Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Forward (+)

9540002 .. 9544445

Gene Structure 4444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCCTGTTCTTTCAGAGAGCTCAGAGCACATGAAATGGAGAAGACCCAGAAGCCAACTAATCCAGCCCATTTCAGAAACAGATCCATACGTCCCAAATCCAGCACCTTCCATCCTCCAATCCACTCGCTGCAAATCCACAATCTCCTCCCTTCTTCTTTCCAGCTTCACCACCACCAATGAAGCCTCATCCTCATCCTCAAGCCTCACCAATAAGAAAAAGACAAACTTTCCATCCTCAGCAAAGTTCAGAGGCTTGGGCTGCACAGCCTCAGCCTCACAGCAAGTCTCAGTGCCAGCTGTGATAAGGAGCTCTGCAGACTGGGAAGGAGAGAAGAAGGTGAAAAAGAAGAAGAAGAAGAAGAATGTGAGGAGTGAGTACAAGGACAAGAGCCAGAACCAAGGAGGAGTAGATGGATTGAACTCTGTAGCTTGTATGGATTTTCAGGATGTTTGGTGTGGGCCTGGAATTGGGTTCTCAGCTGAGACTGCTGGCTCTGTGGATTGTGTTGTGGCTAGGAGAAATGTTTCTGGCAGAGGCAAGATTGATGGGGATCATATCAGGATGAACAGCCACCACAGGGAGCGTCCTTATTTAGCAAGGAGAACTGTGAGCCCGGATACTATCTCGTTTCTTGATTCTGAACCTGAATTTCTCATAAGCCGCCCCGGATCAGAAGTGTTTGGAAGTAGGTGTTATCGACATGTTCGCCATGCCTCTCCTGAAGGCCTCGCTGAGATTATGATGTTTCAAAGTAGTCTTATGATGGGTGGAAGATCAGACATGGATAGATATAGGGAATGGAGACTTGATGTTGATAACATGACATATGAGCAACTGCTTGAACTAGGTGAGAGAATTGGTTATGTGAGTACTGGATTAACAAAAGAGGAGATAAGGCGGTGCGTTCAAAAAATTAAGCTTTCAATGTTAAGTGATCAGTCGCAACATGTTAAGTGCATCATTTGTCAGGAGGAATATGAAGCAGATGATGTAGCAGATGAAATGGGTAAAGTACTGAATTGCGGACACGTCTTCCACTTTGAGTGTATAGAACAGTGGCTTGCACATAAAAATACTTGCCCTTTCTGTAAGGTTGAAGCGAAAACTAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

373

Amino Acids

41.77

Weight (kDa)

8.67

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	316 - 365	8.3e-11	RING-H2 zinc finger domain
zf-RING_2	PF13639	319 - 365	7.7e-14	Ring finger domain
zf-C3HC4_2	PF13923	319 - 364	3.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	320 - 364	7.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	320 - 362	2.8e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	664, 901, 1026
AclWI	GGATC	3 cut(s)	77, 561, 679
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	3 cut(s)	380, 874, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	470, 580
AflIII	ACRYGT	3 cut(s)	703, 949, 1030
AgsI	TTSAA	6 cut(s)	421, 752, 845, 911, 927, 1100
AjiI	CACGTC	1 cut(s)	1033
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	7 cut(s)	21, 165, 299, 312, 431, 482, 922
AluI	AGCT	7 cut(s)	21, 165, 299, 312, 431, 482, 922
Alw21I	GWGCWC	3 cut(s)	23, 30, 314
Alw26I	GTCTC	3 cut(s)	292, 479, 799
AlwI	GGATC	3 cut(s)	77, 561, 679
AoxI	GGCC	2 cut(s)	461, 727
ApeKI	GCWGC	2 cut(s)	129, 261
ApoI	RAATTY	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	2 cut(s)	617, 669
AsuHPI	GGTGA	4 cut(s)	160, 199, 352, 863
BanII	GRGCYC	3 cut(s)	23, 314, 617
BbsI	GAAGAC	2 cut(s)	49, 1027
Bbv12I	GWGCWC	3 cut(s)	23, 30, 314
BbvCI	CCTCAGC	2 cut(s)	238, 271
BbvI	GCAGC	2 cut(s)	116, 248
BccI	CCATC	5 cut(s)	119, 241, 407, 542, 760
BciT130I	CCWGG	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	613
BclI	TGATCA	1 cut(s)	937
BcnI	CCSGG	2 cut(s)	617, 669
BcoDI	GTCTC	3 cut(s)	292, 479, 799
BfaI	CTAG	3 cut(s)	516, 848, 1117
BfmI	CTRYAG	2 cut(s)	315, 426
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	3 cut(s)	130, 262, 664
BlsI	GCNGC	3 cut(s)	131, 263, 665
BmcAI	AGTACT	2 cut(s)	874, 1017
Bme1390I	CCNGG	3 cut(s)	465, 617, 669
BmgBI	CACGTC	1 cut(s)	1033
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	3 cut(s)	465, 617, 669
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	969
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	49, 1027
Bpu10I	CCTNAGC	2 cut(s)	238, 271
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	2 cut(s)	617, 669
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	400, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 580
Bse1I	ACTGG	2 cut(s)	326, 880
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	400, 667
BseGI	GGATG	6 cut(s)	111, 188, 194, 233, 454, 570
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	470, 580
BseMII	CTCAG	7 cut(s)	36, 252, 285, 303, 474, 492, 726
BseNI	ACTGG	2 cut(s)	326, 880
BseRI	GAGGAG	4 cut(s)	136, 385, 420, 905
BseXI	GCAGC	2 cut(s)	116, 248
BsgI	GTGCAG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	463, 729
BsiHKAI	GWGCWC	3 cut(s)	23, 30, 314
BsiSI	CCGG	2 cut(s)	617, 669
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	470, 580
BsmAI	GTCTC	3 cut(s)	292, 479, 799
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	463, 729
Bsp1286I	GDGCHC	4 cut(s)	23, 30, 314, 617
Bsp143I	GATC	5 cut(s)	82, 553, 671, 776, 937
BspACI	CCGC	3 cut(s)	664, 901, 1026
BspANI	GGCC	2 cut(s)	463, 729
BspCNI	CTCAG	7 cut(s)	35, 251, 284, 302, 475, 491, 727
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	3 cut(s)	77, 561, 679
BsrI	ACTGG	2 cut(s)	326, 880
BssECI	CCNNGG	2 cut(s)	400, 667
BssMI	GATC	5 cut(s)	82, 553, 671, 776, 937
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	610, 1059
BstC8I	GCNNGC	3 cut(s)	297, 493, 1065
BstDEI	CTNAG	7 cut(s)	22, 238, 271, 289, 478, 483, 735
BstF5I	GGATG	6 cut(s)	111, 188, 194, 233, 454, 570
BstKTI	GATC	5 cut(s)	85, 556, 674, 779, 940
BstMAI	GTCTC	3 cut(s)	292, 479, 799
BstMBI	GATC	5 cut(s)	82, 553, 671, 776, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 488
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	2 cut(s)	707, 953
BstSCI	CCNGG	3 cut(s)	463, 615, 667
BstSFI	CTRYAG	2 cut(s)	315, 426
BstV1I	GCAGC	2 cut(s)	116, 248
BstV2I	GAAGAC	2 cut(s)	49, 1027
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	463, 729
BtrI	CACGTC	1 cut(s)	1033
BtsCI	GGATG	6 cut(s)	111, 188, 194, 233, 454, 570
BtsIMutI	CAGTG	2 cut(s)	297, 1064
Cac8I	GCNNGC	3 cut(s)	297, 493, 1065
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	3 cut(s)	379, 873, 1016
CviAII	CATG	6 cut(s)	31, 704, 713, 784, 823, 950
CviQI	GTAC	3 cut(s)	379, 873, 1016
DdeI	CTNAG	7 cut(s)	22, 238, 271, 289, 478, 483, 735
DpnI	GATC	5 cut(s)	84, 555, 673, 778, 939
DpnII	GATC	5 cut(s)	82, 553, 671, 776, 937
Ecl136II	GAGCTC	2 cut(s)	21, 312
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	729
Eco24I	GRGCYC	3 cut(s)	23, 314, 617
Eco53kI	GAGCTC	2 cut(s)	21, 312
Eco57I	CTGAAG	1 cut(s)	744
EcoICRI	GAGCTC	2 cut(s)	21, 312
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	3 cut(s)	23, 314, 617
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	6 cut(s)	34, 707, 716, 787, 826, 953
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	6 cut(s)	30, 703, 712, 783, 822, 949
FauNDI	CATATG	1 cut(s)	829
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	3 cut(s)	130, 262, 664
FokI	GGATG	6 cut(s)	98, 175, 181, 220, 461, 577
FriOI	GRGCYC	3 cut(s)	23, 314, 617
Fsp4HI	GCNGC	3 cut(s)	130, 262, 664
FspBI	CTAG	3 cut(s)	516, 848, 1117
GluI	GCNGC	3 cut(s)	130, 262, 664
HaeIII	GGCC	2 cut(s)	463, 729
HapII	CCGG	2 cut(s)	617, 669
HgaI	GACGC	1 cut(s)	575
Hin1II	CATG	6 cut(s)	34, 707, 716, 787, 826, 953
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	1 cut(s)	638
HpaII	CCGG	2 cut(s)	617, 669
HphI	GGTGA	4 cut(s)	160, 199, 352, 863
Hpy188I	TCNGA	7 cut(s)	16, 25, 76, 251, 643, 676, 781
Hpy188III	TCNNGA	5 cut(s)	446, 562, 635, 722, 971
HpyAV	CCTTC	5 cut(s)	117, 161, 320, 331, 719
HpyCH4III	ACNGT	2 cut(s)	610, 1059
HpyCH4IV	ACGT	2 cut(s)	90, 1032
HpyCH4V	TGCA	5 cut(s)	132, 264, 317, 960, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 488
HpyF3I	CTNAG	7 cut(s)	22, 238, 271, 289, 478, 483, 735
HpySE526I	ACGT	2 cut(s)	90, 1032
Hsp92II	CATG	6 cut(s)	34, 707, 716, 787, 826, 953
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	5 cut(s)	82, 553, 671, 776, 937
LmnI	GCTCC	2 cut(s)	309, 583
Lsp1109I	GCAGC	2 cut(s)	116, 248
LweI	GCATC	1 cut(s)	969
MaeI	CTAG	3 cut(s)	516, 848, 1117
MaeII	ACGT	2 cut(s)	90, 1032
MalI	GATC	5 cut(s)	84, 555, 673, 778, 939
MboI	GATC	5 cut(s)	82, 553, 671, 776, 937
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	4 cut(s)	23, 30, 314, 617
MluCI	AATT	5 cut(s)	468, 650, 858, 915, 1021
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	4 cut(s)	881, 918, 932, 954
MspA1I	CMGCKG	2 cut(s)	299, 482
MspI	CCGG	2 cut(s)	617, 669
MspR9I	CCNGG	3 cut(s)	465, 617, 669
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	261, 488
NciI	CCSGG	2 cut(s)	617, 669
NdeI	CATATG	1 cut(s)	829
NdeII	GATC	5 cut(s)	82, 553, 671, 776, 937
NlaIII	CATG	6 cut(s)	34, 707, 716, 787, 826, 953
NspI	RCATGY	2 cut(s)	707, 953
PceI	AGGCCT	1 cut(s)	729
PciI	ACATGT	2 cut(s)	703, 949
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	131, 263, 665
PscI	ACATGT	2 cut(s)	703, 949
Psp124BI	GAGCTC	2 cut(s)	23, 314
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	2 cut(s)	299, 482
RsaI	GTAC	3 cut(s)	380, 874, 1017
RsaNI	GTAC	3 cut(s)	379, 873, 1016
SacI	GAGCTC	2 cut(s)	23, 314
SaqAI	TTAA	4 cut(s)	881, 918, 932, 954
SatI	GCNGC	3 cut(s)	130, 262, 664
Sau3AI	GATC	5 cut(s)	82, 553, 671, 776, 937
Sau96I	GGNCC	1 cut(s)	461
ScaI	AGTACT	2 cut(s)	874, 1017
ScrFI	CCNGG	3 cut(s)	465, 617, 669
SduI	GDGCHC	4 cut(s)	23, 30, 314, 617
SfaNI	GCATC	1 cut(s)	969
SfcI	CTRYAG	2 cut(s)	315, 426
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	468, 650, 858, 915, 1021
SseBI	AGGCCT	1 cut(s)	729
SsiI	CCGC	3 cut(s)	664, 901, 1026
SspMI	CTAG	3 cut(s)	516, 848, 1117
SstI	GAGCTC	2 cut(s)	23, 314
StuI	AGGCCT	1 cut(s)	729
StyD4I	CCNGG	3 cut(s)	463, 615, 667
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	610, 1059
TaiI	ACGT	2 cut(s)	93, 1035
TaqI	TCGA	1 cut(s)	700
TasI	AATT	5 cut(s)	468, 650, 858, 915, 1021
TatI	WGTACW	3 cut(s)	378, 872, 1015
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	4 cut(s)	881, 918, 932, 954
Tru9I	TTAA	4 cut(s)	881, 918, 932, 954
TscAI	CASTG	2 cut(s)	297, 1064
TseI	GCWGC	2 cut(s)	129, 261
TspDTI	ATGAA	5 cut(s)	47, 195, 581, 996, 1017
TspRI	CASTG	2 cut(s)	297, 1064
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	2 cut(s)	707, 953
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	3 cut(s)	516, 848, 1117
ZrmI	AGTACT	2 cut(s)	874, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.