Rh7DG022300

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005794
Physical Location & Seq
Reverse (-)
1759640 .. 1762928
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG022300.1

Sequence Viewer

Length: 807 bp
ATGAGTGAAGCTATCCAAAAATCGAAGCCAAAGCGCGAGAGCGATTCCGGGGATTCAAGCTCAGTTGCAAAGAAGCTGAAAATCGATCAAGGCCAAAACCCAGAAGTTGATTCGAGTGGGAGTGAGGCAAATTCAGATGCGAGGGAAATGGGTTTTGAAATCGAAGCTGAGGTAGCAGAGGATAAGGGGTTAAGGCACGCCATGGAGGACGCGTGGGTTCTGCTCTTGGATGCGAGCTTGGGTTTTCAGGGAAACTTGAGGTGCGCACATTTTGCGATTTATGATGGGCATGGAGGTCGATTGGCTGCAGAGTATGCTCAGAAGCATTTGCATTCGAATGTGCTTTCGGCTGGATTACCACGTGAGTTGTTGAATGTGAAAGCAGCTAAGAAAGCCATTCTTGATGGTTTTCGGAAAACTGATGAGGCTATTCTTCAAGAAAGTGCTGCAGGGGGATGGCAAGACGGTGCTACAGCTGTATGTGTTTGGATATTAGGAAAAACAGTATTTGTTGCTAATATTGGGGATACAAAAGCTGTGGTAGCAAGATCATCTCCTGTTGATGGATTGCAAAATGGTTCTGATGAAGCACGTCTTTTGAAGGCCATTGTTTTAACAAGAGAACACAAAGCCATCTATGCACAGGAGCGTGCTCGTATTCAGAAGGCTGGTGGTAGTGTGAGTTCAAATGGACGACTGCAGGGTCGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGGTGTTAATTTCTTTTCTTCTTTTTTTTTTCAGACGCTTGTCCCTGTACTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

268

Amino Acids

29.17

Weight (kDa)

8.97

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 60 - 250 5.2e-35 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 702
Acc16I TGCGCA 1 cut(s) 265
AccII CGCG 2 cut(s) 36, 212
AcsI RAATTY 1 cut(s) 130
AcvI CACGTG 1 cut(s) 362
AfaI GTAC 1 cut(s) 797
AfiI CCNNNNNNNGG 1 cut(s) 563
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 8 cut(s) 57, 158, 373, 437, 601, 687, 713, 745
AjiI CACGTC 1 cut(s) 593
AluBI AGCT 8 cut(s) 11, 60, 76, 167, 237, 386, 476, 536
AluI AGCT 8 cut(s) 11, 60, 76, 167, 237, 386, 476, 536
Alw21I GWGCWC 1 cut(s) 655
AoxI GGCC 3 cut(s) 91, 603, 723
ApeKI GCWGC 3 cut(s) 305, 383, 446
ApoI RAATTY 1 cut(s) 130
AspLEI GCGC 2 cut(s) 36, 266
AspS9I GGNCC 1 cut(s) 723
AsuC2I CCSGG 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 335
BbrPI CACGTG 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 655
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 292, 395, 433
BccI CCATC 5 cut(s) 278, 398, 450, 557, 641
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciVI GTATCC 1 cut(s) 520
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 4 cut(s) 306, 447, 471, 698
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 3 cut(s) 306, 384, 447
BlsI GCNGC 3 cut(s) 307, 385, 448
Bme1390I CCNGG 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 2 cut(s) 127, 220
BoxI GACNNNNGTC 1 cut(s) 787
Bpu10I CCTNAGC 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 48, 201
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse1I ACTGG 1 cut(s) 739
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 48, 201
BseGI GGATG 2 cut(s) 235, 461
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 3 cut(s) 75, 159, 332
BseNI ACTGG 1 cut(s) 739
BseXI GCAGC 3 cut(s) 292, 395, 433
Bsh1236I CGCG 2 cut(s) 36, 212
BshFI GGCC 3 cut(s) 93, 605, 725
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 563
BsmFI GGGAC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 3 cut(s) 93, 605, 725
Bsp119I TTCGAA 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 3 cut(s) 85, 548, 733
Bsp19I CCATGG 1 cut(s) 201
BspANI GGCC 3 cut(s) 93, 605, 725
BspCNI CTCAG 3 cut(s) 74, 160, 331
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 2 cut(s) 36, 212
BspMAI CTGCAG 3 cut(s) 310, 451, 702
BspT104I TTCGAA 1 cut(s) 335
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 2 cut(s) 48, 201
BssMI GATC 3 cut(s) 85, 548, 733
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 467, 505
BstAPI GCANNNNNTGC 2 cut(s) 272, 314
BstBAI YACGTR 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 198, 235, 651
BstDEI CTNAG 4 cut(s) 61, 168, 318, 387
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 235, 461
BstFNI CGCG 2 cut(s) 36, 212
BstHHI GCGC 2 cut(s) 36, 266
BstKTI GATC 3 cut(s) 88, 551, 736
BstMBI GATC 3 cut(s) 85, 548, 733
BstMWI GCNNNNNNNGC 6 cut(s) 173, 272, 314, 392, 542, 638
BstPAI GACNNNNGTC 1 cut(s) 787
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 4 cut(s) 306, 447, 471, 698
BstUI CGCG 2 cut(s) 36, 212
BstV1I GCAGC 3 cut(s) 292, 395, 433
Bsu15I ATCGAT 1 cut(s) 84
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 3 cut(s) 93, 605, 725
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 593
BtsCI GGATG 2 cut(s) 235, 461
Cac8I GCNNGC 3 cut(s) 198, 235, 651
CfoI GCGC 2 cut(s) 36, 266
Cfr13I GGNCC 1 cut(s) 723
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 2 cut(s) 218, 792
Csp6I GTAC 1 cut(s) 796
CspCI CAANNNNNGTGG 4 cut(s) 348, 383, 519, 554
CviAII CATG 2 cut(s) 202, 290
CviQI GTAC 1 cut(s) 796
DdeI CTNAG 4 cut(s) 61, 168, 318, 387
DpnI GATC 3 cut(s) 87, 550, 735
DpnII GATC 3 cut(s) 85, 548, 733
DrdI GACNNNNNNGTC 1 cut(s) 702
DseDI GACNNNNNNGTC 1 cut(s) 702
Eco130I CCWWGG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 723
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 205, 293
FaiI YATR 6 cut(s) 203, 282, 291, 315, 481, 639
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 579, 611
FaqI GGGAC 1 cut(s) 775
FatI CATG 2 cut(s) 201, 289
Fnu4HI GCNGC 3 cut(s) 306, 384, 447
FokI GGATG 2 cut(s) 242, 468
Fsp4HI GCNGC 3 cut(s) 306, 384, 447
FspAI RTGCGCAY 1 cut(s) 265
FspBI CTAG 1 cut(s) 720
FspI TGCGCA 1 cut(s) 265
GlaI GCGC 2 cut(s) 35, 265
GluI GCNGC 3 cut(s) 306, 384, 447
HaeIII GGCC 3 cut(s) 93, 605, 725
HapII CCGG 1 cut(s) 48
HgaI GACGC 2 cut(s) 218, 792
HhaI GCGC 2 cut(s) 36, 266
Hin1II CATG 2 cut(s) 205, 293
Hin6I GCGC 2 cut(s) 34, 264
HinP1I GCGC 2 cut(s) 34, 264
HinfI GANTC 3 cut(s) 44, 53, 110
HpaII CCGG 1 cut(s) 48
Hpy188I TCNGA 6 cut(s) 136, 321, 414, 583, 663, 782
Hpy188III TCNNGA 2 cut(s) 401, 437
HpyAV CCTTC 2 cut(s) 595, 658
HpyCH4III ACNGT 2 cut(s) 467, 505
HpyCH4IV ACGT 2 cut(s) 361, 592
HpyCH4V TGCA 7 cut(s) 68, 308, 331, 449, 571, 641, 700
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 272, 314, 392, 542, 638
HpyF3I CTNAG 4 cut(s) 61, 168, 318, 387
HpySE526I ACGT 2 cut(s) 361, 592
Hsp92II CATG 2 cut(s) 205, 293
HspAI GCGC 2 cut(s) 34, 264
Kzo9I GATC 3 cut(s) 85, 548, 733
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 3 cut(s) 292, 395, 433
LweI GCATC 2 cut(s) 127, 220
MaeI CTAG 1 cut(s) 720
MaeII ACGT 2 cut(s) 361, 592
MalI GATC 3 cut(s) 87, 550, 735
MboI GATC 3 cut(s) 85, 548, 733
MboII GAAGA 2 cut(s) 425, 758
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 2 cut(s) 130, 756
MluI ACGCGT 1 cut(s) 210
MnlI CCTC 8 cut(s) 118, 135, 163, 172, 199, 252, 287, 418
MseI TTAA 4 cut(s) 191, 614, 755, 800
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 331
MvnI CGCG 2 cut(s) 36, 212
MwoI GCNNNNNNNGC 6 cut(s) 173, 272, 314, 392, 542, 638
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 201
NdeII GATC 3 cut(s) 85, 548, 733
NlaIII CATG 2 cut(s) 205, 293
NsbI TGCGCA 1 cut(s) 265
NspV TTCGAA 1 cut(s) 335
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 44, 53, 110
PkrI GCNGC 3 cut(s) 307, 385, 448
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 362
PshAI GACNNNNGTC 1 cut(s) 787
PspCI CACGTG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 723
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstI CTGCAG 3 cut(s) 310, 451, 702
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 4 cut(s) 191, 614, 755, 800
SatI GCNGC 3 cut(s) 306, 384, 447
Sau3AI GATC 3 cut(s) 85, 548, 733
Sau96I GGNCC 1 cut(s) 723
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 2 cut(s) 127, 220
SfcI CTRYAG 4 cut(s) 306, 447, 471, 698
SfuI TTCGAA 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 130, 756
SspI AATATT 1 cut(s) 520
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 467, 505
TaiI ACGT 2 cut(s) 364, 595
TaqI TCGA 6 cut(s) 23, 84, 113, 162, 298, 335
TasI AATT 2 cut(s) 130, 756
TatI WGTACW 1 cut(s) 795
TfiI GAWTC 3 cut(s) 44, 53, 110
Tru1I TTAA 4 cut(s) 191, 614, 755, 800
Tru9I TTAA 4 cut(s) 191, 614, 755, 800
TseI GCWGC 3 cut(s) 305, 383, 446
TspDTI ATGAA 1 cut(s) 600
XapI RAATTY 1 cut(s) 130
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.