Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

31516390 .. 31517765

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1235200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCTCCTTCGGTAGTACTTCCCCATTTATCTCCCACTCTCTAACAAGACCAAACCACTTCTCTCCTTCCTCATCACAAACGCCGCTGCCTCCGCCACAAAATCTTCCACCACAACCGCCTCATTCTCCGACACCAATTCAGCAGCTCAGCACAAGTTCATCCGAGCAGCCGCCGACGCCGGTAAAAGAAGAGCAGCTAAAGCCATCCAAGACCAAAACCAAGGCAGACTCCCCAGACTGGATAGCTTCCACGTTGACCAGAAGGTTTGGGATTGGTGCTGGCCTTGCCTGGGCTGCCTTTCTCACGGTTGGTGTTGTCTCTGAGCAAATTAAAACCCGCTTTGAAGTCTCCCAACAAGAATCAAACACAAGGAATGCTGAGAAAGAAGAAGAGGTGGTGTTACCTAATGGCATAAGATACTACGAGATAAGAGTGAGCGGCGGAGCTACTCCGAGGCCGGGGGACTTGGTGGTGATCGACCTGAAGGGCAAAGTAGAAGGCAGCGAACTAGTTTTTGTGGACACATTTGAGCGGGAGAAGAAGCCATTGGCTCTGGTGGTGGGGTCCAGGCAGCCATACAGCAAAGGAGTATGTGAAGGGATAGAGTATATGATGAGATCCATGAAGGCAGGTAGCAAAAGGAGAGTGGTGGTTCCTCCAAGCTTGGGGTTTGGAGAAAATGGTGCAGATTTGGGTCGTGGTCTGCAAATTCCTCCTTCTGCAACCCTAGAGTATATTATTGAGGTTGATAGAGTCTCAATTGCATCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

259

Amino Acids

27.97

Weight (kDa)

8.61

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	150 - 250	5.5e-18	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AccBSI	CCGCTC	2 cut(s)	441, 535
AciI	CCGC	8 cut(s)	86, 95, 119, 173, 340, 441, 444, 535
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	4 cut(s)	240, 292, 461, 668
AgsI	TTSAA	1 cut(s)	347
AhlI	ACTAGT	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	290, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AluBI	AGCT	5 cut(s)	148, 199, 248, 449, 666
AluI	AGCT	5 cut(s)	148, 199, 248, 449, 666
Alw26I	GTCTC	3 cut(s)	325, 355, 763
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	3 cut(s)	3, 283, 458
ApeKI	GCWGC	7 cut(s)	88, 145, 169, 196, 296, 504, 574
ApoI	RAATTY	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	567
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	487
AvaII	GGWCC	1 cut(s)	567
BbvI	GCAGC	7 cut(s)	75, 157, 181, 208, 283, 516, 586
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	292, 571
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	325, 355, 763
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	2 cut(s)	512, 731
BfuAI	ACCTGC	1 cut(s)	623
BlpI	GCTNAGC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	292, 462, 571
Bme18I	GGWCC	1 cut(s)	567
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	2 cut(s)	568, 657
BmrFI	CCNGG	3 cut(s)	292, 462, 571
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	179
BsaJI	CCNNGG	4 cut(s)	222, 291, 455, 461
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 292, 461, 668
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	292, 571
BseDI	CCNNGG	4 cut(s)	222, 291, 455, 461
BseGI	GGATG	2 cut(s)	161, 206
BseLI	CCNNNNNNNGG	4 cut(s)	240, 292, 461, 668
BseMII	CTCAG	3 cut(s)	163, 315, 372
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	7 cut(s)	75, 157, 181, 208, 283, 516, 586
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	5, 285, 460
BsiSI	CCGG	2 cut(s)	182, 461
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	4 cut(s)	240, 292, 461, 668
BsmAI	GTCTC	3 cut(s)	325, 355, 763
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	5, 285, 460
Bsp143I	GATC	2 cut(s)	477, 620
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	8 cut(s)	86, 95, 119, 173, 340, 441, 444, 535
BspANI	GGCC	3 cut(s)	5, 285, 460
BspCNI	CTCAG	3 cut(s)	162, 316, 373
BspLI	GGNNCC	2 cut(s)	568, 657
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	615
BspQI	GCTCTTC	1 cut(s)	186
BsrBI	CCGCTC	2 cut(s)	441, 535
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	222, 291, 455, 461
BssMI	GATC	2 cut(s)	477, 620
BssNI	GRCGYC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	292, 571
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	2 cut(s)	186, 387
BstACI	GRCGYC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	149, 324, 381
BstF5I	GGATG	2 cut(s)	161, 206
BstKTI	GATC	2 cut(s)	480, 623
BstMAI	GTCTC	3 cut(s)	325, 355, 763
BstMBI	GATC	2 cut(s)	477, 620
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 178, 202, 287, 296
BstNI	CCWGG	2 cut(s)	292, 571
BstSCI	CCNGG	3 cut(s)	290, 460, 569
BstV1I	GCAGC	7 cut(s)	75, 157, 181, 208, 283, 516, 586
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	3 cut(s)	5, 285, 460
BtsCI	GGATG	2 cut(s)	161, 206
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	567
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	2 cut(s)	625, 774
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	149, 324, 381
DpnI	GATC	2 cut(s)	479, 622
DpnII	GATC	2 cut(s)	477, 620
Eam1104I	CTCTTC	2 cut(s)	186, 387
EarI	CTCTTC	2 cut(s)	186, 387
EciI	GGCGGA	2 cut(s)	84, 459
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	290, 569
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	628, 777
FaiI	YATR	8 cut(s)	416, 580, 595, 612, 614, 626, 738, 775
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	624, 773
FauI	CCCGC	2 cut(s)	347, 528
FokI	GGATG	2 cut(s)	148, 193
FspBI	CTAG	2 cut(s)	512, 731
HaeIII	GGCC	3 cut(s)	5, 285, 460
HapII	CCGG	2 cut(s)	182, 461
HgaI	GACGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	628, 777
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	3 cut(s)	230, 362, 756
HpaII	CCGG	2 cut(s)	182, 461
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	2 cut(s)	258, 523
Hpy188I	TCNGA	4 cut(s)	132, 166, 325, 456
Hpy8I	GTNNAC	2 cut(s)	258, 523
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	8 cut(s)	19, 78, 258, 481, 494, 593, 622, 729
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	5 cut(s)	689, 709, 725, 767, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 178, 202, 287, 296
HpyF3I	CTNAG	3 cut(s)	149, 324, 381
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	628, 777
Kzo9I	GATC	2 cut(s)	477, 620
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	7 cut(s)	75, 157, 181, 208, 283, 516, 586
MaeI	CTAG	2 cut(s)	512, 731
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	2 cut(s)	479, 622
MbiI	CCGCTC	2 cut(s)	441, 535
MboI	GATC	2 cut(s)	477, 620
MboII	GAAGA	5 cut(s)	98, 203, 401, 404, 553
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	620
MluCI	AATT	4 cut(s)	138, 330, 711, 762
MlyI	GAGTC	2 cut(s)	224, 765
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	9 cut(s)	16, 82, 102, 132, 388, 450, 669, 726, 739
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	2 cut(s)	182, 461
MspR9I	CCNGG	3 cut(s)	292, 462, 571
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	292, 571
MwoI	GCNNNNNNNGC	5 cut(s)	94, 178, 202, 287, 296
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	477, 620
NlaIII	CATG	2 cut(s)	628, 777
NlaIV	GGNNCC	2 cut(s)	568, 657
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	362
PleI	GAGTC	2 cut(s)	224, 764
PpsI	GAGTC	2 cut(s)	224, 764
Psp6I	CCWGG	2 cut(s)	290, 569
PspGI	CCWGG	2 cut(s)	290, 569
PspN4I	GGNNCC	2 cut(s)	568, 657
PspPI	GGNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	620
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	772
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	477, 620
Sau96I	GGNCC	1 cut(s)	567
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	2 cut(s)	224, 765
ScrFI	CCNGG	3 cut(s)	292, 462, 571
SinI	GGWCC	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	772
SpeI	ACTAGT	1 cut(s)	511
Sse9I	AATT	4 cut(s)	138, 330, 711, 762
SsiI	CCGC	8 cut(s)	86, 95, 119, 173, 340, 441, 444, 535
SspMI	CTAG	2 cut(s)	512, 731
StyD4I	CCNGG	3 cut(s)	290, 460, 569
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	480
TasI	AATT	4 cut(s)	138, 330, 711, 762
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	3 cut(s)	88, 175, 444
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	7 cut(s)	88, 145, 169, 196, 296, 504, 574
TspDTI	ATGAA	2 cut(s)	150, 641
VpaK11BI	GGWCC	1 cut(s)	567
XapI	RAATTY	1 cut(s)	711
XspI	CTAG	2 cut(s)	512, 731
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.