Rh7CG022900

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005794
Physical Location & Seq
Reverse (-)
1628048 .. 1630031
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG022900.1

Sequence Viewer

Length: 525 bp
ATGAGGCTATTCTTCAAGAAAGTGCTGCAGGTATTTGTTGCTAATATTGGGGATGCAAAAGCTGTGGTAGCAAGATCATCTCCTGTTGATGGATTGCAAAATGGTTCTGATGAAGCACGTCTTTTGAAGGCCATTGTTTTAACAAGAGAACACAAAGCCATATATGCACAGGAGCGTGCTCGTATTCAGAAGGCTGGTGGTAGTGTGAGTTCAAATGGACGATTGCAGGGTCGCCTTGAAGTTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGTTTGGTGTTGTTGCTACCCCAGATATTCATTCATTTGACCTTACAGAAAGAGAGCACTTCATAATTCTTGGTTGCGACGGCCTCTGGGGGGTAATTGGACCAAGTGATGCTGTTGATTTTGTTCAGAAACAGTTGAAGGAGGGGCTACCTGTTACGGCTATTAGCCGCTCTCTAGTAAGAGAAGCTGTGCGTGAGCGGCGCTGTAAAGATAACTGCACGGCAATCATAATCCTATTCAGGCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

174

Amino Acids

19.34

Weight (kDa)

9.95

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 10 - 162 5.6e-38 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccBSI CCGCTC 2 cut(s) 444, 472
AciI CCGC 2 cut(s) 442, 472
AfiI CCNNNNNNNGG 2 cut(s) 89, 364
AgsI TTSAA 6 cut(s) 16, 127, 213, 239, 271, 412
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 2 cut(s) 62, 461
AluI AGCT 2 cut(s) 62, 461
Alw21I GWGCWC 2 cut(s) 181, 333
AoxI GGCC 3 cut(s) 129, 249, 355
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 249, 374
AvaII GGWCC 1 cut(s) 374
Bbv12I GWGCWC 2 cut(s) 181, 333
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 83
BceAI ACGGC 3 cut(s) 370, 447, 510
BfaI CTAG 2 cut(s) 246, 449
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 478
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 3 cut(s) 26, 442, 473
BlsI GCNGC 3 cut(s) 27, 443, 474
Bme18I GGWCC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 249, 374
BmsI GCATC 2 cut(s) 43, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 364
Bse1I ACTGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 89, 364
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 475
BshFI GGCC 3 cut(s) 131, 251, 357
BsiHKAI GWGCWC 2 cut(s) 181, 333
BslI CCNNNNNNNGG 2 cut(s) 89, 364
BsnI GGCC 3 cut(s) 131, 251, 357
Bsp1286I GDGCHC 2 cut(s) 181, 333
Bsp143I GATC 2 cut(s) 74, 259
BspACI CCGC 2 cut(s) 442, 472
BspANI GGCC 3 cut(s) 131, 251, 357
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 19
BsrBI CCGCTC 2 cut(s) 444, 472
BsrI ACTGG 1 cut(s) 265
BssMI GATC 2 cut(s) 74, 259
Bst4CI ACNGT 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 2 cut(s) 77, 262
BstMBI GATC 2 cut(s) 74, 259
BstMWI GCNNNNNNNGC 3 cut(s) 68, 164, 472
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 12
BsuRI GGCC 3 cut(s) 131, 251, 357
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 249, 374
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
DpnI GATC 2 cut(s) 76, 261
DpnII GATC 2 cut(s) 74, 259
Eco47I GGWCC 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 249
FaiI YATR 5 cut(s) 161, 163, 165, 338, 503
FalI AAGNNNNNCTT 2 cut(s) 105, 137
Fnu4HI GCNGC 3 cut(s) 26, 442, 473
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 26, 442, 473
FspBI CTAG 2 cut(s) 246, 449
GlaI GCGC 1 cut(s) 476
GluI GCNGC 3 cut(s) 26, 442, 473
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 3 cut(s) 131, 251, 357
HhaI GCGC 1 cut(s) 477
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 109, 189, 402
Hpy188III TCNNGA 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 121, 184, 406
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 6 cut(s) 28, 56, 97, 167, 226, 492
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 164, 472
HpySE526I ACGT 1 cut(s) 118
HspAI GCGC 1 cut(s) 475
Kzo9I GATC 2 cut(s) 74, 259
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 2 cut(s) 43, 373
MaeI CTAG 2 cut(s) 246, 449
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 76, 261
MbiI CCGCTC 2 cut(s) 444, 472
MboI GATC 2 cut(s) 74, 259
MboII GAAGA 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 181, 333
MluCI AATT 2 cut(s) 339, 369
MnlI CCTC 2 cut(s) 368, 409
MseI TTAA 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 68, 164, 472
NdeII GATC 2 cut(s) 74, 259
PkrI GCNGC 3 cut(s) 27, 443, 474
PspPI GGNCC 2 cut(s) 249, 374
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
PstI CTGCAG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 3 cut(s) 26, 442, 473
Sau3AI GATC 2 cut(s) 74, 259
Sau96I GGNCC 2 cut(s) 249, 374
SduI GDGCHC 2 cut(s) 181, 333
SetI ASST 6 cut(s) 33, 64, 121, 318, 427, 463
SfaNI GCATC 2 cut(s) 43, 373
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 1 cut(s) 374
Sse9I AATT 2 cut(s) 339, 369
SsiI CCGC 2 cut(s) 442, 472
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 246, 449
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 121
TasI AATT 2 cut(s) 339, 369
TauI GCSGC 2 cut(s) 444, 475
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 4 cut(s) 126, 293, 297, 325
VpaK11BI GGWCC 1 cut(s) 374
XspI CTAG 2 cut(s) 246, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.