Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005794

Physical Location & Seq

Genomic Coordinates Reverse (-)

1434745 .. 1435540

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGTGAAGCTATCCAAAAATCGAAGCCAAAGCGCGAGAGCGATTCCGGGGATTCAAGCTCAGTTGCAAAGAAGCTGAAAATCGATCAAAGCCAAAACCCAGAAGTTGATTCGAGTGGGAGTGAGGCAAATTCAGATGCGAGGGAAATGGGTTTTGAAATCGAAGCTGAGGTAGCAGAGGATAAGGGGTTAAGGCACGCCATGGAGGACGCGTGGGTTCTGCTCTTGGATGCGAGCTTGGGTTTTCAGGGAAACTTGAGGTGTGCACATTTTGCGATTTATGATGGGCATGGAGGTCGATTGGCTGCAGAGTATGCTCAGAAGCATTTGCATTCGAATGTGCTTTCGGCTGGATTACCACTTGAATGTGAAAGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

126

Amino Acids

13.59

Weight (kDa)

4.92

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18030 AT1G18030
fragaria_vesca	FvH4_5g16840 FvH4_5g16840 FvH4_5g16840 FvH4_5g16840 FvH4_5g16840
malus_domestica	MD06G1222300.v1.1
prunus_persica	Prupe.5G226800_v2.0.a1 Prupe.5G226800_v2.0.a1 Prupe.5G226800_v2.0.a1 Prupe.5G226800_v2.0.a1
pyrus_communis	pycom06g19780
rosa_chinensis	RchiOBHm_Chr7g0179231
rosa_laevigata	RLG00000005371
rosa_multiflora	Rmu_co8321161.1_g000001 Rmu_sc0009798.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274200
rosa_rugosa	Rorug04G0053600 Rorug06G0422500 Rorug06G0422600
rosa_samantha	Rh7AG021700 Rh7AG021800 Rh7BG021700 Rh7CG022900 Rh7CG023000 Rh7DG022300
rosa_wichuraiana	Rw7G001790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	36, 212
AcsI	RAATTY	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	57, 158, 365
AluBI	AGCT	6 cut(s)	11, 60, 76, 167, 237, 378
AluI	AGCT	6 cut(s)	11, 60, 76, 167, 237, 378
Alw21I	GWGCWC	1 cut(s)	268
Alw44I	GTGCAC	1 cut(s)	264
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	305, 375
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BcnI	CCSGG	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	2 cut(s)	306, 376
BlsI	GCNGC	2 cut(s)	307, 377
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	127, 220
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	48, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	48, 201
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	3 cut(s)	75, 159, 332
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	36, 212
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	74, 160, 331
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	2 cut(s)	36, 212
BspMAI	CTGCAG	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	48, 201
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	201
BstAPI	GCANNNNNTGC	2 cut(s)	272, 314
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	198, 235
BstDEI	CTNAG	3 cut(s)	61, 168, 318
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	2 cut(s)	36, 212
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 272, 314
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	2 cut(s)	36, 212
BstV1I	GCAGC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	198, 235
CfoI	GCGC	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	218
CviAII	CATG	2 cut(s)	202, 290
DdeI	CTNAG	3 cut(s)	61, 168, 318
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	205, 293
FaiI	YATR	4 cut(s)	203, 282, 291, 315
FatI	CATG	2 cut(s)	201, 289
Fnu4HI	GCNGC	2 cut(s)	306, 376
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	306, 376
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	306, 376
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	205, 293
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	44, 53, 110
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	136, 321
Hpy8I	GTNNAC	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	68, 266, 308, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 272, 314
HpyF3I	CTNAG	3 cut(s)	61, 168, 318
Hsp92II	CATG	2 cut(s)	205, 293
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	61, 114, 233, 336
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	127, 220
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	130
MluI	ACGCGT	1 cut(s)	210
MnlI	CCTC	7 cut(s)	118, 135, 163, 172, 199, 252, 287
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	2 cut(s)	336, 364
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	331
MvnI	CGCG	2 cut(s)	36, 212
MwoI	GCNNNNNNNGC	3 cut(s)	173, 272, 314
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	205, 293
NspV	TTCGAA	1 cut(s)	335
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	44, 53, 110
PkrI	GCNGC	2 cut(s)	307, 377
PstI	CTGCAG	1 cut(s)	310
RseI	CAYNNNNRTG	2 cut(s)	336, 364
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	306, 376
Sau3AI	GATC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	9 cut(s)	13, 62, 78, 169, 174, 239, 263, 298, 380
SfaNI	GCATC	2 cut(s)	127, 220
SfcI	CTRYAG	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	335
SmiMI	CAYNNNNRTG	2 cut(s)	336, 364
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	6 cut(s)	23, 84, 113, 162, 298, 335
TasI	AATT	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	44, 53, 110
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseI	GCWGC	2 cut(s)	305, 375
VneI	GTGCAC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.