AT1G18170

peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011742
Physical Location & Seq
Forward (+)
6254094 .. 6255734
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18170.1

Sequence Viewer

Length: 744 bp
ATGGCGAATCTGTTCACTGCTACGGCTCCTTTCCTCTCACTCTCGAAGCCATTCACCAAAACGGCATCGTACCACCAGTGTTACGCCTCTTCTTCCAATCCGCCGGAGCCTGAGTCTTCTTCTCCTCCTCCTCCTCCGCCTCCGCCTCAACCGCTGGCATCGCAACAGAAGAGGAAGAAGAACGTTGAGACGACGGATTGGGTCGCTTCTTCCTTGACCCGGCGGTTTGGAATCGGCGCGGGTCTTGCCTGGGCGGGCTTTCTGGCTTTCGGTGTAATCTCCGAGCAGATCAAGACTCGGATTGAGGTTTCTCAGGAAGTAGCTAACACCAGAGATGTAGAAGAAGAGAAAGAGATTGTGTTGCCCAACGGCATAAGGTACTATGATCAACGGGTTGGAGGAGGAGCAACACCAAGAGCAGGAGACTTGGTAGTGATTGATCTAAAGGGGCAAGTGCAAGGAACCGGACAAGTATTCGTGGATACATTTGGAACCAAAGACAAGAAGAAGATGAAGCCATTGGCACTTGTGGTGGGTTCAAAACCATATAGCAAAGGATTATGTGAAGGCATAGATTATGTACTAAGGTCCATGAAGGCTGGAGGTAAACGCAGAGTGATTGTTCCACCATCGTTAGGATTTGGTGTAGACGGTGCTGAATTGGAATCGGGTTTGCAGATTCCTCCTAATGCTTCGTTGGAATATATAGTTGAGATTGATAGAGTCTCAATTGCACCAGCTTGA

Protein Analysis

247

Amino Acids

26.53

Weight (kDa)

8.97

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 136 - 239 1.4e-17 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011742)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18170 AT1G73655
malus_domestica MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica Prupe.5G231900_v2.0.a1
pyrus_communis pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis RchiOBHm_Chr7g0178601
rosa_laevigata RLG00000005433
rosa_multiflora Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii Rroxscaffold_3G00274770
rosa_rugosa Rorug06G0418300
rosa_samantha Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana Rw7G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 239
AciI CCGC 7 cut(s) 101, 137, 143, 152, 223, 239, 254
AclI AACGTT 1 cut(s) 183
AfaI GTAC 3 cut(s) 71, 380, 582
AfiI CCNNNNNNNGG 3 cut(s) 219, 419, 635
AgsI TTSAA 1 cut(s) 540
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 2 cut(s) 323, 740
AluI AGCT 2 cut(s) 323, 740
Alw26I GTCTC 3 cut(s) 182, 417, 730
Asp700I GAANNNNTTC 2 cut(s) 11, 50
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 588
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 108
BccI CCATC 1 cut(s) 637
BceAI ACGGC 3 cut(s) 39, 78, 385
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 475
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 3 cut(s) 182, 417, 730
BfuI GTATCC 1 cut(s) 475
Bme1390I CCNGG 2 cut(s) 220, 250
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 4 cut(s) 27, 108, 463, 493
BmrFI CCNGG 2 cut(s) 220, 250
BmsI GCATC 2 cut(s) 74, 167
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 419, 635
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 3 cut(s) 219, 419, 635
BseMII CTCAG 2 cut(s) 102, 326
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 6 cut(s) 114, 117, 120, 123, 414, 417
Bsh1236I CGCG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 104, 220, 465
BslI CCNNNNNNNGG 3 cut(s) 219, 419, 635
BsmAI GTCTC 3 cut(s) 182, 417, 730
BsmBI CGTCTC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 288, 385, 439
BspACI CCGC 7 cut(s) 101, 137, 143, 152, 223, 239, 254
BspCNI CTCAG 2 cut(s) 103, 325
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 4 cut(s) 27, 108, 463, 493
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 288, 385, 439
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 653
Bst6I CTCTTC 3 cut(s) 94, 164, 339
BstC8I GCNNGC 2 cut(s) 156, 256
BstDEI CTNAG 3 cut(s) 111, 312, 584
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 291, 388, 442
BstMAI GTCTC 3 cut(s) 182, 417, 730
BstMBI GATC 3 cut(s) 288, 385, 439
BstMWI GCNNNNNNNGC 3 cut(s) 151, 160, 245
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 218, 248
BstUI CGCG 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 108
BsuI GTATCC 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 83
Cac8I GCNNGC 2 cut(s) 156, 256
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 588
Csp6I GTAC 3 cut(s) 70, 379, 581
CviAII CATG 1 cut(s) 592
CviJI RGCY 9 cut(s) 26, 49, 109, 258, 266, 323, 517, 599, 740
CviKI_1 RGCY 9 cut(s) 26, 49, 109, 258, 266, 323, 517, 599, 740
CviQI GTAC 3 cut(s) 70, 379, 581
DdeI CTNAG 3 cut(s) 111, 312, 584
DpnI GATC 3 cut(s) 290, 387, 441
DpnII GATC 3 cut(s) 288, 385, 439
Eam1104I CTCTTC 3 cut(s) 94, 164, 339
EarI CTCTTC 3 cut(s) 94, 164, 339
EciI GGCGGA 3 cut(s) 90, 126, 132
Eco47I GGWCC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 248
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 1 cut(s) 595
FatI CATG 1 cut(s) 591
FauI CCCGC 2 cut(s) 232, 247
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 648
GlaI GCGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 621
HapII CCGG 3 cut(s) 104, 220, 465
HhaI GCGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 595
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 7 cut(s) 7, 113, 231, 295, 665, 679, 723
HpaII CCGG 3 cut(s) 104, 220, 465
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 15, 608, 649
Hpy188I TCNGA 2 cut(s) 283, 300
Hpy188III TCNNGA 3 cut(s) 43, 292, 314
Hpy8I GTNNAC 3 cut(s) 15, 608, 649
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 560, 589
HpyCH4III ACNGT 1 cut(s) 653
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 457, 676, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 160, 245
HpyF3I CTNAG 3 cut(s) 111, 312, 584
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 595
HspAI GCGC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 288, 385, 439
LmnI GCTCC 3 cut(s) 31, 106, 404
LweI GCATC 2 cut(s) 74, 167
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 290, 387, 441
MboI GATC 3 cut(s) 288, 385, 439
MfeI CAATTG 1 cut(s) 729
MluCI AATT 2 cut(s) 659, 729
MlyI GAGTC 3 cut(s) 122, 289, 732
MmeI TCCRAC 2 cut(s) 376, 678
MroXI GAANNNNTTC 2 cut(s) 11, 50
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 3 cut(s) 104, 220, 465
MspR9I CCNGG 2 cut(s) 220, 250
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 151, 160, 245
NciI CCSGG 1 cut(s) 220
NdeII GATC 3 cut(s) 288, 385, 439
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 4 cut(s) 27, 108, 463, 493
PdmI GAANNNNTTC 2 cut(s) 11, 50
PfeI GAWTC 4 cut(s) 7, 231, 665, 679
PleI GAGTC 3 cut(s) 121, 289, 731
PpsI GAGTC 3 cut(s) 121, 289, 731
Psp1406I AACGTT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 4 cut(s) 27, 108, 463, 493
PspPI GGNCC 1 cut(s) 588
RsaI GTAC 3 cut(s) 71, 380, 582
RsaNI GTAC 3 cut(s) 70, 379, 581
Sau3AI GATC 3 cut(s) 288, 385, 439
Sau96I GGNCC 1 cut(s) 588
SchI GAGTC 3 cut(s) 122, 289, 732
ScrFI CCNGG 2 cut(s) 220, 250
SetI ASST 7 cut(s) 186, 309, 325, 380, 590, 607, 742
SfaNI GCATC 2 cut(s) 74, 167
SinI GGWCC 1 cut(s) 588
Sse9I AATT 2 cut(s) 659, 729
SsiI CCGC 7 cut(s) 101, 137, 143, 152, 223, 239, 254
StyD4I CCNGG 2 cut(s) 218, 248
TaaI ACNGT 1 cut(s) 653
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 659, 729
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 4 cut(s) 7, 231, 665, 679
TscAI CASTG 2 cut(s) 22, 83
TspDTI ATGAA 2 cut(s) 527, 608
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 2 cut(s) 22, 83
VpaK11BI GGWCC 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 2 cut(s) 11, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.