Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

1226658 .. 1228095

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTGCCTTCTCTGGTTCTTCACCATTTCTCTCCCACACCTTAACAAGACCAAACCATTTTGCGTCATCACAAACACCTCCTCCTCCTCCTCCGCCAAATATTCCTTCACAACCAAACGCTCCAACACCACTTCAAAGTACAACTTCATCATCCGAGCAGCAAAAGCCTGTCTCAGTAAAAGTGGAGCAACAAAAGCCCTCCAAGACAAAGGCTGACTCTACAGATTGGATAGCTTCGAGCTTAACCAGGCGGTTTGGGCTTGGAGCTGGCCTCGCCTGGGCTACCTTTCTTGCAGTTGGTGTAGTCTCCGAACAGGTTAAGACCCGCCTTGAAGTCTCTGAACAAGAAGCTAACACAAGAAATGTTGAGAAAGAAGAAGAGGTAGTGTTACCTAATGGCATAAGATACTACGAGTTGAGAGTTGGTGGCGGGGCAACTCCGAGGCCAGGAGACTTGGTGGTGATCGAGCTCAAGGGGGAGGTAGCAGGCACTGGGCAAGTGTTTGTGAATACAATTGAGAATGACAAGAAGAGGCCTTTGGCTCTAGTGATGGGGTCTAGGCCTTACAGCAAAGGACTATGTGAAGGGATAGAATATGTGCTCAGATCAATGAAGGCTGGGGGTAAAAGAAGAGTAATAGTTCCTCCAAACTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAGTTCCTCCTTCTGCAACTCTAGAGTATACTATTGAGATTGAAAGAGTCTCAATTGCACCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

254

Amino Acids

27.15

Weight (kDa)

8.62

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	146 - 246	6.7e-18	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	4 cut(s)	95, 253, 328, 432
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	280, 449, 656
AgsI	TTSAA	3 cut(s)	137, 335, 740
AjnI	CCWGG	4 cut(s)	248, 278, 448, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 524, 556
AluBI	AGCT	5 cut(s)	236, 243, 269, 353, 472
AluI	AGCT	5 cut(s)	236, 243, 269, 353, 472
Alw21I	GWGCWC	2 cut(s)	474, 606
Alw26I	GTCTC	5 cut(s)	178, 313, 343, 447, 751
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	5 cut(s)	271, 446, 536, 563, 685
ApeKI	GCWGC	2 cut(s)	5, 160
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	15, 475
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	474, 606
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	547
BciT130I	CCWGG	4 cut(s)	250, 280, 450, 690
BcoDI	GTCTC	5 cut(s)	178, 313, 343, 447, 751
BfaI	CTAG	3 cut(s)	548, 561, 719
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	6, 161
BlsI	GCNGC	2 cut(s)	7, 162
Bme1390I	CCNGG	4 cut(s)	250, 280, 450, 690
BmgT120I	GGNCC	1 cut(s)	686
BmrFI	CCNGG	4 cut(s)	250, 280, 450, 690
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpuEI	CTTGAG	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	279, 443, 688
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 444, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 449, 656
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	4 cut(s)	250, 280, 450, 690
BseDI	CCNNGG	3 cut(s)	279, 443, 688
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	280, 449, 656
BseMII	CTCAG	2 cut(s)	189, 619
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 81
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BsiHKAI	GWGCWC	2 cut(s)	474, 606
BslI	CCNNNNNNNGG	3 cut(s)	280, 449, 656
BsmAI	GTCTC	5 cut(s)	178, 313, 343, 447, 751
BsnI	GGCC	5 cut(s)	273, 448, 538, 565, 687
Bsp1286I	GDGCHC	2 cut(s)	474, 606
Bsp143I	GATC	2 cut(s)	465, 608
BspACI	CCGC	4 cut(s)	95, 253, 328, 432
BspANI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BspCNI	CTCAG	2 cut(s)	188, 618
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	3 cut(s)	279, 443, 688
BssMI	GATC	2 cut(s)	465, 608
BssNAI	GTATAC	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	726
Bst2UI	CCWGG	4 cut(s)	250, 280, 450, 690
Bst6I	CTCTTC	3 cut(s)	375, 527, 628
BstC8I	GCNNGC	2 cut(s)	271, 490
BstDEI	CTNAG	2 cut(s)	175, 605
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	2 cut(s)	468, 611
BstMAI	GTCTC	5 cut(s)	178, 313, 343, 447, 751
BstMBI	GATC	2 cut(s)	465, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 196, 259, 275
BstNI	CCWGG	4 cut(s)	250, 280, 450, 690
BstSCI	CCNGG	4 cut(s)	248, 278, 448, 688
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	726
BsuRI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	271, 490
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	686
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	141
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	175, 605
DpnI	GATC	2 cut(s)	467, 610
DpnII	GATC	2 cut(s)	465, 608
Eam1104I	CTCTTC	3 cut(s)	375, 527, 628
EarI	CTCTTC	3 cut(s)	375, 527, 628
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	472
Eco147I	AGGCCT	2 cut(s)	538, 565
Eco24I	GRGCYC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	4 cut(s)	248, 278, 448, 688
EcoT38I	GRGCYC	1 cut(s)	474
FaiI	YATR	5 cut(s)	404, 583, 600, 726, 763
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FauI	CCCGC	2 cut(s)	335, 425
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	2 cut(s)	6, 161
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	6, 161
FspBI	CTAG	3 cut(s)	548, 561, 719
GluI	GCNGC	2 cut(s)	6, 161
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	5 cut(s)	273, 448, 538, 565, 687
HgaI	GACGC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	218, 744
HphI	GGTGA	2 cut(s)	15, 475
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	5 cut(s)	157, 313, 343, 444, 608
Hpy188III	TCNNGA	1 cut(s)	719
Hpy8I	GTNNAC	1 cut(s)	726
HpyAV	CCTTC	5 cut(s)	19, 117, 581, 610, 717
HpyCH4V	TGCA	5 cut(s)	296, 677, 697, 713, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 196, 259, 275
HpyF3I	CTNAG	2 cut(s)	175, 605
Kzo9I	GATC	2 cut(s)	465, 608
LmnI	GCTCC	3 cut(s)	127, 187, 266
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	3 cut(s)	548, 561, 719
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	2 cut(s)	467, 610
MboI	GATC	2 cut(s)	465, 608
MboII	GAAGA	5 cut(s)	12, 389, 392, 544, 645
MfeI	CAATTG	2 cut(s)	516, 750
MhlI	GDGCHC	2 cut(s)	474, 606
MluCI	AATT	2 cut(s)	516, 750
MlyI	GAGTC	2 cut(s)	212, 753
MmeI	TCCRAC	1 cut(s)	149
MseI	TTAA	3 cut(s)	44, 245, 321
MspR9I	CCNGG	4 cut(s)	250, 280, 450, 690
MunI	CAATTG	2 cut(s)	516, 750
MvaI	CCWGG	4 cut(s)	250, 280, 450, 690
MwoI	GCNNNNNNNGC	4 cut(s)	166, 196, 259, 275
NdeII	GATC	2 cut(s)	465, 608
PceI	AGGCCT	2 cut(s)	538, 565
PkrI	GCNGC	2 cut(s)	7, 162
PleI	GAGTC	2 cut(s)	212, 752
PpsI	GAGTC	2 cut(s)	212, 752
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	4 cut(s)	248, 278, 448, 688
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	4 cut(s)	248, 278, 448, 688
PspPI	GGNCC	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	44, 245, 321
SatI	GCNGC	2 cut(s)	6, 161
Sau3AI	GATC	2 cut(s)	465, 608
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	2 cut(s)	212, 753
ScrFI	CCNGG	4 cut(s)	250, 280, 450, 690
SduI	GDGCHC	2 cut(s)	474, 606
SfcI	CTRYAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	516, 750
SseBI	AGGCCT	2 cut(s)	538, 565
SsiI	CCGC	4 cut(s)	95, 253, 328, 432
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	3 cut(s)	548, 561, 719
SstI	GAGCTC	1 cut(s)	474
StuI	AGGCCT	2 cut(s)	538, 565
StyD4I	CCNGG	4 cut(s)	248, 278, 448, 688
TaqI	TCGA	2 cut(s)	239, 468
TasI	AATT	2 cut(s)	516, 750
TatI	WGTACW	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	44, 245, 321
Tru9I	TTAA	3 cut(s)	44, 245, 321
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	2 cut(s)	5, 160
TspDTI	ATGAA	2 cut(s)	138, 629
TspRI	CASTG	1 cut(s)	499
XbaI	TCTAGA	1 cut(s)	718
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	3 cut(s)	548, 561, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.