Rh7AG021700

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005794
Physical Location & Seq
Reverse (-)
1432629 .. 1434730
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG021700.1

Sequence Viewer

Length: 714 bp
ATGGTACGAATTTACCTTGCAACTTTGCAAGATATGTTTTTTTTTTTTTATCGTATAGTACTTCATCCATCTTTGGATTGCTTCTTAGTAGGTGATATGTATTTGAATTTCCCTAATTTAGGTTTTCGGAAAACTGATGAGGCTATTCTTCAAGAAAGTGCTGCAGGGGGATGGCTAGACGGTGCTACAGCTGTATGTGTTTGGATATTAGGAAAAACAGTATTTGTTGCTAATATTGGGGATGCAAAAGCTGTGGTAGCAAGATCATCTCCTGTTGATGGATTGCAAAATGGTTCTGATGAAGCACGTCTTTTGAAGGCCATTGTTTTAACAAGAGAACACAAAGCCATCTATGCACAGGAGCGTGCTCGTATTCAGAAGGCTGGTGGTAGTGTGAGTTCAAATGGACGACTGCAGGGTCGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGTTTGGTGTTGTTGCTACCCCAGATATTCATTCATTTGACCTTACAGAAAGAGAGCACTTCATAATTCTTGGTTGCGACGGCCTCTGGGGGGTAATTGGACCAAGTGATGCTGTTGATTTTGTTCAGAAACAGTTGAAGGAGGGACTACCTGTTACGGCTATTAGCCGCTCTCTAGTAAGAGAAGCTGTGCGTGAGCGGCGCTGTAAAGATAACTGCACGGCAATCATAATCCTATTCAGGCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

237

Amino Acids

26.35

Weight (kDa)

9.01

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 41 - 225 6.1e-44 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 417
AccBSI CCGCTC 2 cut(s) 633, 661
AciI CCGC 2 cut(s) 631, 661
AcsI RAATTY 2 cut(s) 9, 106
AfaI GTAC 2 cut(s) 6, 60
AfiI CCNNNNNNNGG 3 cut(s) 119, 278, 553
AgsI TTSAA 7 cut(s) 106, 152, 316, 402, 428, 460, 601
AjiI CACGTC 1 cut(s) 308
AluBI AGCT 3 cut(s) 191, 251, 650
AluI AGCT 3 cut(s) 191, 251, 650
Alw21I GWGCWC 2 cut(s) 370, 522
AoxI GGCC 3 cut(s) 318, 438, 544
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 9, 106
AspLEI GCGC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 438, 563
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 563
Bbv12I GWGCWC 2 cut(s) 370, 522
BbvI GCAGC 1 cut(s) 148
BccI CCATC 4 cut(s) 76, 165, 272, 356
BceAI ACGGC 3 cut(s) 559, 636, 699
BfaI CTAG 3 cut(s) 176, 435, 638
BfmI CTRYAG 3 cut(s) 162, 186, 413
BfoI RGCGCY 1 cut(s) 667
BisI GCNGC 3 cut(s) 162, 631, 662
BlsI GCNGC 3 cut(s) 163, 632, 663
BmcAI AGTACT 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 563
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 438, 563
BmsI GCATC 2 cut(s) 232, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 278, 553
Bse1I ACTGG 1 cut(s) 454
BseGI GGATG 3 cut(s) 64, 176, 247
BseLI CCNNNNNNNGG 3 cut(s) 119, 278, 553
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 664
BshFI GGCC 3 cut(s) 320, 440, 546
BsiHKAI GWGCWC 2 cut(s) 370, 522
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 3 cut(s) 119, 278, 553
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 3 cut(s) 320, 440, 546
Bsp1286I GDGCHC 2 cut(s) 370, 522
Bsp143I GATC 2 cut(s) 263, 448
BspACI CCGC 2 cut(s) 631, 661
BspANI GGCC 3 cut(s) 320, 440, 546
BspMAI CTGCAG 2 cut(s) 166, 417
BsrBI CCGCTC 2 cut(s) 633, 661
BsrI ACTGG 1 cut(s) 454
BssMI GATC 2 cut(s) 263, 448
Bst4CI ACNGT 3 cut(s) 182, 220, 597
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 64, 176, 247
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 2 cut(s) 266, 451
BstMBI GATC 2 cut(s) 263, 448
BstMWI GCNNNNNNNGC 3 cut(s) 257, 353, 661
BstSFI CTRYAG 3 cut(s) 162, 186, 413
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 3 cut(s) 320, 440, 546
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 3 cut(s) 64, 176, 247
Cac8I GCNNGC 1 cut(s) 366
CfoI GCGC 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 438, 563
Csp6I GTAC 2 cut(s) 5, 59
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviQI GTAC 2 cut(s) 5, 59
DdeI CTNAG 1 cut(s) 85
DpnI GATC 2 cut(s) 265, 450
DpnII GATC 2 cut(s) 263, 448
DrdI GACNNNNNNGTC 1 cut(s) 417
DseDI GACNNNNNNGTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 563
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 438
FaiI YATR 7 cut(s) 35, 56, 98, 196, 354, 527, 692
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 621
Fnu4HI GCNGC 3 cut(s) 162, 631, 662
FokI GGATG 3 cut(s) 51, 183, 254
Fsp4HI GCNGC 3 cut(s) 162, 631, 662
FspBI CTAG 3 cut(s) 176, 435, 638
GlaI GCGC 1 cut(s) 665
GluI GCNGC 3 cut(s) 162, 631, 662
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 3 cut(s) 320, 440, 546
HhaI GCGC 1 cut(s) 666
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 129, 298, 378, 591
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 3 cut(s) 310, 373, 595
HpyCH4III ACNGT 3 cut(s) 182, 220, 597
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 8 cut(s) 20, 28, 164, 245, 286, 356, 415, 681
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 353, 661
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 307
HspAI GCGC 1 cut(s) 664
Kzo9I GATC 2 cut(s) 263, 448
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 232, 562
MaeI CTAG 3 cut(s) 176, 435, 638
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 616
MalI GATC 2 cut(s) 265, 450
MbiI CCGCTC 2 cut(s) 633, 661
MboI GATC 2 cut(s) 263, 448
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 2 cut(s) 370, 522
MluCI AATT 5 cut(s) 9, 106, 115, 528, 558
MnlI CCTC 3 cut(s) 133, 557, 598
MseI TTAA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 257, 353, 661
NdeII GATC 2 cut(s) 263, 448
PkrI GCNGC 3 cut(s) 163, 632, 663
PspPI GGNCC 2 cut(s) 438, 563
PsrI GAACNNNNNNTAC 2 cut(s) 382, 414
PstI CTGCAG 2 cut(s) 166, 417
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 6, 60
RsaNI GTAC 2 cut(s) 5, 59
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 3 cut(s) 162, 631, 662
Sau3AI GATC 2 cut(s) 263, 448
Sau96I GGNCC 2 cut(s) 438, 563
ScaI AGTACT 1 cut(s) 60
SduI GDGCHC 2 cut(s) 370, 522
SetI ASST 9 cut(s) 18, 94, 124, 193, 253, 310, 507, 616, 652
SfaNI GCATC 2 cut(s) 232, 562
SfcI CTRYAG 3 cut(s) 162, 186, 413
SinI GGWCC 1 cut(s) 563
Sse9I AATT 5 cut(s) 9, 106, 115, 528, 558
SsiI CCGC 2 cut(s) 631, 661
SspI AATATT 1 cut(s) 235
SspMI CTAG 3 cut(s) 176, 435, 638
TaaI ACNGT 3 cut(s) 182, 220, 597
TaiI ACGT 1 cut(s) 310
TasI AATT 5 cut(s) 9, 106, 115, 528, 558
TatI WGTACW 1 cut(s) 58
TauI GCSGC 2 cut(s) 633, 664
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 53, 315, 482, 486, 514
VpaK11BI GGWCC 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 2 cut(s) 9, 106
XspI CTAG 3 cut(s) 176, 435, 638
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.