Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005794

Physical Location & Seq

Genomic Coordinates Reverse (-)

56078298 .. 56078840

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0422500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCCTCCTCCCCCGACCACAACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAACCGGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCTGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGCCATCGTCCTCAGTTGGTTGTTCCGGCGGTTTTGGACTTTGTCAATAGGTTTGAAGGCGGAATTGAGGGGATCAGGAAGAGAAATCATGAGACTGTTGTTGAGATGGGGCAGATGTTGGCGGAGCGATGATCAGAGTGGAGGTCGGAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

180

Amino Acids

20.27

Weight (kDa)

9.38

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18030 AT1G18030
fragaria_vesca	FvH4_5g16840 FvH4_5g16840 FvH4_5g16840 FvH4_5g16840 FvH4_5g16840
malus_domestica	MD06G1222300.v1.1
prunus_persica	Prupe.5G226800_v2.0.a1 Prupe.5G226800_v2.0.a1 Prupe.5G226800_v2.0.a1 Prupe.5G226800_v2.0.a1
pyrus_communis	pycom06g19780
rosa_chinensis	RchiOBHm_Chr7g0179231
rosa_laevigata	RLG00000005371
rosa_multiflora	Rmu_co8321161.1_g000001 Rmu_sc0009798.1_g000003
rosa_roxburghii	Rroxscaffold_3G00274200
rosa_rugosa	Rorug04G0053600 Rorug06G0422500 Rorug06G0422600
rosa_samantha	Rh7AG021700 Rh7AG021800 Rh7BG021700 Rh7CG022900 Rh7CG023000 Rh7DG022300
rosa_wichuraiana	Rw7G001790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	2 cut(s)	312, 330
AclWI	GGATC	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	286, 367
AgsI	TTSAA	2 cut(s)	244, 442
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	186, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	2 cut(s)	159, 208
AluI	AGCT	2 cut(s)	159, 208
Alw26I	GTCTC	2 cut(s)	325, 472
AlwI	GGATC	1 cut(s)	466
AoxI	GGCC	3 cut(s)	3, 189, 369
ApeKI	GCWGC	3 cut(s)	156, 205, 347
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	3 cut(s)	165, 190, 289
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	2 cut(s)	165, 289
BbvI	GCAGC	3 cut(s)	168, 217, 334
BccI	CCATC	4 cut(s)	332, 362, 398, 486
BceAI	ACGGC	2 cut(s)	58, 169
BciT130I	CCWGG	2 cut(s)	188, 376
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	325, 472
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	7 cut(s)	108, 157, 199, 206, 348, 351, 372
BlsI	GCNGC	7 cut(s)	109, 158, 200, 207, 349, 352, 373
Bme1390I	CCNGG	2 cut(s)	188, 376
Bme18I	GGWCC	2 cut(s)	165, 289
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	165, 190, 289
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	188, 376
BmsI	GCATC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	170, 347
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 367
Bse118I	RCCGGY	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	188, 376
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	286, 367
BseMII	CTCAG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	168, 217, 334
BseYI	CCCAGC	2 cut(s)	192, 222
BshFI	GGCC	3 cut(s)	5, 191, 371
BsiSI	CCGG	2 cut(s)	258, 412
BslI	CCNNNNNNNGG	2 cut(s)	286, 367
BsmAI	GTCTC	2 cut(s)	325, 472
BsnI	GGCC	3 cut(s)	5, 191, 371
Bso31I	GGTCTC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	229, 458, 517
BspANI	GGCC	3 cut(s)	5, 191, 371
BspCNI	CTCAG	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	229, 458, 517
Bst2UI	CCWGG	2 cut(s)	188, 376
Bst4CI	ACNGT	2 cut(s)	136, 483
Bst6I	CTCTTC	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	203, 369
BstDEI	CTNAG	1 cut(s)	398
BstENI	CCTNNNNNAGG	2 cut(s)	284, 365
BstF5I	GGATG	1 cut(s)	261
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	3 cut(s)	232, 461, 520
BstMAI	GTCTC	2 cut(s)	325, 472
BstMBI	GATC	3 cut(s)	229, 458, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 344
BstNI	CCWGG	2 cut(s)	188, 376
BstSCI	CCNGG	2 cut(s)	186, 374
BstV1I	GCAGC	3 cut(s)	168, 217, 334
BsuRI	GGCC	3 cut(s)	5, 191, 371
BtgZI	GCGATG	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	203, 369
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	165, 190, 289
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	475
CviJI	RGCY	8 cut(s)	5, 73, 159, 191, 208, 226, 371, 381
CviKI_1	RGCY	8 cut(s)	5, 73, 159, 191, 208, 226, 371, 381
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	3 cut(s)	231, 460, 519
DpnII	GATC	3 cut(s)	229, 458, 517
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	3 cut(s)	376, 461, 523
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	165, 289
EcoNI	CCTNNNNNAGG	2 cut(s)	284, 365
EcoO109I	RGGNCCY	2 cut(s)	165, 289
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	186, 374
FaeI	CATG	1 cut(s)	478
FaiI	YATR	1 cut(s)	476
FatI	CATG	1 cut(s)	474
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	2 cut(s)	312, 330
Fnu4HI	GCNGC	7 cut(s)	108, 157, 199, 206, 348, 351, 372
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	7 cut(s)	108, 157, 199, 206, 348, 351, 372
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	7 cut(s)	108, 157, 199, 206, 348, 351, 372
GsaI	CCCAGC	2 cut(s)	196, 226
GsuI	CTGGAG	2 cut(s)	170, 347
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	5, 191, 371
HapII	CCGG	2 cut(s)	258, 412
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	2 cut(s)	313, 331
HindII	GTYRAC	2 cut(s)	313, 331
HinfI	GANTC	3 cut(s)	47, 144, 176
HpaII	CCGG	2 cut(s)	258, 412
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	313, 331
Hpy188I	TCNGA	3 cut(s)	100, 522, 534
Hpy188III	TCNNGA	2 cut(s)	462, 475
Hpy8I	GTNNAC	2 cut(s)	313, 331
Hpy99I	CGWCG	4 cut(s)	140, 314, 317, 332
HpyAV	CCTTC	2 cut(s)	94, 436
HpyCH4III	ACNGT	2 cut(s)	136, 483
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 344
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	478
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	229, 458, 517
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	3 cut(s)	168, 217, 334
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	1 cut(s)	309
MalI	GATC	3 cut(s)	231, 460, 519
MboI	GATC	3 cut(s)	229, 458, 517
MboII	GAAGA	1 cut(s)	477
MluCI	AATT	2 cut(s)	113, 449
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	75, 512
MspA1I	CMGCKG	2 cut(s)	201, 347
MspI	CCGG	2 cut(s)	258, 412
MspR9I	CCNGG	2 cut(s)	188, 376
MvaI	CCWGG	2 cut(s)	188, 376
MwoI	GCNNNNNNNGC	2 cut(s)	202, 344
NdeII	GATC	3 cut(s)	229, 458, 517
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 306
PfeI	GAWTC	2 cut(s)	47, 144
PflFI	GACNNNGTC	4 cut(s)	179, 308, 317, 427
PkrI	GCNGC	7 cut(s)	109, 158, 200, 207, 349, 352, 373
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	2 cut(s)	165, 289
Psp5II	RGGWCCY	2 cut(s)	165, 289
Psp6I	CCWGG	2 cut(s)	186, 374
PspFI	CCCAGC	2 cut(s)	192, 222
PspGI	CCWGG	2 cut(s)	186, 374
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	165, 190, 289
PspPPI	RGGWCCY	2 cut(s)	165, 289
PsyI	GACNNNGTC	4 cut(s)	179, 308, 317, 427
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SalI	GTCGAC	2 cut(s)	311, 329
SatI	GCNGC	7 cut(s)	108, 157, 199, 206, 348, 351, 372
Sau3AI	GATC	3 cut(s)	229, 458, 517
Sau96I	GGNCC	3 cut(s)	165, 190, 289
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	188, 376
SfaNI	GCATC	1 cut(s)	270
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	165, 289
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	113, 449
StyD4I	CCNGG	2 cut(s)	186, 374
TaaI	ACNGT	2 cut(s)	136, 483
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	312, 330
TasI	AATT	2 cut(s)	113, 449
TauI	GCSGC	4 cut(s)	110, 201, 353, 374
TfiI	GAWTC	2 cut(s)	47, 144
TseI	GCWGC	3 cut(s)	156, 205, 347
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	169
Tth111I	GACNNNGTC	4 cut(s)	179, 308, 317, 427
VpaK11BI	GGWCC	2 cut(s)	165, 289
XagI	CCTNNNNNAGG	2 cut(s)	284, 365
XapI	RAATTY	1 cut(s)	113
XmiI	GTMKAC	2 cut(s)	312, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.