Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

23325072 .. 23326039

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCTCCTTCTCTGGTTCTTCACCATTTATCTCCCACTCTCTAACAAGACCAAACCACTTCTCTCCTTGTTCATCGCAAACGCCGCCACCTCCGCCCCAAAATCTGCCTTCACAACCGCCTCATTCTCCGACGCCAATTCAGCAGCTCAGCACAAGTTCATCCGAGCAGCCGCCGACATCGGTAAAAGCAGAGCAGCAGAAGCCTTCCAATACCAAAACCAAGGCAGACTCCACAGACTGGATAGCTTCCACCTTGACAAGGAGGTTTGGGATTGGTGCTGGCCTTGCTTGGGCTGCCTTTCTCACAGTTGGTGTTGTCTCTGAGCAAATTAAGACCCGCCTTGAGGTCTCCCAACAAGAATCAAACACAAGAAACGTTGAGAAAGAAGAAGAGGTGGTGTTACCTAATGGAATAAGATACTACGAGCTAAGAGTTGGTGGCGGGGCTACTCCGAGGCCAGGGGACTTGGTGGTGATCGACCTGAAGGGCAAAGTAGAAGGCAGCGGACTGGTGTTTGTGGACACATTTGAGAGAGAGAAGAAGCCGTTGGCTCTGGTGGTAGGGTCAAGGCAGCCTTACAGCAAGGGAGTGTGTGAAGGGATAGAATATGTGATGAGATCCATGAAGGCAGGAGGCAAAAGGAGAGTGGTGGTTCCTCCAAGCTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAATTCCTCCTTTTGCAACCCTAGACTATATTATTGAGGTTGACAGAGTCTCAATTGCACCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

259

Amino Acids

27.71

Weight (kDa)

8.5

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AciI	CCGC	7 cut(s)	86, 95, 119, 173, 340, 444, 507
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
AjnI	CCWGG	2 cut(s)	460, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AluBI	AGCT	4 cut(s)	148, 248, 430, 666
AluI	AGCT	4 cut(s)	148, 248, 430, 666
Alw26I	GTCTC	3 cut(s)	325, 355, 763
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	4 cut(s)	3, 283, 458, 697
ApeKI	GCWGC	6 cut(s)	145, 169, 196, 296, 504, 574
ApoI	RAATTY	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	2 cut(s)	15, 487
BbvI	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	462, 702
BcoDI	GTCTC	3 cut(s)	325, 355, 763
BfaI	CTAG	1 cut(s)	731
BisI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	8 cut(s)	87, 147, 171, 174, 198, 298, 506, 576
Bme1390I	CCNGG	2 cut(s)	462, 702
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	2 cut(s)	462, 702
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	222, 455, 461, 700
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
Bse1I	ACTGG	2 cut(s)	245, 516
BseBI	CCWGG	2 cut(s)	462, 702
BseDI	CCNNGG	4 cut(s)	222, 455, 461, 700
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
BseMII	CTCAG	2 cut(s)	163, 315
BseNI	ACTGG	2 cut(s)	245, 516
BseXI	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	5, 285, 460, 699
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 461, 668
BsmAI	GTCTC	3 cut(s)	325, 355, 763
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	4 cut(s)	5, 285, 460, 699
Bso31I	GGTCTC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	477, 620
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	7 cut(s)	86, 95, 119, 173, 340, 444, 507
BspANI	GGCC	4 cut(s)	5, 285, 460, 699
BspCNI	CTCAG	2 cut(s)	162, 316
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	245, 516
BssECI	CCNNGG	4 cut(s)	222, 455, 461, 700
BssMI	GATC	2 cut(s)	477, 620
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	462, 702
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	149, 324, 431
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	480, 623
BstMAI	GTCTC	3 cut(s)	325, 355, 763
BstMBI	GATC	2 cut(s)	477, 620
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 94, 142, 202, 287, 296
BstNI	CCWGG	2 cut(s)	462, 702
BstSCI	CCNGG	2 cut(s)	460, 700
BstV1I	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	4 cut(s)	5, 285, 460, 699
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	1 cut(s)	142
CviAII	CATG	2 cut(s)	625, 774
DdeI	CTNAG	3 cut(s)	149, 324, 431
DpnI	GATC	2 cut(s)	479, 622
DpnII	GATC	2 cut(s)	477, 620
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	460, 700
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	628, 777
FaiI	YATR	4 cut(s)	612, 626, 738, 775
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	624, 773
FauI	CCCGC	2 cut(s)	347, 437
Fnu4HI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
FspBI	CTAG	1 cut(s)	731
GluI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
HaeIII	GGCC	4 cut(s)	5, 285, 460, 699
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	628, 777
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	3 cut(s)	230, 362, 756
HphI	GGTGA	2 cut(s)	15, 487
Hpy166II	GTNNAC	2 cut(s)	523, 751
Hpy188I	TCNGA	4 cut(s)	132, 166, 325, 456
Hpy8I	GTNNAC	2 cut(s)	523, 751
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	7 cut(s)	19, 120, 216, 481, 494, 593, 622
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	689, 709, 725, 767, 773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 94, 142, 202, 287, 296
HpyF3I	CTNAG	3 cut(s)	149, 324, 431
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	628, 777
Kzo9I	GATC	2 cut(s)	477, 620
Lsp1109I	GCAGC	6 cut(s)	157, 181, 208, 283, 516, 586
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	2 cut(s)	479, 622
MboI	GATC	2 cut(s)	477, 620
MboII	GAAGA	4 cut(s)	12, 401, 404, 553
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	620
MluCI	AATT	4 cut(s)	138, 330, 711, 762
MlyI	GAGTC	2 cut(s)	224, 765
MmeI	TCCRAC	1 cut(s)	155
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	507
MspR9I	CCNGG	2 cut(s)	462, 702
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	2 cut(s)	462, 702
MwoI	GCNNNNNNNGC	6 cut(s)	85, 94, 142, 202, 287, 296
NdeII	GATC	2 cut(s)	477, 620
NlaIII	CATG	2 cut(s)	628, 777
NlaIV	GGNNCC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	362
PflFI	GACNNNGTC	1 cut(s)	755
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	8 cut(s)	87, 147, 171, 174, 198, 298, 506, 576
PleI	GAGTC	2 cut(s)	224, 764
PpsI	GAGTC	2 cut(s)	224, 764
Psp1406I	AACGTT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	460, 700
PspGI	CCWGG	2 cut(s)	460, 700
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	620
PsyI	GACNNNGTC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	8 cut(s)	86, 146, 170, 173, 197, 297, 505, 575
Sau3AI	GATC	2 cut(s)	477, 620
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	2 cut(s)	224, 765
ScrFI	CCNGG	2 cut(s)	462, 702
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	138, 330, 711, 762
SsiI	CCGC	7 cut(s)	86, 95, 119, 173, 340, 444, 507
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	2 cut(s)	460, 700
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	480
TasI	AATT	4 cut(s)	138, 330, 711, 762
TauI	GCSGC	2 cut(s)	88, 175
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	6 cut(s)	145, 169, 196, 296, 504, 574
TspDTI	ATGAA	3 cut(s)	63, 150, 641
Tth111I	GACNNNGTC	1 cut(s)	755
Van91I	CCANNNNNTGG	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	711
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.