Rh7BG021700

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005794
Physical Location & Seq
Reverse (-)
1554080 .. 1558634
4555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG021700.1

Sequence Viewer

Length: 711 bp
ATGATGGGCATGGAGGTCGATTGGCTGCAGAGTATGCTCAGAAGCATTTGCATTCGAATGTGCTTGCGGCTGGATTACCACTTGAATGTGAAAGCAGCTAAGAAAGCCATTCTTGATGGTTTTCGGAAAACTGATGAGGCTATTCTTCAAGAAAGTGCTGCAGGGGGATGGCAAGACGGTGCTACAGCTGTATGTGTTTGGATATTAGGAAAAACAGTATTTGTTGCTAATATTGGGGATGCAAAAGCTGTGGTAGCAAGATCATCTCCTGTTGATGGATTGCAAAATGGTTCTGATGAAGCACGTCTTTTGAAGGCCATTGTTTTAACAAGAGAACACAAAGCCATCTATGCACAGGAGCGTGCTCGTATTCAGAAGGCTGGTGGTAGTGTGAGTTCAAATGGACGACTGCAGGGTCGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGTTTGGTGTTGTTGCTACCCCAGATATTCATTCATTTGACCTTACAGAAAGAGAGCACTTCATAATTCTTGGTTGCGACGGCCTCTGGGGGGTAATTGGACCAAGTGATGCTGTTGATTTTGTTCAGAAACAGTTGAAGGAGGGACTACCTGTTACAGCTATTAGCCGCTCTTTAGTAAGAGAAGCTGTGCGTGAGCGGCGCTGTAAAGATAACTGCACGGCAATCATAATCCTATTCAGGCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

236

Amino Acids

26.09

Weight (kDa)

9.32

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 32 - 224 5e-46 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
AccBSI CCGCTC 2 cut(s) 630, 658
AciI CCGC 3 cut(s) 67, 628, 658
AfiI CCNNNNNNNGG 2 cut(s) 275, 550
AgsI TTSAA 7 cut(s) 85, 149, 313, 399, 425, 457, 598
AjiI CACGTC 1 cut(s) 305
AluBI AGCT 5 cut(s) 98, 188, 248, 620, 647
AluI AGCT 5 cut(s) 98, 188, 248, 620, 647
Alw21I GWGCWC 2 cut(s) 367, 519
AoxI GGCC 3 cut(s) 315, 435, 541
ApeKI GCWGC 3 cut(s) 25, 95, 158
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 2 cut(s) 435, 560
AsuII TTCGAA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 560
Bbv12I GWGCWC 2 cut(s) 367, 519
BbvI GCAGC 3 cut(s) 12, 107, 145
BccI CCATC 4 cut(s) 110, 162, 269, 353
BceAI ACGGC 2 cut(s) 556, 696
BcgI CGANNNNNNTGC 1 cut(s) 32
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 4 cut(s) 26, 159, 183, 410
BfoI RGCGCY 1 cut(s) 664
BisI GCNGC 6 cut(s) 26, 68, 96, 159, 628, 659
BlsI GCNGC 6 cut(s) 27, 69, 97, 160, 629, 660
Bme18I GGWCC 1 cut(s) 560
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 435, 560
BmsI GCATC 2 cut(s) 229, 559
Bpu14I TTCGAA 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 550
Bse1I ACTGG 1 cut(s) 451
BseGI GGATG 2 cut(s) 173, 244
BseLI CCNNNNNNNGG 2 cut(s) 275, 550
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 3 cut(s) 12, 107, 145
BsgI GTGCAG 1 cut(s) 661
BshFI GGCC 3 cut(s) 317, 437, 543
BsiHKAI GWGCWC 2 cut(s) 367, 519
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 2 cut(s) 275, 550
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 3 cut(s) 317, 437, 543
Bsp119I TTCGAA 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 367, 519
Bsp143I GATC 2 cut(s) 260, 445
BspACI CCGC 3 cut(s) 67, 628, 658
BspANI GGCC 3 cut(s) 317, 437, 543
BspCNI CTCAG 1 cut(s) 51
BspMAI CTGCAG 3 cut(s) 30, 163, 414
BspT104I TTCGAA 1 cut(s) 55
BsrBI CCGCTC 2 cut(s) 630, 658
BsrI ACTGG 1 cut(s) 451
BssMI GATC 2 cut(s) 260, 445
Bst4CI ACNGT 3 cut(s) 179, 217, 594
BstAPI GCANNNNNTGC 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 65, 363
BstDEI CTNAG 2 cut(s) 38, 99
BstF5I GGATG 2 cut(s) 173, 244
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 2 cut(s) 263, 448
BstMBI GATC 2 cut(s) 260, 445
BstMWI GCNNNNNNNGC 5 cut(s) 34, 104, 254, 350, 658
BstSFI CTRYAG 4 cut(s) 26, 159, 183, 410
BstV1I GCAGC 3 cut(s) 12, 107, 145
BsuRI GGCC 3 cut(s) 317, 437, 543
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 173, 244
Cac8I GCNNGC 2 cut(s) 65, 363
CfoI GCGC 1 cut(s) 663
Cfr13I GGNCC 2 cut(s) 435, 560
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 1 cut(s) 10
DdeI CTNAG 2 cut(s) 38, 99
DpnI GATC 2 cut(s) 262, 447
DpnII GATC 2 cut(s) 260, 445
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 435
FaeI CATG 1 cut(s) 13
FaiI YATR 6 cut(s) 11, 35, 193, 351, 524, 689
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 291, 323
FaqI GGGAC 1 cut(s) 618
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 26, 68, 96, 159, 628, 659
FokI GGATG 2 cut(s) 180, 251
Fsp4HI GCNGC 6 cut(s) 26, 68, 96, 159, 628, 659
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 662
GluI GCNGC 6 cut(s) 26, 68, 96, 159, 628, 659
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 3 cut(s) 317, 437, 543
HhaI GCGC 1 cut(s) 663
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
Hpy188I TCNGA 5 cut(s) 41, 126, 295, 375, 588
Hpy188III TCNNGA 2 cut(s) 113, 149
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 3 cut(s) 307, 370, 592
HpyCH4III ACNGT 3 cut(s) 179, 217, 594
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 8 cut(s) 28, 51, 161, 242, 283, 353, 412, 678
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 104, 254, 350, 658
HpyF3I CTNAG 2 cut(s) 38, 99
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 661
Kzo9I GATC 2 cut(s) 260, 445
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 3 cut(s) 12, 107, 145
LweI GCATC 2 cut(s) 229, 559
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 262, 447
MbiI CCGCTC 2 cut(s) 630, 658
MboI GATC 2 cut(s) 260, 445
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 367, 519
MluCI AATT 2 cut(s) 525, 555
MnlI CCTC 4 cut(s) 7, 130, 554, 595
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 2 cut(s) 56, 84
MspA1I CMGCKG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 5 cut(s) 34, 104, 254, 350, 658
NdeII GATC 2 cut(s) 260, 445
NlaIII CATG 1 cut(s) 13
NspV TTCGAA 1 cut(s) 55
PctI GAATGC 1 cut(s) 51
PkrI GCNGC 6 cut(s) 27, 69, 97, 160, 629, 660
PspPI GGNCC 2 cut(s) 435, 560
PsrI GAACNNNNNNTAC 2 cut(s) 379, 411
PstI CTGCAG 3 cut(s) 30, 163, 414
PvuII CAGCTG 1 cut(s) 188
RseI CAYNNNNRTG 2 cut(s) 56, 84
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 6 cut(s) 26, 68, 96, 159, 628, 659
Sau3AI GATC 2 cut(s) 260, 445
Sau96I GGNCC 2 cut(s) 435, 560
SduI GDGCHC 2 cut(s) 367, 519
SetI ASST 9 cut(s) 18, 100, 190, 250, 307, 504, 613, 622, 649
SfaNI GCATC 2 cut(s) 229, 559
SfcI CTRYAG 4 cut(s) 26, 159, 183, 410
SfuI TTCGAA 1 cut(s) 55
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 56, 84
Sse9I AATT 2 cut(s) 525, 555
SsiI CCGC 3 cut(s) 67, 628, 658
SspI AATATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 179, 217, 594
TaiI ACGT 1 cut(s) 307
TaqI TCGA 2 cut(s) 18, 55
TasI AATT 2 cut(s) 525, 555
TauI GCSGC 3 cut(s) 70, 630, 661
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseI GCWGC 3 cut(s) 25, 95, 158
TspDTI ATGAA 4 cut(s) 312, 479, 483, 511
VpaK11BI GGWCC 1 cut(s) 560
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.