Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

1132321 .. 1133341

Gene Structure 1021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGCCTTCTCCGGTTCTTCACCATTTCTCTCCCACACCTTAACAAGACCAAACCATTTTGCGTCATCACAAACACCTCCTCCTCCTCCTCCGCCAAATATTCCTTCACAACCAAACCCTCCAACACCACTTCAAAGTACAACTTCATCATCTGAGCAGCAAAAGCCTGTCTCAGTAAAAGTGGAGCAACAAAAATTGGATAGCTTCGGCTTAACCAGGCGGTTCGGGCTTGGAGCTGGCCTCGCCTGGGCTACCTTTCTTGCAGTTGGTGTAGTCTCCGAACAGGTTAAGACCCGCCTTGAAGTCTCTGAACAAGAAGCTAACACAAGAAATGTTGAGAAAGAAGAAGAGGTAGTGTTACCTAATGGCATAAGATACTACGAGTTGAGAGTTGGTGGCGGGGCAACTCCGAGGCCAGGAGACTTGGTGGTGATCGAGCTCAAGGGGGAGGTAGCAGGCACTGGGCAAGCGTTTGTGAATACAATTGAGAATGACAAGAAGAGGCCTTTGGCTCTAGTGATGGGGTCTAGGCCTTACAGCAAAGGACTATGTGAAGGGATAGAATATGTGCTCAGATCAATGAAGGCTGGGGGTAAAAGAAGAGTAATAGTTCCTCCAAACTTGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAGTTCCTCCTTCTGCAACCCTAGAGTATACTATTGAGATTGAAAGAGTCTCAATTGCACCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

244

Amino Acids

26.09

Weight (kDa)

7.82

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	136 - 236	1.8e-17	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	695
AciI	CCGC	4 cut(s)	95, 223, 298, 402
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	250, 419, 626
AgsI	TTSAA	3 cut(s)	137, 305, 710
AjnI	CCWGG	4 cut(s)	218, 248, 418, 658
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 494, 526
AluBI	AGCT	4 cut(s)	207, 239, 323, 442
AluI	AGCT	4 cut(s)	207, 239, 323, 442
Alw21I	GWGCWC	2 cut(s)	444, 576
Alw26I	GTCTC	5 cut(s)	178, 283, 313, 417, 721
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	5 cut(s)	241, 416, 506, 533, 655
ApeKI	GCWGC	2 cut(s)	5, 160
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	15, 445
BanII	GRGCYC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	444, 576
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	4 cut(s)	220, 250, 420, 660
BcoDI	GTCTC	5 cut(s)	178, 283, 313, 417, 721
BfaI	CTAG	3 cut(s)	518, 531, 689
BisI	GCNGC	2 cut(s)	6, 161
BlsI	GCNGC	2 cut(s)	7, 162
Bme1390I	CCNGG	4 cut(s)	220, 250, 420, 660
BmgT120I	GGNCC	1 cut(s)	656
BmrFI	CCNGG	4 cut(s)	220, 250, 420, 660
BmrI	ACTGGG	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	249, 413, 658
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 419, 626
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	4 cut(s)	220, 250, 420, 660
BseDI	CCNNGG	3 cut(s)	249, 413, 658
BseLI	CCNNNNNNNGG	3 cut(s)	250, 419, 626
BseMII	CTCAG	3 cut(s)	147, 189, 589
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 81
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	590
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	5 cut(s)	243, 418, 508, 535, 657
BsiHKAI	GWGCWC	2 cut(s)	444, 576
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	3 cut(s)	250, 419, 626
BsmAI	GTCTC	5 cut(s)	178, 283, 313, 417, 721
BsnI	GGCC	5 cut(s)	243, 418, 508, 535, 657
Bsp1286I	GDGCHC	2 cut(s)	444, 576
Bsp143I	GATC	2 cut(s)	435, 578
BspACI	CCGC	4 cut(s)	95, 223, 298, 402
BspANI	GGCC	5 cut(s)	243, 418, 508, 535, 657
BspCNI	CTCAG	3 cut(s)	148, 188, 588
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	249, 413, 658
BssMI	GATC	2 cut(s)	435, 578
BssNAI	GTATAC	1 cut(s)	696
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	4 cut(s)	220, 250, 420, 660
Bst6I	CTCTTC	3 cut(s)	345, 497, 598
BstC8I	GCNNGC	3 cut(s)	241, 460, 471
BstDEI	CTNAG	3 cut(s)	156, 175, 575
BstKTI	GATC	2 cut(s)	438, 581
BstMAI	GTCTC	5 cut(s)	178, 283, 313, 417, 721
BstMBI	GATC	2 cut(s)	435, 578
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 229, 245
BstNI	CCWGG	4 cut(s)	220, 250, 420, 660
BstSCI	CCNGG	4 cut(s)	218, 248, 418, 658
BstV1I	GCAGC	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	243, 418, 508, 535, 657
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	241, 460, 471
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	141
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	156, 175, 575
DpnI	GATC	2 cut(s)	437, 580
DpnII	GATC	2 cut(s)	435, 578
Eam1104I	CTCTTC	3 cut(s)	345, 497, 598
EarI	CTCTTC	3 cut(s)	345, 497, 598
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	442
Eco147I	AGGCCT	2 cut(s)	508, 535
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	4 cut(s)	218, 248, 418, 658
EcoT38I	GRGCYC	1 cut(s)	444
FaiI	YATR	5 cut(s)	374, 553, 570, 696, 733
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FauI	CCCGC	2 cut(s)	305, 395
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	2 cut(s)	6, 161
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	6, 161
FspBI	CTAG	3 cut(s)	518, 531, 689
GluI	GCNGC	2 cut(s)	6, 161
GsaI	CCCAGC	1 cut(s)	594
HaeIII	GGCC	5 cut(s)	243, 418, 508, 535, 657
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	714
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	15, 445
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	5 cut(s)	157, 283, 313, 414, 578
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	5 cut(s)	19, 117, 551, 580, 687
HpyCH4V	TGCA	5 cut(s)	266, 647, 667, 683, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 229, 245
HpyF3I	CTNAG	3 cut(s)	156, 175, 575
Kzo9I	GATC	2 cut(s)	435, 578
LmnI	GCTCC	2 cut(s)	187, 236
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	3 cut(s)	518, 531, 689
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	437, 580
MboI	GATC	2 cut(s)	435, 578
MboII	GAAGA	5 cut(s)	12, 359, 362, 514, 615
MfeI	CAATTG	2 cut(s)	486, 720
MhlI	GDGCHC	2 cut(s)	444, 576
MluCI	AATT	3 cut(s)	197, 486, 720
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	149
MseI	TTAA	3 cut(s)	44, 215, 291
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	4 cut(s)	220, 250, 420, 660
MunI	CAATTG	2 cut(s)	486, 720
MvaI	CCWGG	4 cut(s)	220, 250, 420, 660
MwoI	GCNNNNNNNGC	3 cut(s)	166, 229, 245
NdeII	GATC	2 cut(s)	435, 578
PceI	AGGCCT	2 cut(s)	508, 535
PkrI	GCNGC	2 cut(s)	7, 162
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	4 cut(s)	218, 248, 418, 658
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	4 cut(s)	218, 248, 418, 658
PspPI	GGNCC	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	44, 215, 291
SatI	GCNGC	2 cut(s)	6, 161
Sau3AI	GATC	2 cut(s)	435, 578
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	4 cut(s)	220, 250, 420, 660
SduI	GDGCHC	2 cut(s)	444, 576
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	197, 486, 720
SseBI	AGGCCT	2 cut(s)	508, 535
SsiI	CCGC	4 cut(s)	95, 223, 298, 402
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	3 cut(s)	518, 531, 689
SstI	GAGCTC	1 cut(s)	444
StuI	AGGCCT	2 cut(s)	508, 535
StyD4I	CCNGG	4 cut(s)	218, 248, 418, 658
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	197, 486, 720
TatI	WGTACW	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	44, 215, 291
Tru9I	TTAA	3 cut(s)	44, 215, 291
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	2 cut(s)	5, 160
TspDTI	ATGAA	2 cut(s)	138, 599
TspRI	CASTG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	695
XspI	CTAG	3 cut(s)	518, 531, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.