Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

1132163 .. 1133184

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTGCCTTCTCTGGTTCTTCACCATTTCTCTCCCACACCTTAATAAGACCAAACCATTTTGCGTCATCACAAACACCTCCTCCTCCTCCTCCGCCAAATATTCCTTCACAACCAAACCCTCCAACACCACTTCAAAGTACAACTTCATCATCTGAGCAGCAAAAGCCTGTCTCAGTAAAAGTGGAGCAACAAAAGCCCTCCAAGACAAAGGCTGACTCTACAGATTGGATAGCTTCGAGCTTAACCAGGCGGTTCGGGCTTGGAGCTGGCCTCGCCTGGGCTACCTTTCTTGCAGTTGGTGTAGTCTCCGAACAGGTTAAGACCCGCCTTGAAGTCTCTGAACAAGAAGCTAACACAAGAAATGTTGAGAAAGAAGAAGAGGTAGTGTTACCCAATGGCATAAGATACTACGAGTTGAGAGTTGGTGGCGGGGCAACTCCGAGGCCAGGAGACTTGGTGGTGATCGAGCTCAAGGGGGAGGTAGCAGGCACTGGGCAAGCGTTTGTGAATACAATTGAGAATGACAAGAAGAGGCCTTTGGCTCTAGTGATGGGGTCTAGGCCTTACAGCAAAGGACTATGTGAAGGGATAGAATATGTGCTCAGATCAATGAAGGCTGGGGGTAAAAGAAGAGTAATAGTACCTCCAAACTCGGGGTTTGGAGAAAATGGTGCAGATTTAGGCCCTGGTCTGCAAGTTCCTCCTTCTGCAACTCTAGAGTATACTATTGAGATTGAAAGAGTCTCAATTGCACCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

254

Amino Acids

27.14

Weight (kDa)

8.62

Isoelectric Point (pI)

63.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	146 - 246	9.2e-17	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	725
AciI	CCGC	4 cut(s)	95, 253, 328, 432
AfaI	GTAC	2 cut(s)	142, 645
AfiI	CCNNNNNNNGG	3 cut(s)	280, 449, 656
AgsI	TTSAA	3 cut(s)	137, 335, 740
AjnI	CCWGG	4 cut(s)	248, 278, 448, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 524, 556
AluBI	AGCT	5 cut(s)	236, 243, 269, 353, 472
AluI	AGCT	5 cut(s)	236, 243, 269, 353, 472
Alw21I	GWGCWC	2 cut(s)	474, 606
Alw26I	GTCTC	5 cut(s)	178, 313, 343, 447, 751
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	655
AoxI	GGCC	5 cut(s)	271, 446, 536, 563, 685
ApeKI	GCWGC	2 cut(s)	5, 160
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	15, 475
AvaI	CYCGRG	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	474, 606
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	547
BciT130I	CCWGG	4 cut(s)	250, 280, 450, 690
BcoDI	GTCTC	5 cut(s)	178, 313, 343, 447, 751
BfaI	CTAG	3 cut(s)	548, 561, 719
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	6, 161
BlsI	GCNGC	2 cut(s)	7, 162
Bme1390I	CCNGG	4 cut(s)	250, 280, 450, 690
BmeT110I	CYCGRG	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	686
BmrFI	CCNGG	4 cut(s)	250, 280, 450, 690
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpuEI	CTTGAG	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	279, 443, 688
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 444, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 449, 656
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	4 cut(s)	250, 280, 450, 690
BseDI	CCNNGG	3 cut(s)	279, 443, 688
BseLI	CCNNNNNNNGG	3 cut(s)	280, 449, 656
BseMII	CTCAG	3 cut(s)	147, 189, 619
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 81
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BsiHKAI	GWGCWC	2 cut(s)	474, 606
BsiHKCI	CYCGRG	1 cut(s)	655
BslI	CCNNNNNNNGG	3 cut(s)	280, 449, 656
BsmAI	GTCTC	5 cut(s)	178, 313, 343, 447, 751
BsnI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	2 cut(s)	474, 606
Bsp143I	GATC	2 cut(s)	465, 608
BspACI	CCGC	4 cut(s)	95, 253, 328, 432
BspANI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BspCNI	CTCAG	3 cut(s)	148, 188, 618
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	3 cut(s)	279, 443, 688
BssMI	GATC	2 cut(s)	465, 608
BssNAI	GTATAC	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	726
Bst2UI	CCWGG	4 cut(s)	250, 280, 450, 690
Bst6I	CTCTTC	3 cut(s)	375, 527, 628
BstC8I	GCNNGC	3 cut(s)	271, 490, 501
BstDEI	CTNAG	3 cut(s)	156, 175, 605
BstKTI	GATC	2 cut(s)	468, 611
BstMAI	GTCTC	5 cut(s)	178, 313, 343, 447, 751
BstMBI	GATC	2 cut(s)	465, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 196, 259, 275
BstNI	CCWGG	4 cut(s)	250, 280, 450, 690
BstSCI	CCNGG	4 cut(s)	248, 278, 448, 688
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	726
BsuRI	GGCC	5 cut(s)	273, 448, 538, 565, 687
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	271, 490, 501
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	686
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	141, 644
CviQI	GTAC	2 cut(s)	141, 644
DdeI	CTNAG	3 cut(s)	156, 175, 605
DpnI	GATC	2 cut(s)	467, 610
DpnII	GATC	2 cut(s)	465, 608
Eam1104I	CTCTTC	3 cut(s)	375, 527, 628
EarI	CTCTTC	3 cut(s)	375, 527, 628
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	472
Eco147I	AGGCCT	2 cut(s)	538, 565
Eco24I	GRGCYC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	655
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	4 cut(s)	248, 278, 448, 688
EcoT38I	GRGCYC	1 cut(s)	474
FaiI	YATR	5 cut(s)	404, 583, 600, 726, 763
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FauI	CCCGC	2 cut(s)	335, 425
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	2 cut(s)	6, 161
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	6, 161
FspBI	CTAG	3 cut(s)	548, 561, 719
GluI	GCNGC	2 cut(s)	6, 161
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	5 cut(s)	273, 448, 538, 565, 687
HgaI	GACGC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	218, 744
HphI	GGTGA	2 cut(s)	15, 475
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	5 cut(s)	157, 313, 343, 444, 608
Hpy188III	TCNNGA	1 cut(s)	719
Hpy8I	GTNNAC	1 cut(s)	726
HpyAV	CCTTC	5 cut(s)	19, 117, 581, 610, 717
HpyCH4V	TGCA	5 cut(s)	296, 677, 697, 713, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 196, 259, 275
HpyF3I	CTNAG	3 cut(s)	156, 175, 605
Kzo9I	GATC	2 cut(s)	465, 608
LmnI	GCTCC	2 cut(s)	187, 266
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	3 cut(s)	548, 561, 719
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	2 cut(s)	467, 610
MboI	GATC	2 cut(s)	465, 608
MboII	GAAGA	5 cut(s)	12, 389, 392, 544, 645
MfeI	CAATTG	2 cut(s)	516, 750
MhlI	GDGCHC	2 cut(s)	474, 606
MluCI	AATT	2 cut(s)	516, 750
MlyI	GAGTC	2 cut(s)	212, 753
MmeI	TCCRAC	1 cut(s)	149
MseI	TTAA	3 cut(s)	44, 245, 321
MspR9I	CCNGG	4 cut(s)	250, 280, 450, 690
MunI	CAATTG	2 cut(s)	516, 750
MvaI	CCWGG	4 cut(s)	250, 280, 450, 690
MwoI	GCNNNNNNNGC	4 cut(s)	166, 196, 259, 275
NdeII	GATC	2 cut(s)	465, 608
PceI	AGGCCT	2 cut(s)	538, 565
PkrI	GCNGC	2 cut(s)	7, 162
PleI	GAGTC	2 cut(s)	212, 752
PpsI	GAGTC	2 cut(s)	212, 752
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	4 cut(s)	248, 278, 448, 688
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	4 cut(s)	248, 278, 448, 688
PspPI	GGNCC	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	142, 645
RsaNI	GTAC	2 cut(s)	141, 644
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	44, 245, 321
SatI	GCNGC	2 cut(s)	6, 161
Sau3AI	GATC	2 cut(s)	465, 608
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	2 cut(s)	212, 753
ScrFI	CCNGG	4 cut(s)	250, 280, 450, 690
SduI	GDGCHC	2 cut(s)	474, 606
SfcI	CTRYAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	516, 750
SseBI	AGGCCT	2 cut(s)	538, 565
SsiI	CCGC	4 cut(s)	95, 253, 328, 432
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	3 cut(s)	548, 561, 719
SstI	GAGCTC	1 cut(s)	474
StuI	AGGCCT	2 cut(s)	538, 565
StyD4I	CCNGG	4 cut(s)	248, 278, 448, 688
TaqI	TCGA	2 cut(s)	239, 468
TasI	AATT	2 cut(s)	516, 750
TatI	WGTACW	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	44, 245, 321
Tru9I	TTAA	3 cut(s)	44, 245, 321
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	2 cut(s)	5, 160
TspDTI	ATGAA	2 cut(s)	138, 629
TspRI	CASTG	1 cut(s)	499
XbaI	TCTAGA	1 cut(s)	718
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	3 cut(s)	548, 561, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.