Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

1402785 .. 1403857

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG017100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAATATTGTATCTTCATCAAGATTTTATCACCATCATCATATCCTATAATGGCTGCCTTCTCTGGTTCTTCACCATTTCTCTCCCACACCTTAACAAGACCAAACCATTTTGCGTCATCGCAAACACCTCCTCCTCCTCCTCCGCCAAATATTCCTTCACAACCAAACCCTCCAACACCACTTCAAAGTACAACTTCATCATCTGAGCAGCAAAAGCCTGTCTCAGTAAAAGTGGAGCAACAAAAGCCCTCCAAGACAAAGGCTGACTCTACAGATTGGATAGCTTCGAGCTTAACCAGGCGGTTCGGGCTTGGAGCAGGCCTCGCCTGGGCTACCTTTCTTGCAGTTGGTGTAGTCTCCGAACAGGTTAAGACCCGCCTTGAAGTCTCTGAACAAGAAGCTAACACAAGAAATGTTGAGAAAGAAGAAGAGGTAGTGTTACCTAATGGCATAAGATACTACGAGTTGAGAGTTGGTGGCGGGGCAACTCCGAGGCCAGGAGACTTGGTGGTGATCGAGCTCAAGGGGGAGGTAGCAGGCACTGGGCAAGTGTTTGTGAATACAATTGAGAATGACAAGAAGAGGCCTTTGGCTCTAGTGATGGGGTCTAGGCCTTACAGCAAAGGACTATGTGAAGGGATAGAATATGTGCTCAGATCAATGAAGGCTGGGGGTAAAAGAAGAGTAATAGTTCCTCCAAACTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAGTTCCTCCTTCTGCAACTCTAGAGTATACTATTGAGATTGAAAGAGTCTCAATTGCACCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

271

Amino Acids

29.16

Weight (kDa)

9.0

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	163 - 263	7.8e-18	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	776
AciI	CCGC	4 cut(s)	146, 304, 379, 483
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	3 cut(s)	331, 500, 707
AgsI	TTSAA	3 cut(s)	188, 386, 791
AjnI	CCWGG	4 cut(s)	299, 329, 499, 739
AjuI	GAANNNNNNNTTGG	4 cut(s)	142, 174, 575, 607
AluBI	AGCT	4 cut(s)	287, 294, 404, 523
AluI	AGCT	4 cut(s)	287, 294, 404, 523
Alw21I	GWGCWC	2 cut(s)	525, 657
Alw26I	GTCTC	5 cut(s)	229, 364, 394, 498, 802
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	5 cut(s)	322, 497, 587, 614, 736
ApeKI	GCWGC	2 cut(s)	56, 211
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	24, 66, 526
BanII	GRGCYC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	525, 657
BbvI	GCAGC	2 cut(s)	43, 223
BccI	CCATC	2 cut(s)	43, 598
BciT130I	CCWGG	4 cut(s)	301, 331, 501, 741
BcoDI	GTCTC	5 cut(s)	229, 364, 394, 498, 802
BfaI	CTAG	3 cut(s)	599, 612, 770
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	2 cut(s)	57, 212
BlsI	GCNGC	2 cut(s)	58, 213
Bme1390I	CCNGG	4 cut(s)	301, 331, 501, 741
BmgT120I	GGNCC	1 cut(s)	737
BmrFI	CCNGG	4 cut(s)	301, 331, 501, 741
BmrI	ACTGGG	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	555
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpuEI	CTTGAG	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	330, 494, 739
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 500, 707
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	4 cut(s)	301, 331, 501, 741
BseDI	CCNNGG	3 cut(s)	330, 494, 739
BseLI	CCNNNNNNNGG	3 cut(s)	331, 500, 707
BseMII	CTCAG	3 cut(s)	198, 240, 670
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	4 cut(s)	123, 126, 129, 132
BseXI	GCAGC	2 cut(s)	43, 223
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	5 cut(s)	324, 499, 589, 616, 738
BsiHKAI	GWGCWC	2 cut(s)	525, 657
BslI	CCNNNNNNNGG	3 cut(s)	331, 500, 707
BsmAI	GTCTC	5 cut(s)	229, 364, 394, 498, 802
BsnI	GGCC	5 cut(s)	324, 499, 589, 616, 738
Bsp1286I	GDGCHC	2 cut(s)	525, 657
Bsp143I	GATC	2 cut(s)	516, 659
BspACI	CCGC	4 cut(s)	146, 304, 379, 483
BspANI	GGCC	5 cut(s)	324, 499, 589, 616, 738
BspCNI	CTCAG	3 cut(s)	199, 239, 669
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	330, 494, 739
BssMI	GATC	2 cut(s)	516, 659
BssNAI	GTATAC	1 cut(s)	777
Bst1107I	GTATAC	1 cut(s)	777
Bst2UI	CCWGG	4 cut(s)	301, 331, 501, 741
Bst6I	CTCTTC	3 cut(s)	426, 578, 679
BstC8I	GCNNGC	2 cut(s)	322, 541
BstDEI	CTNAG	3 cut(s)	207, 226, 656
BstKTI	GATC	2 cut(s)	519, 662
BstMAI	GTCTC	5 cut(s)	229, 364, 394, 498, 802
BstMBI	GATC	2 cut(s)	516, 659
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 247, 310, 326
BstNI	CCWGG	4 cut(s)	301, 331, 501, 741
BstSCI	CCNGG	4 cut(s)	299, 329, 499, 739
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	43, 223
BstZ17I	GTATAC	1 cut(s)	777
BsuRI	GGCC	5 cut(s)	324, 499, 589, 616, 738
BtgZI	GCGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	2 cut(s)	322, 541
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	737
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	192
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	207, 226, 656
DpnI	GATC	2 cut(s)	518, 661
DpnII	GATC	2 cut(s)	516, 659
Eam1104I	CTCTTC	3 cut(s)	426, 578, 679
EarI	CTCTTC	3 cut(s)	426, 578, 679
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	523
Eco147I	AGGCCT	3 cut(s)	324, 589, 616
Eco24I	GRGCYC	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	4 cut(s)	299, 329, 499, 739
EcoT38I	GRGCYC	1 cut(s)	525
FaiI	YATR	7 cut(s)	43, 50, 455, 634, 651, 777, 814
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FauI	CCCGC	2 cut(s)	386, 476
FblI	GTMKAC	1 cut(s)	776
Fnu4HI	GCNGC	2 cut(s)	57, 212
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	2 cut(s)	57, 212
FspBI	CTAG	3 cut(s)	599, 612, 770
GluI	GCNGC	2 cut(s)	57, 212
GsaI	CCCAGC	1 cut(s)	675
HaeIII	GGCC	5 cut(s)	324, 499, 589, 616, 738
HgaI	GACGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	269, 795
HphI	GGTGA	3 cut(s)	24, 66, 526
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	5 cut(s)	208, 364, 394, 495, 659
Hpy188III	TCNNGA	2 cut(s)	22, 770
Hpy8I	GTNNAC	1 cut(s)	777
HpyAV	CCTTC	5 cut(s)	70, 168, 632, 661, 768
HpyCH4V	TGCA	5 cut(s)	347, 728, 748, 764, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 247, 310, 326
HpyF3I	CTNAG	3 cut(s)	207, 226, 656
Kzo9I	GATC	2 cut(s)	516, 659
LmnI	GCTCC	2 cut(s)	238, 317
Lsp1109I	GCAGC	2 cut(s)	43, 223
MaeI	CTAG	3 cut(s)	599, 612, 770
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	2 cut(s)	518, 661
MboI	GATC	2 cut(s)	516, 659
MboII	GAAGA	6 cut(s)	7, 63, 440, 443, 595, 696
MfeI	CAATTG	2 cut(s)	567, 801
MhlI	GDGCHC	2 cut(s)	525, 657
MluCI	AATT	2 cut(s)	567, 801
MlyI	GAGTC	2 cut(s)	263, 804
MmeI	TCCRAC	1 cut(s)	200
MseI	TTAA	3 cut(s)	95, 296, 372
MspR9I	CCNGG	4 cut(s)	301, 331, 501, 741
MunI	CAATTG	2 cut(s)	567, 801
MvaI	CCWGG	4 cut(s)	301, 331, 501, 741
MwoI	GCNNNNNNNGC	4 cut(s)	217, 247, 310, 326
NdeII	GATC	2 cut(s)	516, 659
PceI	AGGCCT	3 cut(s)	324, 589, 616
PkrI	GCNGC	2 cut(s)	58, 213
PleI	GAGTC	2 cut(s)	263, 803
PpsI	GAGTC	2 cut(s)	263, 803
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	4 cut(s)	299, 329, 499, 739
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	4 cut(s)	299, 329, 499, 739
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	95, 296, 372
SatI	GCNGC	2 cut(s)	57, 212
Sau3AI	GATC	2 cut(s)	516, 659
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	263, 804
ScrFI	CCNGG	4 cut(s)	301, 331, 501, 741
SduI	GDGCHC	2 cut(s)	525, 657
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	2 cut(s)	567, 801
SseBI	AGGCCT	3 cut(s)	324, 589, 616
SsiI	CCGC	4 cut(s)	146, 304, 379, 483
SspI	AATATT	2 cut(s)	8, 154
SspMI	CTAG	3 cut(s)	599, 612, 770
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	3 cut(s)	324, 589, 616
StyD4I	CCNGG	4 cut(s)	299, 329, 499, 739
TaqI	TCGA	2 cut(s)	290, 519
TasI	AATT	2 cut(s)	567, 801
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	95, 296, 372
Tru9I	TTAA	3 cut(s)	95, 296, 372
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	2 cut(s)	56, 211
TspDTI	ATGAA	4 cut(s)	7, 17, 189, 680
TspRI	CASTG	1 cut(s)	550
XbaI	TCTAGA	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	776
XspI	CTAG	3 cut(s)	599, 612, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.