AT1G18030

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005794
Physical Location & Seq
Forward (+)
6204259 .. 6206988
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18030.2

Sequence Viewer

Length: 1056 bp
ATGTTGGAGAAGGAATCTGATTTGACTGCAATGGAGAAACCAAATAACAAGCACGCGGCTGATTCGTTTTCCAGCGAGGATTTGGTCTCACCGGTGAAGAAGGCAAAGAAGTCAGAGGAGGTTTCCGGCGGAGGAGAAGCTGTAGCCGCCGTTGGTAATAGAGAGGCGGAAGAAGATAAGCCTAGCTTTGTAAGTGAAGAAAAGAAGGAGTTTCTGGTCGAAGCTGATGTTGCTGAAGACAAAGGAGCTAGACATACTATGGAAGATGTTTGGGTGGTTTTGCCTGACGCTTCTTTGGATTTCCCAGGGACACTAAGGTGTGCGCATTTTGCAATTTATGATGGGCATGGAGGTCGTTTAGCTGCAGAGTTTGCTAAGAAGCATCTTCACCTTAACGTTCTTTCAGCTGGGTTACCACGTGAGTTGCTGGATGTCAAAGTTGCTAAAAAGGCCATTCTTGAAGGTTTCCGGAAAACTGATGAGTTGCTCCTGCAAAAAAGTGTTTCAGGAGGATGGCAAGATGGAGCCACAGCAGTCTGTGTCTGGATACTTGATCAAAAGGTTTTTGTTGCCAATATCGGTGATGCTAAGGCTGTTTTGGCACGATCCTCTACTACCAACGAATTGGGGAATCATACAGAAGCAGGTAATCCACTCAAAGCAATTGTTTTGACGAGAGAGCACAAAGCAATTTATCCACAGGAGCGCTCTCGCATTCAAAAGTCAGGTGGTGTTATAAGCTCAAATGGACGGTTACAAGGGCGTCTTGAGGTTTCTAGGGCTTTTGGTGATCGTCATTTTAAGAAGTTTGGTGTCAGTGCAACTCCAGACATTCATGCTTTTGAATTAACTGAGAGAGAAAACTTCATGATTCTTGGTTGCGATGGATTGTGGGAAGTGTTTGGACCAAGTGATGCTGTTGGATTTGTCCAGAAACTTTTGAAGGAGGGCTTGCATGTAAGCACGGTAAGTCGCCGTCTTGTGAAGGAAGCTGTGAAAGAACGTCGTTGCAAAGACAACTGCACAGCAATCGTGATAGTCTTCAAGCGGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

351

Amino Acids

38.49

Weight (kDa)

6.85

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 78 - 300 1.4e-48 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 737
Acc16I TGCGCA 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 635
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 468
AciI CCGC 5 cut(s) 56, 129, 147, 167, 1048
AclI AACGTT 1 cut(s) 396
AclWI GGATC 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 255
AcvI CACGTG 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 763
AfeI AGCGCT 1 cut(s) 707
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 461, 719, 845, 943, 1045
AjnI CCWGG 1 cut(s) 304
AleI CACNNNNGTG 1 cut(s) 316
AluBI AGCT 8 cut(s) 140, 186, 224, 248, 362, 407, 741, 992
AluI AGCT 8 cut(s) 140, 186, 224, 248, 362, 407, 741, 992
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 468
Aor51HI AGCGCT 1 cut(s) 707
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 1 cut(s) 362
AsiGI ACCGGT 1 cut(s) 91
AspLEI GCGC 2 cut(s) 325, 708
AspS9I GGNCC 1 cut(s) 905
AsuHPI GGTGA 5 cut(s) 81, 106, 380, 593, 800
AvaII GGWCC 1 cut(s) 905
BbrPI CACGTG 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 243, 1033
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 349
BccI CCATC 4 cut(s) 335, 507, 515, 878
BceAI ACGGC 2 cut(s) 134, 960
BcgI CGANNNNNNTGC 4 cut(s) 335, 369, 1012, 1046
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 540
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 3 cut(s) 183, 249, 777
BfmI CTRYAG 2 cut(s) 141, 363
BfoI RGCGCY 1 cut(s) 709
BfuAI ACCTGC 1 cut(s) 635
BfuI GTATCC 1 cut(s) 540
BisI GCNGC 3 cut(s) 57, 147, 363
BlsI GCNGC 3 cut(s) 58, 148, 364
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 1 cut(s) 905
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 391, 574, 904
BpiI GAAGAC 2 cut(s) 243, 1033
BpmI CTGGAG 1 cut(s) 810
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 304, 305
BsaWI WCCGGW 2 cut(s) 91, 468
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bse118I RCCGGY 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 468
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 304, 305
BseGI GGATG 2 cut(s) 436, 518
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 843
BseRI GAGGAG 2 cut(s) 131, 147
BseXI GCAGC 1 cut(s) 349
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 1006
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 452
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 684
BsiSI CCGG 3 cut(s) 92, 126, 469
BslFI GGGAC 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 684
Bsp13I TCCGGA 1 cut(s) 468
Bsp143I GATC 3 cut(s) 553, 605, 790
BspACI CCGC 5 cut(s) 56, 129, 147, 167, 1048
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 844
BspEI TCCGGA 1 cut(s) 468
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 867
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 1 cut(s) 600
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 304, 305
BssMI GATC 3 cut(s) 553, 605, 790
BssNI GRCGYC 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 753, 967
BstACI GRCGYC 1 cut(s) 763
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 54, 953
BstDEI CTNAG 4 cut(s) 314, 375, 588, 852
BstEII GGTNACC 1 cut(s) 411
BstF5I GGATG 2 cut(s) 436, 518
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 2 cut(s) 325, 708
BstKTI GATC 3 cut(s) 556, 608, 793
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 553, 605, 790
BstMWI GCNNNNNNNGC 6 cut(s) 146, 230, 329, 371, 449, 599
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 959
BstPI GGTNACC 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 141, 363
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 2 cut(s) 243, 1033
BstXI CCANNNNNNTGG 1 cut(s) 625
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 1 cut(s) 452
BtgZI GCGATG 1 cut(s) 897
BtsCI GGATG 2 cut(s) 436, 518
BtsIMutI CAGTG 1 cut(s) 823
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 54, 953
CciI TCATGA 1 cut(s) 867
CfoI GCGC 2 cut(s) 325, 708
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 905
CseI GACGC 2 cut(s) 296, 752
CspAI ACCGGT 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 4 cut(s) 347, 836, 868, 956
DdeI CTNAG 4 cut(s) 314, 375, 588, 852
DpnI GATC 3 cut(s) 555, 607, 792
DpnII GATC 3 cut(s) 553, 605, 790
EciI GGCGGA 2 cut(s) 144, 182
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 905
Eco47III AGCGCT 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 411
EcoO65I GGTNACC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 304
FaeI CATG 4 cut(s) 350, 839, 871, 959
FalI AAGNNNNNCTT 6 cut(s) 170, 202, 750, 782, 935, 967
FaqI GGGAC 1 cut(s) 322
FatI CATG 4 cut(s) 346, 835, 867, 955
FauI CCCGC 1 cut(s) 1041
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 3 cut(s) 57, 147, 363
FokI GGATG 2 cut(s) 443, 525
Fsp4HI GCNGC 3 cut(s) 57, 147, 363
FspAI RTGCGCAY 1 cut(s) 324
FspBI CTAG 3 cut(s) 183, 249, 777
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 2 cut(s) 324, 707
GluI GCNGC 3 cut(s) 57, 147, 363
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 1 cut(s) 452
HapII CCGG 3 cut(s) 92, 126, 469
HgaI GACGC 2 cut(s) 296, 752
HhaI GCGC 2 cut(s) 325, 708
Hin1I GRCGYC 1 cut(s) 763
Hin1II CATG 4 cut(s) 350, 839, 871, 959
Hin6I GCGC 2 cut(s) 323, 706
HinP1I GCGC 2 cut(s) 323, 706
HinfI GANTC 4 cut(s) 14, 62, 631, 871
HpaII CCGG 3 cut(s) 92, 126, 469
HphI GGTGA 5 cut(s) 81, 106, 380, 593, 800
Hpy188I TCNGA 2 cut(s) 19, 115
Hpy188III TCNNGA 9 cut(s) 458, 469, 507, 544, 767, 827, 868, 931, 1033
Hpy99I CGWCG 1 cut(s) 1008
HpyAV CCTTC 6 cut(s) 4, 94, 199, 455, 937, 979
HpyCH4III ACNGT 2 cut(s) 753, 967
HpyCH4IV ACGT 3 cut(s) 396, 418, 1003
HpyCH4V TGCA 8 cut(s) 29, 332, 365, 493, 821, 955, 1011, 1023
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 230, 329, 371, 449, 599
HpyF3I CTNAG 4 cut(s) 314, 375, 588, 852
HpySE526I ACGT 3 cut(s) 396, 418, 1003
Hsp92I GRCGYC 1 cut(s) 763
Hsp92II CATG 4 cut(s) 350, 839, 871, 959
HspAI GCGC 2 cut(s) 323, 706
Kpn2I TCCGGA 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 553, 605, 790
LmnI GCTCC 4 cut(s) 245, 492, 524, 703
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 3 cut(s) 391, 574, 904
MaeI CTAG 3 cut(s) 183, 249, 777
MaeII ACGT 3 cut(s) 396, 418, 1003
MaeIII GTNAC 2 cut(s) 411, 753
MalI GATC 3 cut(s) 555, 607, 792
MboI GATC 3 cut(s) 553, 605, 790
MboII GAAGA 8 cut(s) 109, 182, 185, 209, 248, 275, 377, 1033
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 5 cut(s) 333, 623, 663, 690, 845
MmeI TCCRAC 1 cut(s) 901
MroI TCCGGA 1 cut(s) 468
MseI TTAA 3 cut(s) 393, 801, 848
MslI CAYNNNNRTG 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 3 cut(s) 92, 126, 469
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 6 cut(s) 146, 230, 329, 371, 449, 599
NdeII GATC 3 cut(s) 553, 605, 790
NlaIII CATG 4 cut(s) 350, 839, 871, 959
NlaIV GGNNCC 1 cut(s) 526
NsbI TGCGCA 1 cut(s) 324
NspI RCATGY 1 cut(s) 959
OliI CACNNNNGTG 1 cut(s) 316
PagI TCATGA 1 cut(s) 867
PasI CCCWGGG 1 cut(s) 305
PctI GAATGC 1 cut(s) 714
PfeI GAWTC 4 cut(s) 14, 62, 631, 871
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 3 cut(s) 58, 148, 364
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 419
PsiI TTATAA 1 cut(s) 737
Psp1406I AACGTT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 304
PspCI CACGTG 1 cut(s) 419
PspEI GGTNACC 1 cut(s) 411
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 905
PstI CTGCAG 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 316
SaqAI TTAA 3 cut(s) 393, 801, 848
SatI GCNGC 3 cut(s) 57, 147, 363
Sau3AI GATC 3 cut(s) 553, 605, 790
Sau96I GGNCC 1 cut(s) 905
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 3 cut(s) 391, 574, 904
SfcI CTRYAG 2 cut(s) 141, 363
SgrAI CRCCGGYG 1 cut(s) 91
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 5 cut(s) 333, 623, 663, 690, 845
SsiI CCGC 5 cut(s) 56, 129, 147, 167, 1048
SspMI CTAG 3 cut(s) 183, 249, 777
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 753, 967
TaiI ACGT 3 cut(s) 399, 421, 1006
TaqI TCGA 1 cut(s) 219
TasI AATT 5 cut(s) 333, 623, 663, 690, 845
TauI GCSGC 2 cut(s) 59, 149
TfiI GAWTC 4 cut(s) 14, 62, 631, 871
Tru1I TTAA 3 cut(s) 393, 801, 848
Tru9I TTAA 3 cut(s) 393, 801, 848
TscAI CASTG 1 cut(s) 823
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 824, 856
TspRI CASTG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 905
XceI RCATGY 1 cut(s) 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 3 cut(s) 183, 249, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.