Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

36017943 .. 36019355

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1230600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCTCCTTCTCTGGTTCTTCACCATTTATCTCCCACTCTCTAACAAGACCAAACCACTTCTCTGCTTCTTCATCACAAACGCCGCCACCTCCGCCCCAAAATCTGCCTTCACAACCGCCTCATTCTCCGACACCAATTCAGCAGCTCAGCACAAGTTCATCCGAGCAGCCGCCGACGCCGGTAAAAGCGGAGCAGCAAAAGCCTTCCAAGACCAAAACCAAGGCAGACTCCACAGACTGGATAGCTTCCACCTTGACAAGGAGGTTTGGGATTGGTGCTGGCCTTGCTTGGGCTGCCTTTCTCACGGTTGGTGTTGTCTCTGAGCAAATTAAGACCCGCCTCGAGGTCTCCCAACAAGAATCAAACACAAGGTTAAATGTTGAGAAAGAAGAAGAGGTGGTGTTACCTAATGGGATAAGATACTGCGAGTTAAGAGTCGGCGGCGGGGCTACACCGAGGCCGGGGGACTTGGTGGTGATCGACCTCAAGGGCAAAGTAGAAGGCAGCGGACTGGTGTTTGTGGACACATATGAGAGGGAGAAGAAGCCGTTGGCTCTGGTGGTGGGGTCAAAGCAGCCTTACAGCAAGGGAGTGTGTGAAGGGATAGAATATGTGATGAGATCCATGAAGGCAGGAGGCAAAAGGAGAGTGGTGGTTCCTCCAAGCTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAATTCCTCCTTTTGCAACCCTAGACTATATTATTGAGGTTGACAGAGTCTCAATTGCACCCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

260

Amino Acids

27.73

Weight (kDa)

8.81

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	151 - 251	4.8e-18	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	240
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	179
AfiI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 464, 671
AjnI	CCWGG	1 cut(s)	703
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	3 cut(s)	148, 248, 669
AluI	AGCT	3 cut(s)	148, 248, 669
Alw26I	GTCTC	3 cut(s)	325, 355, 766
AlwI	GGATC	1 cut(s)	618
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	4 cut(s)	3, 283, 461, 700
ApeKI	GCWGC	6 cut(s)	145, 169, 196, 296, 507, 577
ApoI	RAATTY	1 cut(s)	714
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	15, 490
AvaI	CYCGRG	1 cut(s)	344
BbvI	GCAGC	6 cut(s)	157, 181, 208, 283, 519, 589
BceAI	ACGGC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	3 cut(s)	325, 355, 766
BfaI	CTAG	1 cut(s)	734
BisI	GCNGC	9 cut(s)	86, 146, 170, 173, 197, 297, 445, 508, 578
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	9 cut(s)	87, 147, 171, 174, 198, 298, 446, 509, 579
Bme1390I	CCNGG	2 cut(s)	465, 705
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	2 cut(s)	465, 705
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	4 cut(s)	222, 458, 464, 703
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 464, 671
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	245, 519
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	4 cut(s)	222, 458, 464, 703
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 464, 671
BseMII	CTCAG	2 cut(s)	163, 315
BseNI	ACTGG	2 cut(s)	245, 519
BseXI	GCAGC	6 cut(s)	157, 181, 208, 283, 519, 589
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	4 cut(s)	5, 285, 463, 702
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	182, 464
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	6 cut(s)	240, 261, 292, 346, 464, 671
BsmAI	GTCTC	3 cut(s)	325, 355, 766
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	4 cut(s)	5, 285, 463, 702
Bso31I	GGTCTC	1 cut(s)	355
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	480, 623
Bsp1720I	GCTNAGC	1 cut(s)	149
BspANI	GGCC	4 cut(s)	5, 285, 463, 702
BspCNI	CTCAG	2 cut(s)	162, 316
BspLI	GGNNCC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	245, 519
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	222, 458, 464, 703
BssMI	GATC	2 cut(s)	480, 623
BssNI	GRCGYC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	149, 324
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	483, 626
BstMAI	GTCTC	3 cut(s)	325, 355, 766
BstMBI	GATC	2 cut(s)	480, 623
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 178, 202, 287, 296
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	463, 703
BstV1I	GCAGC	6 cut(s)	157, 181, 208, 283, 519, 589
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	5, 285, 463, 702
BtsCI	GGATG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	701
CseI	GACGC	1 cut(s)	187
CviAII	CATG	2 cut(s)	628, 777
DdeI	CTNAG	2 cut(s)	149, 324
DpnI	GATC	2 cut(s)	482, 625
DpnII	GATC	2 cut(s)	480, 623
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	631, 780
FaiI	YATR	6 cut(s)	532, 534, 615, 629, 741, 778
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	2 cut(s)	627, 776
FauI	CCCGC	2 cut(s)	347, 440
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	9 cut(s)	86, 146, 170, 173, 197, 297, 445, 508, 578
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	9 cut(s)	86, 146, 170, 173, 197, 297, 445, 508, 578
FspBI	CTAG	1 cut(s)	734
GluI	GCNGC	9 cut(s)	86, 146, 170, 173, 197, 297, 445, 508, 578
HaeIII	GGCC	4 cut(s)	5, 285, 463, 702
HapII	CCGG	2 cut(s)	182, 464
HgaI	GACGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	631, 780
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	4 cut(s)	230, 362, 438, 759
HpaII	CCGG	2 cut(s)	182, 464
HphI	GGTGA	2 cut(s)	15, 490
Hpy166II	GTNNAC	2 cut(s)	526, 754
Hpy188I	TCNGA	3 cut(s)	132, 166, 325
Hpy8I	GTNNAC	2 cut(s)	526, 754
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	6 cut(s)	19, 120, 216, 497, 596, 625
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	4 cut(s)	692, 712, 728, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 178, 202, 287, 296
HpyF3I	CTNAG	2 cut(s)	149, 324
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	631, 780
Kzo9I	GATC	2 cut(s)	480, 623
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	9 cut(s)	195, 226, 267, 477, 500, 545, 621, 690, 717
Lsp1109I	GCAGC	6 cut(s)	157, 181, 208, 283, 519, 589
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	2 cut(s)	482, 625
MboI	GATC	2 cut(s)	480, 623
MboII	GAAGA	5 cut(s)	12, 63, 404, 407, 556
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	623
MluCI	AATT	4 cut(s)	138, 330, 714, 765
MlyI	GAGTC	3 cut(s)	224, 447, 768
MmeI	TCCRAC	1 cut(s)	155
MseI	TTAA	3 cut(s)	333, 377, 434
MslI	CAYNNNNRTG	1 cut(s)	775
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	2 cut(s)	182, 464
MspR9I	CCNGG	2 cut(s)	465, 705
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	5 cut(s)	94, 178, 202, 287, 296
NciI	CCSGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	480, 623
NlaIII	CATG	2 cut(s)	631, 780
NlaIV	GGNNCC	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	362
PflFI	GACNNNGTC	1 cut(s)	758
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	9 cut(s)	87, 147, 171, 174, 198, 298, 446, 509, 579
PleI	GAGTC	3 cut(s)	224, 446, 767
PpsI	GAGTC	3 cut(s)	224, 446, 767
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	1 cut(s)	701
PspXI	VCTCGAGB	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	623
PsyI	GACNNNGTC	1 cut(s)	758
RseI	CAYNNNNRTG	1 cut(s)	775
SaqAI	TTAA	3 cut(s)	333, 377, 434
SatI	GCNGC	9 cut(s)	86, 146, 170, 173, 197, 297, 445, 508, 578
Sau3AI	GATC	2 cut(s)	480, 623
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	3 cut(s)	224, 447, 768
ScrFI	CCNGG	2 cut(s)	465, 705
Sfr274I	CTCGAG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	775
SmlI	CTYRAG	2 cut(s)	344, 488
SmoI	CTYRAG	2 cut(s)	344, 488
Sse9I	AATT	4 cut(s)	138, 330, 714, 765
SspMI	CTAG	1 cut(s)	734
StyD4I	CCNGG	2 cut(s)	463, 703
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	345, 483
TasI	AATT	4 cut(s)	138, 330, 714, 765
TauI	GCSGC	3 cut(s)	88, 175, 447
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	3 cut(s)	333, 377, 434
Tru9I	TTAA	3 cut(s)	333, 377, 434
TseI	GCWGC	6 cut(s)	145, 169, 196, 296, 507, 577
TspDTI	ATGAA	3 cut(s)	63, 150, 644
Tth111I	GACNNNGTC	1 cut(s)	758
Van91I	CCANNNNNTGG	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.