Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007225

Physical Location & Seq

Genomic Coordinates Forward (+)

17407358 .. 17410135

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G225100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCCTGTTGTCACGGAGAGCTCAACAACAGTGGCAGAGCACATCAAATGGAGAAGACCCAGAAGCCAATTCAGCCCACCCATTTCGGATACAGATCCAACTCCCTCCATTATCCAATCTACTCGATGCAAATCCACCATCTCCTCTCTCCTCCTCTCCAGCTTCACCACCAACACCAACGAAACCTTACCCACAAGCCTCAACAACAAGAAAAAGACAAACTTTTCCTCATCAACATTCAGAGGCTTGGGTTGTGCAGCCTCTGCCTCACAACAAGTCTCAGTTCCAGCAGTGATTCGGAACTCCGCTGATTGGCAAGGAAAGAAGGTAAAGAAGAAAAAACAAAAGAAGAATATCAACACCAAGAACAATACAAGCAATGACAAGAATGAATACAAGGATAAGACCCAGCACCAAGGAGCGGTTGATGGGCCTAGCTTTGGTTTAAATTCTGCAACTTGTATGGATTTTCAAGATGTCTGGTGCGGTCCTGGAATTGGGTTCTCAGCAGAAACTGCTGGTTCTGTGGATTGTGTTGTGGCTAGGAGGAATGTCTCTGGTAGAGGCAAGATTGATGGGGATAAACTGAGCAGCCACAGGGAGCGTCCTTGTTTAGCAAGGCGAACTGTGAGCCCAGAAACTGTCTCGTTTCTGGATTCTGAACCTGATTTTGTCACGAGCCGTCCTGAATCAGAGGTCTTTGGAGGTAGGTGTTATCGGCATGTTCGGCATCCATCCCCTGAAGGCCTTGCAGAGATTATGCTGTTTCAAAGTAGTCTTCTAATGGGTGGAAGACTTGATCGATTTAGGGACTGGAGACTTGATGTTGATAACATGTCATATGAGGAGCTGCTCGAGTTAGGTGATAGAATTGGTCATGTGAGTACTGGATTAAAAGAACATGAAATAAGCTGCTGCCTTCGAAAAATTAAGCTTTCAATGTTGAGTGATCTGTCACCACATTCATTGGGGCAAGTTGATAGGAAATGCATCATTTGTCAAGAGGAGTATGAAGTAGCAGATGATCTGGGCAGCCTGCATTGTGGACATAACTTCCACTTACAATGTATAAAACAGTGGCTTGCACAAAAGAATACTTGCCCTTTTTGTAAGGTTGAAGCAATATCTAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

379

Amino Acids

42.04

Weight (kDa)

8.72

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17970 AT1G17970 AT1G73760 AT1G73760
fragaria_vesca	FvH4_5g16700 FvH4_5g16700
malus_domestica	MD06G1220700.v1.1 MD14G1230200.v1.1
prunus_persica	Prupe.5G225100_v2.0.a1 Prupe.5G225100_v2.0.a1
pyrus_communis	pycom06g19660 pycom14g19150
rosa_chinensis	RchiOBHm_Chr7g0179401
rosa_laevigata	RLG00000005359
rosa_multiflora	Rmu_co8089052.1_g000001 Rmu_co8438249.1_g000001 Rmu_sc0002581.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274060
rosa_rugosa	Rorug06G0424100 Rorug06G0424200
rosa_samantha	Rh7AG023500 Rh7BG023100 Rh7CG024500 Rh7DG024000
rosa_wichuraiana	Rw7G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	422
AciI	CCGC	3 cut(s)	306, 422, 486
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	1 cut(s)	886
AfiI	CCNNNNNNNGG	4 cut(s)	312, 421, 440, 497
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	4 cut(s)	473, 770, 939, 1118
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	6 cut(s)	21, 162, 438, 850, 912, 934
AluI	AGCT	6 cut(s)	21, 162, 438, 850, 912, 934
Alw21I	GWGCWC	2 cut(s)	23, 42
Alw26I	GTCTC	4 cut(s)	283, 559, 649, 811
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	3 cut(s)	263, 515, 641
Ama87I	CYCGRG	1 cut(s)	854
AoxI	GGCC	2 cut(s)	431, 745
ApeKI	GCWGC	6 cut(s)	257, 591, 850, 912, 915, 1032
ApoI	RAATTY	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	431, 488
AsuHPI	GGTGA	3 cut(s)	157, 875, 948
AsuII	TTCGAA	1 cut(s)	922
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	488
BanII	GRGCYC	2 cut(s)	23, 635
BauI	CACGAG	1 cut(s)	676
BbsI	GAAGAC	3 cut(s)	61, 770, 799
Bbv12I	GWGCWC	2 cut(s)	23, 42
BbvI	GCAGC	6 cut(s)	269, 603, 837, 899, 902, 1044
BccI	CCATC	4 cut(s)	146, 422, 569, 742
BceAI	ACGGC	1 cut(s)	666
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	82
BcoDI	GTCTC	4 cut(s)	283, 559, 649, 811
BfaI	CTAG	3 cut(s)	435, 543, 1128
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	6 cut(s)	258, 592, 851, 913, 916, 1033
BlsI	GCNGC	6 cut(s)	259, 593, 852, 914, 917, 1034
BmcAI	AGTACT	1 cut(s)	886
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	854
BmgT120I	GGNCC	2 cut(s)	431, 488
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	4 cut(s)	116, 739, 999, 1121
BpiI	GAAGAC	3 cut(s)	61, 770, 799
BpmI	CTGGAG	2 cut(s)	142, 835
Bpu14I	TTCGAA	1 cut(s)	922
Bsa29I	ATCGAT	1 cut(s)	802
BsaBI	GATNNNNATC	2 cut(s)	93, 130
BsaJI	CCNNGG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	4 cut(s)	312, 421, 440, 497
Bse1I	ACTGG	2 cut(s)	818, 892
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	2 cut(s)	93, 130
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	802
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	730, 734
BseJI	GATNNNNATC	2 cut(s)	93, 130
BseLI	CCNNNNNNNGG	4 cut(s)	312, 421, 440, 497
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	294, 519, 578
BseNI	ACTGG	2 cut(s)	818, 892
BseRI	GAGGAG	5 cut(s)	133, 140, 143, 860, 1019
BseXI	GCAGC	6 cut(s)	269, 603, 837, 899, 902, 1044
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	433, 747
BshVI	ATCGAT	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	23, 42
BsiHKCI	CYCGRG	1 cut(s)	854
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	4 cut(s)	312, 421, 440, 497
BsmAI	GTCTC	4 cut(s)	283, 559, 649, 811
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	433, 747
BsoBI	CYCGRG	1 cut(s)	854
Bsp119I	TTCGAA	1 cut(s)	922
Bsp1286I	GDGCHC	3 cut(s)	23, 42, 635
Bsp143I	GATC	4 cut(s)	94, 799, 949, 1024
BspACI	CCGC	3 cut(s)	306, 422, 486
BspANI	GGCC	2 cut(s)	433, 747
BspCNI	CTCAG	3 cut(s)	293, 518, 579
BspDI	ATCGAT	1 cut(s)	802
BspPI	GGATC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	922
BsrBI	CCGCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	2 cut(s)	818, 892
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	4 cut(s)	94, 799, 949, 1024
BssSI	CACGAG	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	4 cut(s)	31, 628, 643, 1077
BstAPI	GCANNNNNTGC	2 cut(s)	263, 515
BstBI	TTCGAA	1 cut(s)	922
BstC8I	GCNNGC	2 cut(s)	1037, 1083
BstDEI	CTNAG	3 cut(s)	280, 505, 587
BstF5I	GGATG	2 cut(s)	730, 734
BstKTI	GATC	4 cut(s)	97, 802, 952, 1027
BstMAI	GTCTC	4 cut(s)	283, 559, 649, 811
BstMBI	GATC	4 cut(s)	94, 799, 949, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 263, 515, 727
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	725, 838
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	6 cut(s)	269, 603, 837, 899, 902, 1044
BstV2I	GAAGAC	3 cut(s)	61, 770, 799
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	433, 747
BsuTUI	ATCGAT	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	730, 734
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	36, 297, 1082
Cac8I	GCNNGC	2 cut(s)	1037, 1083
CaiI	CAGNNNCTG	3 cut(s)	263, 515, 641
Cfr13I	GGNCC	2 cut(s)	431, 488
ClaI	ATCGAT	1 cut(s)	802
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	1 cut(s)	885
CspCI	CAANNNNNGTGG	4 cut(s)	12, 47, 948, 983
CviAII	CATG	4 cut(s)	722, 835, 878, 902
CviQI	GTAC	1 cut(s)	885
DdeI	CTNAG	3 cut(s)	280, 505, 587
DpnI	GATC	4 cut(s)	96, 801, 951, 1026
DpnII	GATC	4 cut(s)	94, 799, 949, 1024
DraI	TTTAAA	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	23, 635
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	854
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	992
EcoT38I	GRGCYC	2 cut(s)	23, 635
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	725, 838, 881, 905
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	4 cut(s)	721, 834, 877, 901
FauNDI	CATATG	1 cut(s)	841
Fnu4HI	GCNGC	6 cut(s)	258, 592, 851, 913, 916, 1033
FokI	GGATG	2 cut(s)	717, 721
FriOI	GRGCYC	2 cut(s)	23, 635
Fsp4HI	GCNGC	6 cut(s)	258, 592, 851, 913, 916, 1033
FspBI	CTAG	3 cut(s)	435, 543, 1128
GluI	GCNGC	6 cut(s)	258, 592, 851, 913, 916, 1033
GsaI	CCCAGC	1 cut(s)	412
GsuI	CTGGAG	2 cut(s)	142, 835
HaeIII	GGCC	2 cut(s)	433, 747
HgaI	GACGC	1 cut(s)	593
Hin1II	CATG	4 cut(s)	725, 838, 881, 905
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	3 cut(s)	295, 656, 689
HphI	GGTGA	3 cut(s)	157, 875, 948
Hpy166II	GTNNAC	1 cut(s)	1046
Hpy188I	TCNGA	5 cut(s)	88, 242, 300, 661, 694
Hpy188III	TCNNGA	6 cut(s)	473, 653, 676, 686, 1001, 1128
Hpy8I	GTNNAC	1 cut(s)	1046
HpyAV	CCTTC	3 cut(s)	319, 737, 929
HpyCH4III	ACNGT	4 cut(s)	31, 628, 643, 1077
HpyCH4V	TGCA	7 cut(s)	129, 257, 455, 752, 990, 1039, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 263, 515, 727
HpyF3I	CTNAG	3 cut(s)	280, 505, 587
Hsp92II	CATG	4 cut(s)	725, 838, 881, 905
Kzo9I	GATC	4 cut(s)	94, 799, 949, 1024
LmnI	GCTCC	3 cut(s)	419, 601, 847
Lsp1109I	GCAGC	6 cut(s)	269, 603, 837, 899, 902, 1044
LweI	GCATC	4 cut(s)	116, 739, 999, 1121
MaeI	CTAG	3 cut(s)	435, 543, 1128
MaeIII	GTNAC	3 cut(s)	10, 673, 954
MalI	GATC	4 cut(s)	96, 801, 951, 1026
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	4 cut(s)	94, 799, 949, 1024
MboII	GAAGA	5 cut(s)	66, 346, 361, 770, 804
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	3 cut(s)	23, 42, 635
MluCI	AATT	5 cut(s)	68, 448, 495, 870, 927
MmeI	TCCRAC	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	992
MseI	TTAA	3 cut(s)	446, 893, 930
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	4 cut(s)	72, 263, 515, 727
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	4 cut(s)	94, 799, 949, 1024
NlaIII	CATG	4 cut(s)	725, 838, 881, 905
NmuCI	GTSAC	3 cut(s)	10, 673, 954
NsiI	ATGCAT	1 cut(s)	992
NspI	RCATGY	2 cut(s)	725, 838
NspV	TTCGAA	1 cut(s)	922
PaeR7I	CTCGAG	1 cut(s)	854
PceI	AGGCCT	1 cut(s)	747
PciI	ACATGT	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	295, 656, 689
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	6 cut(s)	259, 593, 852, 914, 917, 1034
PscI	ACATGT	1 cut(s)	834
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	431, 488
PspXI	VCTCGAGB	1 cut(s)	854
PstNI	CAGNNNCTG	3 cut(s)	263, 515, 641
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	886
RsaNI	GTAC	1 cut(s)	885
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	446, 893, 930
SatI	GCNGC	6 cut(s)	258, 592, 851, 913, 916, 1033
Sau3AI	GATC	4 cut(s)	94, 799, 949, 1024
Sau96I	GGNCC	2 cut(s)	431, 488
ScaI	AGTACT	1 cut(s)	886
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	3 cut(s)	23, 42, 635
SfaNI	GCATC	4 cut(s)	116, 739, 999, 1121
Sfr274I	CTCGAG	1 cut(s)	854
SfuI	TTCGAA	1 cut(s)	922
SinI	GGWCC	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	854
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	5 cut(s)	68, 448, 495, 870, 927
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	3 cut(s)	306, 422, 486
SspMI	CTAG	3 cut(s)	435, 543, 1128
SstI	GAGCTC	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	4 cut(s)	31, 628, 643, 1077
TaqI	TCGA	4 cut(s)	124, 802, 855, 922
TasI	AATT	5 cut(s)	68, 448, 495, 870, 927
TatI	WGTACW	1 cut(s)	884
TfiI	GAWTC	3 cut(s)	295, 656, 689
Tru1I	TTAA	3 cut(s)	446, 893, 930
Tru9I	TTAA	3 cut(s)	446, 893, 930
TscAI	CASTG	3 cut(s)	36, 297, 1082
TseFI	GTSAC	3 cut(s)	10, 673, 954
TseI	GCWGC	6 cut(s)	257, 591, 850, 912, 915, 1032
Tsp45I	GTSAC	3 cut(s)	10, 673, 954
TspDTI	ATGAA	4 cut(s)	405, 918, 954, 1026
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	36, 297, 1082
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	448
XbaI	TCTAGA	1 cut(s)	1127
XceI	RCATGY	2 cut(s)	725, 838
XhoI	CTCGAG	1 cut(s)	854
XspI	CTAG	3 cut(s)	435, 543, 1128
ZrmI	AGTACT	1 cut(s)	886
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.