pycom17g14050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011742
Physical Location & Seq
Reverse (-)
11636331 .. 11637565
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g14050.3

Sequence Viewer

Length: 441 bp
ATGATTTACTTGGAATCTGACGGTGTTAAACTGCGGCAAATAAAATTTTCCTGTTGTATTGAATTTTCGAAGGGCTTCCTTTCCAATTTTGATAACTCAGCAGCTGCAAGCAAAGCAGAGAGTTTTTTTATTCAAGAGCAACAATCCAGAACAATTTCCATGGGAAGAGTCACGGATTCCTATTTCTTAGCTCTCACTGCCATTGTCACTGGGACGAATTCTAGGATGGAGGTGAAAGCATTTGATCAGATGTGCCTATTCATTTGCAAGTCAGAAGAGATACACAAAGATAAAGACAGGTTGAGCGATAAAAGCTCAGCCACAAGTGATCAAGTAGTGTATTTTGTGTTTCCCTTCCTCCACTGGGAAGTTTGTGAAATCGCAGTGGTTGGAACGCCACATTGGTTTGGGTATGCTCTCTGTCTCAGTGTTGTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

5.57

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011742)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18170 AT1G73655
malus_domestica MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica Prupe.5G231900_v2.0.a1
pyrus_communis pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis RchiOBHm_Chr7g0178601
rosa_laevigata RLG00000005433
rosa_multiflora Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii Rroxscaffold_3G00274770
rosa_rugosa Rorug06G0418300
rosa_samantha Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana Rw7G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AcsI RAATTY 3 cut(s) 44, 62, 217
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 2 cut(s) 62, 134
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
AluBI AGCT 3 cut(s) 104, 191, 315
AluI AGCT 3 cut(s) 104, 191, 315
Alw26I GTCTC 1 cut(s) 428
AlwNI CAGNNNCTG 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 101, 104
ApoI RAATTY 3 cut(s) 44, 62, 217
Asp700I GAANNNNTTC 2 cut(s) 74, 154
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 91, 113
BccI CCATC 1 cut(s) 220
BclI TGATCA 2 cut(s) 244, 328
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 222
BisI GCNGC 3 cut(s) 35, 102, 105
BlpI GCTNAGC 1 cut(s) 316
BlsI GCNGC 3 cut(s) 36, 103, 106
BmrI ACTGGG 2 cut(s) 219, 373
BmuI ACTGGG 2 cut(s) 219, 373
Bpu1102I GCTNAGC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 214, 368
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 3 cut(s) 111, 330, 439
BseNI ACTGG 2 cut(s) 214, 368
BseXI GCAGC 2 cut(s) 91, 113
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 68
Bsp143I GATC 2 cut(s) 244, 328
Bsp1720I GCTNAGC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 3 cut(s) 110, 329, 438
BspT104I TTCGAA 1 cut(s) 68
BsrI ACTGG 2 cut(s) 214, 368
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 244, 328
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 160, 270
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 4 cut(s) 97, 187, 316, 425
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 2 cut(s) 247, 331
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 244, 328
BstMWI GCNNNNNNNGC 3 cut(s) 113, 197, 312
BstV1I GCAGC 2 cut(s) 91, 113
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 2 cut(s) 195, 390
BtsIMutI CAGTG 5 cut(s) 195, 207, 361, 390, 433
Cac8I GCNNGC 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 104
CviAII CATG 1 cut(s) 160
CviJI RGCY 5 cut(s) 75, 104, 191, 315, 320
CviKI_1 RGCY 5 cut(s) 75, 104, 191, 315, 320
DdeI CTNAG 4 cut(s) 97, 187, 316, 425
DpnI GATC 2 cut(s) 246, 330
DpnII GATC 2 cut(s) 244, 328
Eam1104I CTCTTC 2 cut(s) 160, 270
EarI CTCTTC 2 cut(s) 160, 270
Eco130I CCWWGG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 161, 414
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 159
FbaI TGATCA 2 cut(s) 244, 328
Fnu4HI GCNGC 3 cut(s) 35, 102, 105
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 35, 102, 105
FspBI CTAG 1 cut(s) 222
GluI GCNGC 3 cut(s) 35, 102, 105
Hin1II CATG 1 cut(s) 163
HinfI GANTC 3 cut(s) 14, 168, 176
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 19, 249, 274
Hpy188III TCNNGA 2 cut(s) 134, 147
HpyAV CCTTC 2 cut(s) 64, 364
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 107, 267
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 197, 312
HpyF3I CTNAG 4 cut(s) 97, 187, 316, 425
Hsp92II CATG 1 cut(s) 163
Ksp22I TGATCA 2 cut(s) 244, 328
Kzo9I GATC 2 cut(s) 244, 328
LpnPI CCDG 5 cut(s) 64, 160, 195, 283, 349
Lsp1109I GCAGC 2 cut(s) 91, 113
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 169, 205
MalI GATC 2 cut(s) 246, 330
MboI GATC 2 cut(s) 244, 328
MboII GAAGA 2 cut(s) 177, 287
MluCI AATT 5 cut(s) 44, 62, 85, 153, 217
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 2 cut(s) 223, 368
MroXI GAANNNNTTC 2 cut(s) 74, 154
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 113, 197, 312
NcoI CCATGG 1 cut(s) 159
NdeII GATC 2 cut(s) 244, 328
NlaIII CATG 1 cut(s) 163
NmuCI GTSAC 2 cut(s) 169, 205
NspV TTCGAA 1 cut(s) 68
PdmI GAANNNNTTC 2 cut(s) 74, 154
PfeI GAWTC 2 cut(s) 14, 176
PkrI GCNGC 3 cut(s) 36, 103, 106
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PstNI CAGNNNCTG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 3 cut(s) 35, 102, 105
Sau3AI GATC 2 cut(s) 244, 328
SchI GAGTC 1 cut(s) 177
SetI ASST 5 cut(s) 106, 193, 234, 302, 317
SfuI TTCGAA 1 cut(s) 68
Sse9I AATT 5 cut(s) 44, 62, 85, 153, 217
SsiI CCGC 1 cut(s) 34
SspMI CTAG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 68
TasI AATT 5 cut(s) 44, 62, 85, 153, 217
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 2 cut(s) 14, 176
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 5 cut(s) 202, 214, 368, 390, 433
TseFI GTSAC 2 cut(s) 169, 205
TseI GCWGC 2 cut(s) 101, 104
Tsp45I GTSAC 2 cut(s) 169, 205
TspDTI ATGAA 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 5 cut(s) 202, 214, 368, 390, 433
XapI RAATTY 3 cut(s) 44, 62, 217
XmnI GAANNNNTTC 2 cut(s) 74, 154
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.