Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Reverse (-)

66405212 .. 66406229

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGCCTTCTCTGGTTCTTCACCGTTTCTCTCCCACACCTTAACAAGACCAAACCATTTTGCGTCATCACAAACACCTCCTCCTCCTCCGCCAAATATTCCTTCACAACCAAACCCTCCAACACCACTTCAAAGTACAACTTCATCATCTGAGCAGCAAAAGCCTGTCTCAGTAAAAGTGGAGCAACAAAAGCCGTCCAAGACAAAGGCTGACTCTACAGATTGGATAGCTTCGAGCTTAACCAGGCGGTTCGGGCTTGGAGCTGGCCTCGCTTGGGCTACCTTTCTCGCAGTTGGTGTAGTCTCCGAACAGGTTAAGACCCGCCTTGAAGTCTCTGAACAAGAAGCTAACACAAGAAATGTTGAGAAAGAAGAAGAGATACTACGAGTTGAGAGTTGGCGGCGGGGCAACTCCGAGGCCAGGAGACTTGGTGGTGATCGAGCTCAAGGGGAGGTAGCAGGCACTGGGCAAGTGTTTGTGAATACAATTGAGAATGACAAGAAGAGGCCCTTGGCTCTGGTGATGGGGTCTAGGCCTTACAGCAAAGGACTATGTGAAGGGATAGAATATGTGCTCAGATCAATGAAGGCTGGGGGTAAAAGAAGAGTAATAGTTCCTCCAAACTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAGTTCCTCCTTCTGCAACTCTAGAGTATACTATTGAGATTGAAAGAGTCTCAATTGCACCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

245

Amino Acids

26.41

Weight (kDa)

9.26

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	150 - 237	4.5e-14	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	698
AciI	CCGC	5 cut(s)	92, 250, 325, 403, 406
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	277, 423, 629
AgsI	TTSAA	3 cut(s)	134, 332, 713
AjnI	CCWGG	3 cut(s)	245, 422, 661
AjuI	GAANNNNNNNTTGG	4 cut(s)	88, 120, 497, 529
AluBI	AGCT	5 cut(s)	233, 240, 266, 350, 446
AluI	AGCT	5 cut(s)	233, 240, 266, 350, 446
Alw21I	GWGCWC	2 cut(s)	448, 579
Alw26I	GTCTC	5 cut(s)	175, 310, 340, 421, 724
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	5 cut(s)	268, 420, 509, 536, 658
ApeKI	GCWGC	2 cut(s)	5, 157
AspS9I	GGNCC	2 cut(s)	510, 659
AsuHPI	GGTGA	3 cut(s)	15, 449, 535
BanII	GRGCYC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	4 cut(s)	366, 369, 398, 401
Bbv12I	GWGCWC	2 cut(s)	448, 579
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	247, 424, 663
BcoDI	GTCTC	5 cut(s)	175, 310, 340, 421, 724
BfaI	CTAG	2 cut(s)	534, 692
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	3 cut(s)	6, 158, 404
BlsI	GCNGC	3 cut(s)	7, 159, 405
Bme1390I	CCNGG	3 cut(s)	247, 424, 663
BmgT120I	GGNCC	2 cut(s)	510, 659
BmrFI	CCNGG	3 cut(s)	247, 424, 663
BmrI	ACTGGG	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpuEI	CTTGAG	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	417, 513, 661
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 418, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 423, 629
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	247, 424, 663
BseDI	CCNNGG	3 cut(s)	417, 513, 661
BseLI	CCNNNNNNNGG	3 cut(s)	277, 423, 629
BseMII	CTCAG	3 cut(s)	144, 186, 592
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	3 cut(s)	72, 75, 78
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	5 cut(s)	270, 422, 511, 538, 660
BsiHKAI	GWGCWC	2 cut(s)	448, 579
BslI	CCNNNNNNNGG	3 cut(s)	277, 423, 629
BsmAI	GTCTC	5 cut(s)	175, 310, 340, 421, 724
BsnI	GGCC	5 cut(s)	270, 422, 511, 538, 660
Bsp1286I	GDGCHC	2 cut(s)	448, 579
Bsp143I	GATC	2 cut(s)	439, 581
BspACI	CCGC	5 cut(s)	92, 250, 325, 403, 406
BspANI	GGCC	5 cut(s)	270, 422, 511, 538, 660
BspCNI	CTCAG	3 cut(s)	145, 185, 591
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	417, 513, 661
BssMI	GATC	2 cut(s)	439, 581
BssNAI	GTATAC	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	513
Bst1107I	GTATAC	1 cut(s)	699
Bst2UI	CCWGG	3 cut(s)	247, 424, 663
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	3 cut(s)	372, 500, 601
BstC8I	GCNNGC	2 cut(s)	268, 463
BstDEI	CTNAG	3 cut(s)	153, 172, 578
BstKTI	GATC	2 cut(s)	442, 584
BstMAI	GTCTC	5 cut(s)	175, 310, 340, 421, 724
BstMBI	GATC	2 cut(s)	439, 581
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 193, 256, 272
BstNI	CCWGG	3 cut(s)	247, 424, 663
BstSCI	CCNGG	3 cut(s)	245, 422, 661
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	699
BsuRI	GGCC	5 cut(s)	270, 422, 511, 538, 660
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	268, 463
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	510, 659
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	138
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	153, 172, 578
DpnI	GATC	2 cut(s)	441, 583
DpnII	GATC	2 cut(s)	439, 581
Eam1104I	CTCTTC	3 cut(s)	372, 500, 601
EarI	CTCTTC	3 cut(s)	372, 500, 601
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	510, 659
EcoRII	CCWGG	3 cut(s)	245, 422, 661
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	513
FaiI	YATR	4 cut(s)	556, 573, 699, 736
FalI	AAGNNNNNCTT	4 cut(s)	127, 159, 497, 529
FauI	CCCGC	2 cut(s)	332, 399
FblI	GTMKAC	1 cut(s)	698
Fnu4HI	GCNGC	3 cut(s)	6, 158, 404
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	3 cut(s)	6, 158, 404
FspBI	CTAG	2 cut(s)	534, 692
GluI	GCNGC	3 cut(s)	6, 158, 404
GsaI	CCCAGC	1 cut(s)	597
HaeIII	GGCC	5 cut(s)	270, 422, 511, 538, 660
HgaI	GACGC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	215, 717
HphI	GGTGA	3 cut(s)	15, 449, 535
Hpy166II	GTNNAC	1 cut(s)	699
Hpy188I	TCNGA	5 cut(s)	154, 310, 340, 418, 581
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	1 cut(s)	699
HpyAV	CCTTC	5 cut(s)	19, 114, 554, 583, 690
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	650, 670, 686, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 193, 256, 272
HpyF3I	CTNAG	3 cut(s)	153, 172, 578
Kzo9I	GATC	2 cut(s)	439, 581
LmnI	GCTCC	2 cut(s)	184, 263
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	534, 692
MalI	GATC	2 cut(s)	441, 583
MboI	GATC	2 cut(s)	439, 581
MboII	GAAGA	5 cut(s)	12, 386, 389, 517, 618
MfeI	CAATTG	2 cut(s)	489, 723
MhlI	GDGCHC	2 cut(s)	448, 579
MluCI	AATT	2 cut(s)	489, 723
MlyI	GAGTC	2 cut(s)	209, 726
MmeI	TCCRAC	1 cut(s)	146
MseI	TTAA	3 cut(s)	44, 242, 318
MspR9I	CCNGG	3 cut(s)	247, 424, 663
MunI	CAATTG	2 cut(s)	489, 723
MvaI	CCWGG	3 cut(s)	247, 424, 663
MwoI	GCNNNNNNNGC	4 cut(s)	163, 193, 256, 272
NdeII	GATC	2 cut(s)	439, 581
PceI	AGGCCT	1 cut(s)	538
PkrI	GCNGC	3 cut(s)	7, 159, 405
PleI	GAGTC	2 cut(s)	209, 725
PpsI	GAGTC	2 cut(s)	209, 725
Psp124BI	GAGCTC	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	245, 422, 661
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	3 cut(s)	245, 422, 661
PspPI	GGNCC	2 cut(s)	510, 659
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	44, 242, 318
SatI	GCNGC	3 cut(s)	6, 158, 404
Sau3AI	GATC	2 cut(s)	439, 581
Sau96I	GGNCC	2 cut(s)	510, 659
SchI	GAGTC	2 cut(s)	209, 726
ScrFI	CCNGG	3 cut(s)	247, 424, 663
SduI	GDGCHC	2 cut(s)	448, 579
SfcI	CTRYAG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	2 cut(s)	489, 723
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	5 cut(s)	92, 250, 325, 403, 406
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	534, 692
SstI	GAGCTC	1 cut(s)	448
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	245, 422, 661
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	236, 442
TasI	AATT	2 cut(s)	489, 723
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	44, 242, 318
Tru9I	TTAA	3 cut(s)	44, 242, 318
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	2 cut(s)	5, 157
TspDTI	ATGAA	2 cut(s)	135, 602
TspRI	CASTG	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	698
XspI	CTAG	2 cut(s)	534, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.