, 802
AlwI	GGATC	2 cut(s)	86, 99
Ama87I	CYCGRG	2 cut(s)	667, 845
AoxI	GGCC	4 cut(s)	416, 472, 736, 865
ApaI	GGGCCC	1 cut(s)	420
ApeKI	GCWGC	5 cut(s)	123, 252, 271, 369, 582
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	3 cut(s)	257, 356, 374
AspS9I	GGNCC	4 cut(s)	416, 417, 473, 865
AsuC2I	CCSGG	2 cut(s)	398, 477
AsuHPI	GGTGA	3 cut(s)	154, 340, 419
AsuII	TTCGAA	1 cut(s)	913
AvaI	CYCGRG	2 cut(s)	667, 845
BaeGI	GKGCMC	2 cut(s)	420, 1094
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	3 cut(s)	20, 420, 626
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
BbrPI	CACGTG	1 cut(s)	871
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	20, 39
BbvI	GCAGC	5 cut(s)	110, 239, 283, 381, 594
BccI	CCATC	7 cut(s)	143, 212, 404, 641, 733, 769, 1012
BcnI	CCSGG	2 cut(s)	398, 477
BcoDI	GTCTC	4 cut(s)	283, 544, 670, 802
BfaI	CTAG	2 cut(s)	1119, 1126
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	877
Bme1390I	CCNGG	2 cut(s)	398, 477
BmeT110I	CYCGRG	2 cut(s)	667, 845
BmgT120I	GGNCC	4 cut(s)	416, 417, 473, 865
BmiI	GGNNCC	4 cut(s)	93, 285, 418, 475
BmrFI	CCNGG	2 cut(s)	398, 477
BmsI	GCATC	4 cut(s)	730, 956, 990, 1112
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	3 cut(s)	95, 139, 826
Bpu14I	TTCGAA	1 cut(s)	913
BpuMI	CCSGG	2 cut(s)	398, 477
BsaAI	YACGTR	2 cut(s)	871, 1089
BsaJI	CCNNGG	2 cut(s)	363, 475
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	4 cut(s)	312, 425, 482, 483
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	3 cut(s)	112, 809, 883
Bse3DI	GCAATG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	363, 475
BseGI	GGATG	4 cut(s)	406, 466, 721, 725
BseLI	CCNNNNNNNGG	4 cut(s)	312, 425, 482, 483
BseMI	GCAATG	1 cut(s)	385
BseNI	ACTGG	3 cut(s)	112, 809, 883
BseRI	GAGGAG	6 cut(s)	130, 137, 140, 305, 544, 1010
BseSI	GKGCMC	2 cut(s)	420, 1094
BseXI	GCAGC	5 cut(s)	110, 239, 283, 381, 594
BsgI	GTGCAG	1 cut(s)	1013
Bsh1236I	CGCG	1 cut(s)	944
BshFI	GGCC	4 cut(s)	418, 474, 738, 867
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	20, 39
BsiHKCI	CYCGRG	2 cut(s)	667, 845
BsiSI	CCGG	8 cut(s)	287, 397, 477, 494, 504, 543, 656, 718
BslI	CCNNNNNNNGG	4 cut(s)	312, 425, 482, 483
BsmAI	GTCTC	4 cut(s)	283, 544, 670, 802
BsnI	GGCC	4 cut(s)	418, 474, 738, 867
BsoBI	CYCGRG	2 cut(s)	667, 845
Bsp119I	TTCGAA	1 cut(s)	913
Bsp120I	GGGCCC	1 cut(s)	416
Bsp1286I	GDGCHC	5 cut(s)	20, 39, 420, 626, 1094
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	4 cut(s)	418, 474, 738, 867
BspFNI	CGCG	1 cut(s)	944
BspLI	GGNNCC	4 cut(s)	93, 285, 418, 475
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	86, 99
BspQI	GCTCTTC	1 cut(s)	344
BspT104I	TTCGAA	1 cut(s)	913
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	112, 809, 883
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	2 cut(s)	363, 475
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	1068
Bst6I	CTCTTC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstBAI	YACGTR	2 cut(s)	871, 1089
BstBI	TTCGAA	1 cut(s)	913
BstC8I	GCNNGC	3 cut(s)	376, 416, 505
BstF5I	GGATG	4 cut(s)	406, 466, 721, 725
BstFNI	CGCG	1 cut(s)	944
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	3 cut(s)	257, 356, 374
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	4 cut(s)	283, 544, 670, 802
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 263, 375, 718, 1098
BstNSI	RCATGY	2 cut(s)	716, 829
BstSCI	CCNGG	2 cut(s)	396, 475
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	420, 1094
BstUI	CGCG	1 cut(s)	944
BstV1I	GCAGC	5 cut(s)	110, 239, 283, 381, 594
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	4 cut(s)	418, 474, 738, 867
BtsCI	GGATG	4 cut(s)	406, 466, 721, 725
BtsI	GCAGTG	2 cut(s)	904, 1030
BtsIMutI	CAGTG	3 cut(s)	904, 1030, 1073
Cac8I	GCNNGC	3 cut(s)	376, 416, 505
CfoI	GCGC	3 cut(s)	257, 356, 374
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	4 cut(s)	416, 417, 473, 865
CseI	GACGC	2 cut(s)	584, 950
Csp6I	GTAC	1 cut(s)	876
CviAII	CATG	4 cut(s)	40, 247, 713, 826
CviQI	GTAC	1 cut(s)	876
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	2 cut(s)	253, 295
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	3 cut(s)	20, 420, 626
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	753
Eco72I	CACGTG	1 cut(s)	871
Eco88I	CYCGRG	2 cut(s)	667, 845
EcoICRI	GAGCTC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	983
EcoT38I	GRGCYC	3 cut(s)	20, 420, 626
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	43, 250, 716, 829
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FatI	CATG	4 cut(s)	39, 246, 712, 825
FauI	CCCGC	2 cut(s)	128, 407
FauNDI	CATATG	1 cut(s)	832
FokI	GGATG	4 cut(s)	413, 473, 708, 712
FriOI	GRGCYC	3 cut(s)	20, 420, 626
FspBI	CTAG	2 cut(s)	1119, 1126
GlaI	GCGC	3 cut(s)	256, 355, 373
GsuI	CTGGAG	3 cut(s)	95, 139, 826
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	418, 474, 738, 867
HapII	CCGG	8 cut(s)	287, 397, 477, 494, 504, 543, 656, 718
HgaI	GACGC	2 cut(s)	584, 950
HhaI	GCGC	3 cut(s)	257, 356, 374
Hin1II	CATG	4 cut(s)	43, 250, 716, 829
Hin6I	GCGC	3 cut(s)	255, 354, 372
HinP1I	GCGC	3 cut(s)	255, 354, 372
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	5 cut(s)	295, 647, 680, 795, 810
HpaII	CCGG	8 cut(s)	287, 397, 477, 494, 504, 543, 656, 718
HphI	GGTGA	3 cut(s)	154, 340, 419
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	5 cut(s)	85, 242, 300, 652, 685
Hpy188III	TCNNGA	6 cut(s)	208, 458, 644, 667, 992, 1119
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	2 cut(s)	235, 238
HpyAV	CCTTC	4 cut(s)	310, 319, 728, 920
HpyCH4III	ACNGT	1 cut(s)	1068
HpyCH4IV	ACGT	3 cut(s)	618, 870, 1088
HpyCH4V	TGCA	7 cut(s)	26, 126, 440, 743, 981, 1030, 1101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 263, 375, 718, 1098
HpySE526I	ACGT	3 cut(s)	618, 870, 1088
Hsp92II	CATG	4 cut(s)	43, 250, 716, 829
HspAI	GCGC	3 cut(s)	255, 354, 372
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	2 cut(s)	29, 592
Lsp1109I	GCAGC	5 cut(s)	110, 239, 283, 381, 594
LweI	GCATC	4 cut(s)	730, 956, 990, 1112
MaeI	CTAG	2 cut(s)	1119, 1126
MaeII	ACGT	3 cut(s)	618, 870, 1088
MaeIII	GTNAC	2 cut(s)	800, 938
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	8 cut(s)	63, 343, 346, 358, 361, 397, 795, 902
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	5 cut(s)	20, 39, 420, 626, 1094
MluCI	AATT	3 cut(s)	65, 433, 480
MlyI	GAGTC	1 cut(s)	804
Mph1103I	ATGCAT	1 cut(s)	983
MroNI	GCCGGC	1 cut(s)	503
MseI	TTAA	2 cut(s)	884, 921
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	8 cut(s)	287, 397, 477, 494, 504, 543, 656, 718
MspR9I	CCNGG	2 cut(s)	398, 477
MvnI	CGCG	1 cut(s)	944
MwoI	GCNNNNNNNGC	5 cut(s)	252, 263, 375, 718, 1098
NaeI	GCCGGC	1 cut(s)	505
NciI	CCSGG	2 cut(s)	398, 477
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	1 cut(s)	91
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	4 cut(s)	43, 250, 716, 829
NlaIV	GGNNCC	4 cut(s)	93, 285, 418, 475
NmuCI	GTSAC	2 cut(s)	800, 938
NsiI	ATGCAT	1 cut(s)	983
NspI	RCATGY	2 cut(s)	716, 829
NspV	TTCGAA	1 cut(s)	913
PaeR7I	CTCGAG	2 cut(s)	667, 845
PceI	AGGCCT	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PdiI	GCCGGC	1 cut(s)	505
PfeI	GAWTC	4 cut(s)	295, 647, 680, 795
PleI	GAGTC	1 cut(s)	804
PmaCI	CACGTG	1 cut(s)	871
PmlI	CACGTG	1 cut(s)	871
PpsI	GAGTC	1 cut(s)	804
Ppu21I	YACGTR	2 cut(s)	871, 1089
Psp124BI	GAGCTC	1 cut(s)	20
PspCI	CACGTG	1 cut(s)	871
PspN4I	GGNNCC	4 cut(s)	93, 285, 418, 475
PspOMI	GGGCCC	1 cut(s)	416
PspPI	GGNCC	4 cut(s)	416, 417, 473, 865
PspXI	VCTCGAGB	1 cut(s)	845
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	877
RsaNI	GTAC	1 cut(s)	876
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	884, 921
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	4 cut(s)	416, 417, 473, 865
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	1 cut(s)	804
ScrFI	CCNGG	2 cut(s)	398, 477
SduI	GDGCHC	5 cut(s)	20, 39, 420, 626, 1094
SfaNI	GCATC	4 cut(s)	730, 956, 990, 1112
SfcI	CTRYAG	1 cut(s)	24
Sfr274I	CTCGAG	2 cut(s)	667, 845
SfuI	TTCGAA	1 cut(s)	913
SlaI	CTCGAG	2 cut(s)	667, 845
SmlI	CTYRAG	2 cut(s)	667, 845
SmoI	CTYRAG	2 cut(s)	667, 845
Sse9I	AATT	3 cut(s)	65, 433, 480
SseBI	AGGCCT	1 cut(s)	738
SspMI	CTAG	2 cut(s)	1119, 1126
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	396, 475
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	1068
TaiI	ACGT	3 cut(s)	621, 873, 1091
TaqI	TCGA	6 cut(s)	668, 813, 846, 913, 935, 1107
TasI	AATT	3 cut(s)	65, 433, 480
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	5 cut(s)	260, 359, 362, 474, 947
TfiI	GAWTC	4 cut(s)	295, 647, 680, 795
Tru1I	TTAA	2 cut(s)	884, 921
Tru9I	TTAA	2 cut(s)	884, 921
TscAI	CASTG	3 cut(s)	911, 1037, 1073
TseFI	GTSAC	2 cut(s)	800, 938
TseI	GCWGC	5 cut(s)	123, 252, 271, 369, 582
Tsp45I	GTSAC	2 cut(s)	800, 938
TspDTI	ATGAA	5 cut(s)	56, 405, 909, 945, 1017
TspGWI	ACGGA	2 cut(s)	104, 788
TspRI	CASTG	3 cut(s)	911, 1037, 1073
XapI	RAATTY	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	1118
XceI	RCATGY	2 cut(s)	716, 829
XcmI	CCANNNNNNNNNTGG	2 cut(s)	640, 875
XhoI	CTCGAG	2 cut(s)	667, 845
XspI	CTAG	2 cut(s)	1119, 1126
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	1 cut(s)	983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.